HHsearch alignment for GI: 254780601 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.03 E-value=0.37 Score=26.94 Aligned_cols=49 Identities=29% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999997879878989999999997599--6999928987468999999999861
Q gi|254780601|r 11 IGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 11 l~~~l~~~g~~~pt~iQ~~~ip~~l~g~--d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
T Consensus 55 ~~~~L~~LG~~---~~~~~~l~~~~~~~~GlilitGptGSGKtTtl-~a~l~~~~ 105 (264)
T cd01129 55 QILDLEKLGLK---PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CCCCHHHHCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 65798795799---99999999997089988999789999779999-99998643