HHsearch alignment for GI: 254780601 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.54 E-value=1.3 Score=23.29 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 024554200102--3564167751302334565555542--26663010-4899999999998665
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNALQMM 290 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~~~f 290 (573)
T Consensus 206 GKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~a~ 271 (421)
T TIGR03600 206 GKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 745999999999998669838999257999999999999854897766652899989999999999