HHsearch alignment for GI: 254780601 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.85 E-value=0.15 Score=29.59 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=62.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-H
Q ss_conf 899999997879878989999999997599699992898746899999999986104212255688279998499899-9
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL-A 87 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL-a 87 (573)
T Consensus 2 ~~~~~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT-~f~~~~a~~~~~~~-------g~~vl~~Sl--Em~~ 71 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKT-TFLREYALDLITQH-------GVRVGTISL--EEPV 71 (271)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHHHHC-------CCEEEEEEC--CCCH
T ss_conf 0441788755665881668887379999808999968998699-99999999999976-------990899970--4999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC-HHHH----HHHHCCCCEEEE-E-----CCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 99999999985446987999988998-7999----996128975998-2-----23101332100012246431899961
Q gi|254780601|r 88 VQVGRELEWLYAKTGVVVAVCIGGVS-VHRE----RRDLQNGAHIVV-G-----TPGRLCDHIRGKGLNISHLKAVVLDE 156 (573)
Q Consensus 88 ~Qv~~~~~~l~~~~~~~v~~~~gg~~-~~~q----~~~l~~~~~iiv-~-----TPgrl~d~~~~~~l~l~~v~~lVlDE 156 (573)
T Consensus 72 ~~~~~Rl--ls~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~-~~~~~~~~vvIDy 148 (271)
T cd01122 72 VRTARRL--LGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDN 148 (271)
T ss_pred HHHHHHH--HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEH
T ss_conf 9999999--999829971103446778099999999997079980887899998899999999999-9828998899831
Q ss_pred CCCCC
Q ss_conf 31100
Q gi|254780601|r 157 ADEML 161 (573)
Q Consensus 157 aD~ml 161 (573)
T Consensus 149 lqll~ 153 (271)
T cd01122 149 LSIMV 153 (271)
T ss_pred HHHCC
T ss_conf 78503