Query gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 573
No_of_seqs 266 out of 6441
Neff 7.6
Searched_HMMs 39220
Date Sun May 29 22:47:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780601.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 0 0 1048.7 49.5 541 2-548 6-572 (629)
2 PRK11776 ATP-dependent RNA hel 100.0 0 0 953.7 40.1 442 1-528 3-447 (459)
3 PTZ00110 helicase; Provisional 100.0 0 0 833.5 31.6 360 1-361 181-545 (602)
4 PRK10590 ATP-dependent RNA hel 100.0 0 0 809.9 37.8 372 3-374 2-375 (457)
5 PRK04837 ATP-dependent RNA hel 100.0 0 0 798.8 34.7 372 2-373 9-385 (423)
6 PRK04537 ATP-dependent RNA hel 100.0 0 0 794.9 33.3 372 3-374 10-387 (574)
7 COG0513 SrmB Superfamily II DN 100.0 0 0 788.4 33.6 468 3-505 30-512 (513)
8 PRK11192 ATP-dependent RNA hel 100.0 0 0 779.5 33.6 372 1-374 2-377 (417)
9 PRK01297 ATP-dependent RNA hel 100.0 0 0 777.8 34.0 372 2-373 84-461 (472)
10 KOG0331 consensus 100.0 0 0 757.9 28.4 358 6-363 97-460 (519)
11 KOG0330 consensus 100.0 0 0 715.0 25.9 366 3-374 62-430 (476)
12 KOG0338 consensus 100.0 0 0 688.9 27.6 369 3-374 182-559 (691)
13 KOG0328 consensus 100.0 0 0 679.1 22.0 366 2-373 27-395 (400)
14 KOG0333 consensus 100.0 0 0 673.0 24.7 359 1-359 244-632 (673)
15 KOG0342 consensus 100.0 0 0 646.0 28.0 367 3-374 83-457 (543)
16 KOG0345 consensus 100.0 0 0 637.3 30.1 371 6-377 12-390 (567)
17 KOG0335 consensus 100.0 0 0 640.4 21.7 355 6-360 80-453 (482)
18 KOG0340 consensus 100.0 0 0 628.1 27.0 367 1-373 6-383 (442)
19 KOG0343 consensus 100.0 0 0 629.8 24.6 368 2-373 69-444 (758)
20 KOG0336 consensus 100.0 0 0 629.1 23.8 358 3-361 220-582 (629)
21 KOG0347 consensus 100.0 0 0 621.1 21.6 374 6-380 187-599 (731)
22 KOG0334 consensus 100.0 0 0 613.9 26.6 369 2-373 365-740 (997)
23 KOG0327 consensus 100.0 0 0 611.2 19.3 362 3-372 27-391 (397)
24 KOG0326 consensus 100.0 0 0 612.2 15.8 363 2-371 85-449 (459)
25 KOG0339 consensus 100.0 0 0 600.8 23.9 359 2-361 223-585 (731)
26 KOG0348 consensus 100.0 0 0 597.6 25.5 368 3-371 137-573 (708)
27 KOG0341 consensus 100.0 0 0 602.9 13.8 361 7-368 177-549 (610)
28 KOG0346 consensus 100.0 0 0 585.4 22.3 359 3-361 20-420 (569)
29 KOG0332 consensus 100.0 0 0 555.4 23.0 364 2-378 90-471 (477)
30 KOG4284 consensus 100.0 0 0 550.2 18.3 365 2-373 25-407 (980)
31 KOG0337 consensus 100.0 0 0 545.9 16.2 365 3-372 22-389 (529)
32 KOG0350 consensus 100.0 0 0 517.2 23.2 355 7-366 144-555 (620)
33 KOG0344 consensus 100.0 0 0 496.1 17.8 358 7-365 143-509 (593)
