HHsearch alignment for GI: 254780601 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=0 Score=429.05 Aligned_cols=201 Identities=40% Similarity=0.612 Sum_probs=192.1
Q ss_pred CC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 77--9988999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r 4 FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 4 f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
T Consensus 1 F~~l~L~~~ll~~l~~~g~~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~----~~~~~alil~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK----KDGPQALILA 76 (203)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC----CCCCEEEEEE
T ss_conf 986965999999999879999999999999999779988997579972228888699999861667----6896699996
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99899999999999985446987999988998799999612897599822310133210001224643189996131100
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml 161 (573)
T Consensus 77 PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHH
T ss_conf 87999999999999850579838999838988799999985387599968189999998488651322489998588887
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 10012357888752143342256311112220011112101233332
Q gi|254780601|r 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVN 208 (573)
Q Consensus 162 ~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~ 208 (573)
T Consensus 157 ~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l~~~~l~~Pv~I~ 203 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred HCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEC
T ss_conf 47769999999985896777999980499889999999779950879