HHsearch alignment for GI: 254780601 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.24 E-value=0.44 Score=26.48 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCCCCCHHHHHHHHHHH----CCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 79878989999999997----599-6999928987468999999999861042122556882799984998999999999
Q gi|254780601|r 19 GYVNLTSVQEAILNPDL----REK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~~l----~g~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~ 93 (573)
T Consensus 20 ~~~y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtl-lr~l~~~l~~~-------~~~~~~i~~~~l~----~~~l 87 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL-IRNLLKRLDQE-------RVVAAKLVNTRVD----AEDL 87 (269)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH-HHHHHHHCCCC-------CEEEEEECCCCCC----HHHH
T ss_conf 5414786699999999999964896599972998988999-99999845934-------5489997699999----9999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99985446987999988998799999612897599822310133210001224643189996131100100123578887
Q gi|254780601|r 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 (573)
Q Consensus 94 ~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~ 173 (573)
T Consensus 88 l~~i~~~lg~~~----~~~~~~~~~~~l~--------------~~L~~~~-~~g~~~vliIDEAq~L-~~~~Le~Lr~L~ 147 (269)
T TIGR03015 88 LRMVAADFGLET----EGRDKAALLRELE--------------DFLIEQF-AAGKRALLVVDEAQNL-TPELLEELRMLS 147 (269)
T ss_pred HHHHHHHCCCCC----CCCCHHHHHHHHH--------------HHHHHHH-HCCCCEEEEEECHHHC-CHHHHHHHHHHH
T ss_conf 999999859898----8989999999999--------------9999999-6699469997242219-999999999997
Q ss_pred HHCCCC---CCEEEEE
Q ss_conf 521433---4225631
Q gi|254780601|r 174 DSSPKK---RRMLMFS 186 (573)
Q Consensus 174 ~~~p~~---~q~~l~S 186 (573)
T Consensus 148 n~e~~~~~ll~iiL~G 163 (269)
T TIGR03015 148 NFQTDNAKLLQIFLVG 163 (269)
T ss_pred CCCCCCCCCEEEEEEC
T ss_conf 0135888704899957