34 KOG0329 consensus 100.0 0 0 449.6 14.3 324 4-368 44-373 (387)
35 KOG0349 consensus 100.0 0 0 443.8 15.5 352 1-352 1-616 (725)
36 cd00268 DEADc DEAD-box helicas 100.0 0 0 429.0 20.2 201 4-208 1-203 (203)
37 PRK13767 ATP-dependent helicas 100.0 0 0 374.6 28.6 373 4-382 15-432 (878)
38 PRK11057 ATP-dependent DNA hel 100.0 0 0 371.3 30.5 333 6-361 8-353 (607)
39 COG1201 Lhr Lhr-like helicases 100.0 0 0 343.1 30.0 361 2-373 3-386 (814)
40 PRK13766 Hef nuclease; Provisi 100.0 8.9E-42 0 300.1 36.3 320 19-350 12-477 (764)
41 TIGR01389 recQ ATP-dependent D 100.0 2.4E-43 0 310.7 25.3 358 17-405 8-378 (607)
42 COG0514 RecQ Superfamily II DN 100.0 2.6E-41 0 297.0 28.8 333 10-364 4-350 (590)
43 PRK00254 ski2-like helicase; P 100.0 1.8E-39 4.6E-44 284.6 29.5 338 1-356 1-392 (717)
44 PRK02362 ski2-like helicase; P 100.0 1.8E-39 4.6E-44 284.6 28.6 328 6-352 7-398 (736)
45 PRK01172 ski2-like helicase; P 100.0 6.5E-39 1.7E-43 280.9 28.3 340 1-359 1-387 (674)
46 COG1205 Distinct helicase fami 100.0 3.2E-38 8.1E-43 276.2 28.6 350 3-362 50-435 (851)
47 TIGR00614 recQ_fam ATP-depende 100.0 6E-38 1.5E-42 274.4 24.1 322 17-362 6-360 (497)
48 PRK09751 putative ATP-dependen 100.0 5.8E-37 1.5E-41 267.8 25.3 335 42-382 1-419 (1490)
49 KOG0351 consensus 100.0 1.7E-34 4.4E-39 251.1 22.6 332 9-363 251-604 (941)
50 pfam00270 DEAD DEAD/DEAH box h 100.0 6.5E-35 1.6E-39 254.0 16.2 166 24-195 1-166 (167)
51 COG1202 Superfamily II helicas 100.0 1.4E-34 3.7E-39 251.6 16.6 333 6-354 200-556 (830)
52 COG1111 MPH1 ERCC4-like helica 100.0 2.6E-31 6.7E-36 229.7 25.2 320 22-352 15-482 (542)
53 COG1204 Superfamily II helicas 100.0 2.1E-31 5.2E-36 230.4 23.9 327 7-348 16-405 (766)
54 KOG0354 consensus 100.0 3.6E-30 9.2E-35 222.1 23.6 328 19-358 59-536 (746)
55 PRK10917 ATP-dependent DNA hel 100.0 6.6E-29 1.7E-33 213.6 29.3 328 9-362 245-600 (677)
56 TIGR00643 recG ATP-dependent D 100.0 1.4E-28 3.7E-33 211.3 27.0 326 9-361 294-666 (721)
57 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-29 4E-34 217.8 22.1 287 27-336 2-357 (357)
58 KOG0352 consensus 100.0 1E-29 2.7E-34 219.0 18.6 330 9-361 5-372 (641)
59 KOG0952 consensus 100.0 5.3E-27 1.4E-31 200.7 24.6 330 15-353 103-493 (1230)
60 COG1200 RecG RecG-like helicas 100.0 1.2E-26 3E-31 198.4 26.0 326 9-360 250-604 (677)
61 COG1061 SSL2 DNA or RNA helica 99.9 3.8E-25 9.7E-30 188.3 23.1 302 20-348 34-388 (442)
62 PRK10689 transcription-repair 99.9 2.4E-24 6.1E-29 182.9 27.1 328 8-363 586-937 (1148)
63 PRK09401 reverse gyrase; Revie 99.9 7.2E-25 1.8E-29 186.4 23.4 283 17-323 74-409 (1176)
64 cd00046 DEXDc DEAD-like helica 99.9 2.9E-26 7.4E-31 195.8 14.3 144 38-189 1-144 (144)
65 smart00487 DEXDc DEAD-like hel 99.9 3.5E-25 8.9E-30 188.5 17.7 188 17-211 3-192 (201)
66 KOG0353 consensus 99.9 2.8E-24 7.2E-29 182.4 20.6 337 9-362 80-478 (695)
67 TIGR00631 uvrb excinuclease AB 99.9 2.3E-24 6E-29 183.0 15.4 131 241-372 444-590 (667)
68 COG1197 Mfd Transcription-repa 99.9 1.3E-21 3.2E-26 164.6 27.4 325 9-361 581-929 (1139)
69 KOG0951 consensus 99.9 2.5E-21 6.3E-26 162.6 28.6 335 18-360 305-711 (1674)
70 TIGR00580 mfd transcription-re 99.9 3.7E-22 9.4E-27 168.2 23.6 344 7-384 493-863 (997)
71 cd00079 HELICc Helicase superf 99.9 1.5E-24 3.9E-29 184.2 9.8 123 225-347 7-131 (131)
72 COG1110 Reverse gyrase [DNA re 99.9 5.1E-22 1.3E-26 167.3 21.9 281 17-322 78-416 (1187)
73 COG1203 CRISPR-associated heli 99.9 1.8E-21 4.5E-26 163.6 22.0 320 23-351 196-550 (733)
74 PRK11664 ATP-dependent RNA hel 99.9 5.2E-21 1.3E-25 160.5 23.7 320 35-381 18-389 (812)
75 TIGR01054 rgy reverse gyrase; 99.9 5.9E-21 1.5E-25 160.1 20.5 289 13-323 75-446 (1843)
76 PRK05298 excinuclease ABC subu 99.9 1E-19 2.5E-24 151.8 26.5 131 241-372 443-589 (657)
77 PRK04914 ATP-dependent helicas 99.9 4.3E-20 1.1E-24 154.3 24.6 347 22-388 151-642 (955)
78 COG4581 Superfamily II RNA hel 99.9 2.2E-20 5.7E-25 156.2 21.5 316 12-349 110-535 (1041)
79 KOG0950 consensus 99.9 2E-20 5E-25 156.6 19.0 340 6-361 206-621 (1008)
80 PRK11131 ATP-dependent RNA hel 99.9 1.9E-18 5E-23 143.2 25.2 327 29-380 80-460 (1295)
81 COG0556 UvrB Helicase subunit 99.9 4.1E-18 1.1E-22 141.0 25.2 130 241-371 443-588 (663)
82 KOG0947 consensus 99.9 3E-19 7.6E-24 148.7 19.1 306 17-351 293-723 (1248)
83 COG1643 HrpA HrpA-like helicas 99.8 8.5E-19 2.2E-23 145.6 21.1 326 31-381 58-438 (845)
84 TIGR01587 cas3_core CRISPR-ass 99.8 2.8E-20 7E-25 155.6 12.7 290 39-341 1-377 (424)
85 COG1198 PriA Primosomal protei 99.8 2E-18 5.1E-23 143.1 21.8 328 8-359 162-611 (730)
86 PRK05580 primosome assembly pr 99.8 1E-17 2.6E-22 138.3 25.1 323 7-359 132-580 (699)
87 COG4098 comFA Superfamily II D 99.8 8.3E-18 2.1E-22 138.9 24.4 308 22-361 97-429 (441)
88 PRK09694 hypothetical protein; 99.8 2.3E-17 5.8E-22 136.0 21.6 307 21-340 287-665 (878)
89 KOG0920 consensus 99.8 6E-15 1.5E-19 119.7 25.1 311 26-354 177-547 (924)
90 KOG0948 consensus 99.8 1.3E-17 3.2E-22 137.7 11.4 304 23-351 130-539 (1041)
91 PRK08074 bifunctional ATP-depe 99.7 8E-15 2E-19 118.9 23.8 81 243-323 755-839 (932)
92 PRK09200 preprotein translocas 99.7 1.9E-14 4.9E-19 116.3 25.8 323 17-353 74-547 (799)
93 PRK11448 hsdR type I restricti 99.7 1.4E-14 3.5E-19 117.3 24.7 315 13-340 404-804 (1126)
94 smart00490 HELICc helicase sup 99.7 9.2E-18 2.4E-22 138.6 8.0 82 258-339 1-82 (82)
95 PRK12906 secA preprotein trans 99.7 4.5E-14 1.2E-18 113.8 25.0 320 17-352 76-583 (823)
96 PRK12904 preprotein translocas 99.7 4.7E-14 1.2E-18 113.7 24.1 320 17-352 77-573 (833)
97 PRK07246 bifunctional ATP-depe 99.7 4.5E-14 1.2E-18 113.8 23.5 289 15-324 239-726 (820)
98 PRK12898 secA preprotein trans 99.7 1.5E-13 3.7E-18 110.4 25.8 320 18-353 115-603 (673)
99 pfam00271 Helicase_C Helicase 99.7 4.6E-17 1.2E-21 134.0 7.7 77 263-339 2-78 (78)
100 pfam06862 DUF1253 Protein of u 99.7 2.1E-15 5.4E-20 122.7 15.8 290 70-360 31-417 (435)
101 CHL00122 secA preprotein trans 99.7 2.7E-13 6.9E-18 108.6 26.5 279 17-310 72-490 (891)
102 KOG0922 consensus 99.7 3E-14 7.6E-19 115.0 20.7 320 36-381 65-440 (674)
103 PRK13103 secA preprotein trans 99.7 1.8E-13 4.6E-18 109.8 24.6 320 17-352 78-592 (913)
104 PRK13104 secA preprotein trans 99.7 2.4E-13 6.1E-18 108.9 25.1 320 17-352 78-588 (896)
105 TIGR01970 DEAH_box_HrpB ATP-de 99.7 4.5E-15 1.1E-19 120.6 15.7 304 29-358 5-353 (858)
106 PRK12326 preprotein translocas 99.7 2.2E-13 5.6E-18 109.2 23.0 322 17-354 85-561 (775)
107 PRK12903 secA preprotein trans 99.6 5.3E-13 1.3E-17 106.6 23.4 320 17-352 74-540 (885)
108 PRK12902 secA preprotein trans 99.6 8.8E-13 2.2E-17 105.1 23.7 280 17-310 81-510 (946)
109 PRK12900 secA preprotein trans 99.6 9.2E-13 2.3E-17 105.0 23.8 127 22-161 94-227 (983)
110 PRK13107 preprotein translocas 99.6 3.8E-12 9.8E-17 100.8 25.6 320 17-352 78-592 (908)
111 TIGR01967 DEAH_box_HrpA ATP-de 99.6 1.4E-14 3.5E-19 117.3 12.9 329 27-380 73-472 (1320)
112 PRK11747 dinG ATP-dependent DN 99.6 1E-11 2.6E-16 98.0 25.9 91 11-110 13-115 (697)
113 PRK12899 secA preprotein trans 99.6 1.3E-11 3.2E-16 97.3 24.0 128 21-161 93-228 (969)
114 KOG2340 consensus 99.6 4.1E-13 1E-17 107.4 16.0 340 20-360 214-677 (698)
115 TIGR03117 cas_csf4 CRISPR-asso 99.6 1.2E-11 3.1E-16 97.5 22.6 87 236-323 463-561 (636)
116 PRK12901 secA preprotein trans 99.5 6.9E-12 1.8E-16 99.1 21.2 127 23-161 172-305 (1111)
117 KOG0924 consensus 99.5 6.9E-13 1.8E-17 105.8 15.7 301 24-351 358-697 (1042)
118 KOG4150 consensus 99.5 2.6E-13 6.7E-18 108.7 12.9 343 9-360 273-651 (1034)
119 TIGR02621 cas3_GSU0051 CRISPR- 99.5 4.7E-13 1.2E-17 107.0 14.0 325 16-350 10-432 (975)
120 pfam03880 DbpA DbpA RNA bindin 99.5 8.6E-14 2.2E-18 111.9 7.7 62 467-528 1-62 (74)
121 KOG0923 consensus 99.5 3.6E-12 9.1E-17 101.0 15.7 292 33-351 276-606 (902)
122 COG4096 HsdR Type I site-speci 99.5 8.3E-12 2.1E-16 98.6 17.6 299 20-338 163-525 (875)
123 COG1199 DinG Rad3-related DNA 99.5 4.4E-10 1.1E-14 87.0 24.8 85 235-323 471-559 (654)
124 TIGR01407 dinG_rel DnaQ family 99.4 1E-10 2.6E-15 91.2 20.8 101 6-114 233-353 (944)
125 KOG0953 consensus 99.4 1.9E-11 4.9E-16 96.1 15.6 292 40-380 194-506 (700)
126 KOG0385 consensus 99.4 3.9E-10 1E-14 87.3 21.7 314 22-351 167-599 (971)
127 KOG0949 consensus 99.4 5.2E-11 1.3E-15 93.3 17.0 156 23-191 512-673 (1330)
128 KOG0951 consensus 99.4 8.6E-11 2.2E-15 91.8 15.9 318 20-375 1141-1510(1674)
129 KOG0926 consensus 99.4 4.3E-11 1.1E-15 93.8 14.3 312 20-351 242-704 (1172)
130 TIGR00595 priA primosomal prot 99.4 2E-10 5E-15 89.3 17.4 290 42-353 2-398 (524)
131 KOG0925 consensus 99.4 4.9E-10 1.3E-14 86.7 19.1 313 1-352 24-388 (699)
132 KOG0384 consensus 99.3 3.3E-09 8.4E-14 81.1 20.3 310 21-351 369-811 (1373)
133 KOG0390 consensus 99.3 8.7E-09 2.2E-13 78.3 21.3 334 22-363 238-722 (776)
134 KOG0387 consensus 99.3 5.5E-09 1.4E-13 79.6 20.0 325 21-361 204-671 (923)
135 KOG0392 consensus 99.2 1.3E-08 3.3E-13 77.1 21.3 330 6-350 938-1453(1549)
136 KOG0389 consensus 99.1 3.2E-08 8.2E-13 74.5 17.8 319 23-352 400-889 (941)
137 COG4889 Predicted helicase [Ge 99.1 2.2E-09 5.7E-14 82.2 11.5 323 12-347 151-584 (1518)
138 pfam04851 ResIII Type III rest 99.1 1.7E-09 4.5E-14 83.0 9.8 99 22-189 3-101 (103)
139 COG0653 SecA Preprotein transl 99.0 4.3E-07 1.1E-11 66.9 18.6 318 18-353 77-547 (822)
140 KOG1123 consensus 98.9 8.4E-08 2.1E-12 71.7 13.1 299 21-351 301-653 (776)
141 pfam07517 SecA_DEAD SecA DEAD- 98.8 7.9E-08 2E-12 71.8 11.7 136 12-161 67-210 (381)
142 KOG1000 consensus 98.8 2.5E-06 6.4E-11 61.7 18.5 297 20-336 196-592 (689)
143 TIGR00963 secA preprotein tran 98.8 1.7E-06 4.5E-11 62.8 17.5 305 18-340 57-530 (904)
144 TIGR00603 rad25 DNA repair hel 98.6 3.7E-07 9.5E-12 67.3 9.6 297 21-351 268-630 (756)
145 smart00488 DEXDc2 DEAD-like he 98.6 4.7E-07 1.2E-11 66.6 9.2 75 20-98 7-85 (289)
146 smart00489 DEXDc3 DEAD-like he 98.6 4.7E-07 1.2E-11 66.6 9.2 75 20-98 7-85 (289)
147 TIGR02562 cas3_yersinia CRISPR 98.4 1.2E-06 2.9E-11 64.0 6.2 334 36-389 442-968 (1153)
148 KOG0386 consensus 98.2 6.5E-05 1.6E-09 52.2 13.3 121 228-348 708-833 (1157)
149 COG0553 HepA Superfamily II DN 98.2 1.4E-05 3.7E-10 56.6 8.9 122 230-351 692-822 (866)
150 pfam02399 Herpes_ori_bp Origin 98.1 0.00015 3.8E-09 49.8 12.2 240 39-313 51-345 (829)
151 pfam00176 SNF2_N SNF2 family N 98.0 0.00038 9.6E-09 47.1 13.7 148 27-188 2-156 (295)
152 KOG0952 consensus 97.9 2.8E-05 7.1E-10 54.7 5.7 27 29-55 341-369 (1230)
153 KOG0391 consensus 97.9 0.00013 3.2E-09 50.3 9.0 93 243-335 1275-1375(1958)
154 PRK10875 recD exonuclease V su 97.9 0.00092 2.3E-08 44.5 13.2 152 9-186 133-294 (607)
155 TIGR01447 recD exodeoxyribonuc 97.8 0.00048 1.2E-08 46.4 11.1 145 20-181 225-378 (753)
156 KOG1802 consensus 97.7 0.0014 3.6E-08 43.2 11.3 89 4-108 396-484 (935)
157 TIGR01448 recD_rel helicase, R 97.7 0.0011 2.7E-08 44.0 10.7 142 15-188 343-491 (769)
158 KOG0921 consensus 97.6 0.0069 1.8E-07 38.6 14.9 303 30-349 385-772 (1282)
159 KOG0391 consensus 97.5 0.00061 1.6E-08 45.7 8.0 139 12-162 589-751 (1958)
160 pfam07652 Flavi_DEAD Flaviviru 97.5 0.0031 7.9E-08 40.9 11.4 128 37-192 2-137 (146)
161 pfam02562 PhoH PhoH-like prote 97.5 0.0054 1.4E-07 39.3 12.5 143 20-186 2-153 (205)
162 TIGR02928 TIGR02928 orc1/cdc6 97.4 0.00086 2.2E-08 44.7 7.9 114 28-168 30-155 (383)
163 KOG1002 consensus 97.4 0.00043 1.1E-08 46.7 5.5 106 242-351 636-749 (791)
164 PRK12723 flagellar biosynthesi 97.3 0.0061 1.6E-07 39.0 10.9 88 40-135 177-266 (388)
165 KOG1805 consensus 97.2 0.0037 9.5E-08 40.4 9.2 125 19-161 666-809 (1100)
166 COG3587 Restriction endonuclea 97.2 0.0071 1.8E-07 38.5 10.2 71 294-364 483-566 (985)
167 PRK04537 ATP-dependent RNA hel 97.1 0.0035 8.9E-08 40.6 8.1 14 123-136 83-96 (574)
168 KOG1132 consensus 97.1 0.012 3.1E-07 36.9 10.4 78 22-99 21-135 (945)
169 PRK10590 ATP-dependent RNA hel 97.0 0.0069 1.8E-07 38.6 8.8 55 307-365 214-270 (457)
170 PRK11776 ATP-dependent RNA hel 97.0 0.0085 2.2E-07 38.0 9.2 52 310-364 214-266 (459)
171 PRK00411 cdc6 cell division co 97.0 0.028 7.1E-07 34.5 11.6 114 30-173 45-163 (394)
172 COG0610 Type I site-specific r 97.0 0.034 8.6E-07 34.0 23.9 308 38-366 274-667 (962)
173 PRK11192 ATP-dependent RNA hel 96.9 0.0047 1.2E-07 39.7 7.2 10 125-134 76-85 (417)
174 KOG0344 consensus 96.9 0.038 9.7E-07 33.6 12.2 41 123-163 172-224 (593)
175 PRK04837 ATP-dependent RNA hel 96.9 0.0086 2.2E-07 38.0 8.3 11 124-134 84-94 (423)
176 PRK06995 flhF flagellar biosyn 96.8 0.039 9.9E-07 33.6 11.0 42 93-134 224-265 (404)
177 pfam12340 DUF3638 Protein of u 96.7 0.018 4.5E-07 35.8 9.0 132 23-163 24-187 (229)
178 PRK11634 ATP-dependent RNA hel 96.7 0.0061 1.6E-07 39.0 6.5 46 37-85 74-136 (629)
179 PRK09401 reverse gyrase; Revie 96.7 0.0036 9.2E-08 40.5 5.2 53 74-132 327-383 (1176)
180 COG1419 FlhF Flagellar GTP-bin 96.7 0.05 1.3E-06 32.8 11.0 91 36-135 202-293 (407)
181 KOG0388 consensus 96.6 0.01 2.6E-07 37.5 7.2 113 36-159 585-706 (1185)
182 KOG1803 consensus 96.6 0.01 2.5E-07 37.5 7.0 61 23-92 186-247 (649)
183 PTZ00110 helicase; Provisional 96.6 0.033 8.3E-07 34.1 9.6 71 244-318 255-335 (602)
184 TIGR01054 rgy reverse gyrase; 96.6 0.004 1E-07 40.2 4.9 87 287-373 525-623 (1843)
185 cd01126 TraG_VirD4 The TraG/Tr 96.6 0.0078 2E-07 38.2 6.2 47 39-96 1-47 (384)
186 KOG1015 consensus 96.5 0.018 4.7E-07 35.7 7.9 117 230-346 1126-1270(1567)
187 PRK12402 replication factor C 96.5 0.0047 1.2E-07 39.7 4.7 39 147-186 124-162 (337)
188 pfam02534 TraG TraG/TraD famil 96.5 0.0045 1.2E-07 39.8 4.6 56 38-108 45-100 (468)
189 PRK01297 ATP-dependent RNA hel 96.5 0.017 4.2E-07 36.0 7.4 71 245-318 160-240 (472)
190 TIGR00348 hsdR type I site-spe 96.5 0.063 1.6E-06 32.1 10.3 140 39-188 326-496 (813)
191 COG0513 SrmB Superfamily II DN 96.4 0.057 1.4E-06 32.5 9.6 68 247-318 102-180 (513)
192 COG1444 Predicted P-loop ATPas 96.4 0.087 2.2E-06 31.2 11.2 152 11-190 203-357 (758)
193 cd00009 AAA The AAA+ (ATPases 96.4 0.017 4.3E-07 36.0 6.9 31 145-176 81-111 (151)
194 TIGR02538 type_IV_pilB type IV 96.3 0.0069 1.7E-07 38.6 4.8 21 190-210 188-208 (577)
195 pfam00580 UvrD-helicase UvrD/R 96.3 0.022 5.6E-07 35.2 7.3 68 23-97 1-68 (494)
196 PRK05580 primosome assembly pr 96.3 0.029 7.4E-07 34.4 7.9 102 226-330 194-298 (699)
197 pfam09848 DUF2075 Uncharacteri 96.3 0.067 1.7E-06 31.9 9.7 103 40-175 4-113 (348)
198 PRK07471 DNA polymerase III su 96.3 0.066 1.7E-06 32.0 9.6 127 38-192 40-181 (363)
199 PRK10689 transcription-repair 96.3 0.098 2.5E-06 30.8 10.6 52 36-99 13-64 (1148)
200 PRK07940 DNA polymerase III su 96.2 0.075 1.9E-06 31.6 9.4 117 39-193 41-163 (395)
201 cd03115 SRP The signal recogni 96.2 0.11 2.8E-06 30.5 12.3 127 40-201 3-136 (173)
202 PRK10536 hypothetical protein; 96.2 0.11 2.8E-06 30.5 12.3 141 20-185 57-209 (262)
203 TIGR02785 addA_Gpos recombinat 96.2 0.014 3.5E-07 36.6 5.5 102 23-133 2-112 (1295)
204 COG1110 Reverse gyrase [DNA re 96.1 0.014 3.5E-07 36.6 5.5 30 323-352 527-560 (1187)
205 TIGR03499 FlhF flagellar biosy 96.0 0.082 2.1E-06 31.4 9.0 14 257-270 136-149 (282)
206 pfam04466 Terminase_3 Phage te 96.0 0.13 3.4E-06 30.0 11.1 137 38-195 3-143 (387)
207 TIGR02782 TrbB_P P-type conjug 96.0 0.026 6.7E-07 34.7 6.2 119 23-157 124-250 (315)
208 PRK10917 ATP-dependent DNA hel 95.9 0.027 6.8E-07 34.7 6.2 90 240-337 302-396 (677)
209 KOG1002 consensus 95.9 0.07 1.8E-06 31.8 8.3 127 20-160 182-328 (791)
210 PRK08769 DNA polymerase III su 95.9 0.096 2.4E-06 30.9 8.9 129 22-186 4-150 (319)
211 KOG3089 consensus 95.9 0.0084 2.1E-07 38.0 3.5 42 115-156 186-228 (271)
212 KOG0331 consensus 95.9 0.15 3.8E-06 29.6 10.9 110 240-356 161-288 (519)
213 pfam03237 Terminase_6 Terminas 95.8 0.15 3.9E-06 29.5 10.0 105 42-162 2-108 (380)
214 KOG0701 consensus 95.8 0.0046 1.2E-07 39.8 1.8 101 240-340 288-400 (1606)
215 COG1875 NYN ribonuclease and A 95.8 0.17 4.2E-06 29.3 11.4 28 469-496 353-380 (436)
216 COG1198 PriA Primosomal protei 95.8 0.029 7.3E-07 34.4 5.7 94 226-320 225-321 (730)
217 PRK11331 5-methylcytosine-spec 95.7 0.17 4.4E-06 29.2 10.0 15 316-330 229-243 (459)
218 cd00079 HELICc Helicase superf 95.6 0.19 5E-06 28.9 9.7 73 75-157 29-105 (131)
219 pfam00437 GSPII_E Type II/IV s 95.5 0.057 1.4E-06 32.5 6.6 24 165-188 124-147 (283)
220 PRK13826 Dtr system oriT relax 95.5 0.21 5.4E-06 28.6 12.9 213 6-265 366-610 (1102)
221 PRK00440 rfc replication facto 95.4 0.17 4.4E-06 29.2 8.8 40 148-189 101-140 (318)
222 PRK06731 flhF flagellar biosyn 95.4 0.22 5.7E-06 28.5 9.5 127 40-200 78-208 (270)
223 PRK04195 replication factor C 95.3 0.11 2.8E-06 30.5 7.5 38 148-188 99-139 (403)
224 PRK10919 ATP-dependent DNA hel 95.3 0.12 3.1E-06 30.2 7.7 69 22-97 2-70 (672)
225 COG1474 CDC6 Cdc6-related prot 95.3 0.2 5.1E-06 28.8 8.7 103 31-163 33-138 (366)
226 PRK07414 cob(I)yrinic acid a,c 95.2 0.1 2.6E-06 30.8 7.0 57 143-199 110-168 (178)
227 TIGR00643 recG ATP-dependent D 95.2 0.034 8.7E-07 33.9 4.4 87 241-335 353-444 (721)
228 COG2109 BtuR ATP:corrinoid ade 95.1 0.14 3.6E-06 29.8 7.6 54 146-199 120-175 (198)
229 KOG0388 consensus 95.0 0.13 3.4E-06 29.9 7.2 119 231-349 1029-1152(1185)
230 PRK09112 DNA polymerase III su 95.0 0.3 7.5E-06 27.6 9.5 133 39-192 47-183 (352)
231 COG4962 CpaF Flp pilus assembl 95.0 0.055 1.4E-06 32.6 5.0 58 125-191 60-119 (355)
232 pfam10412 TrwB_AAD_bind Type I 94.9 0.021 5.4E-07 35.3 2.9 52 29-89 7-58 (386)
233 TIGR02397 dnaX_nterm DNA polym 94.9 0.11 2.9E-06 30.5 6.6 111 40-188 39-153 (363)
234 cd01122 GP4d_helicase GP4d_hel 94.8 0.15 3.8E-06 29.6 7.0 140 9-161 2-153 (271)
235 TIGR02788 VirB11 P-type DNA tr 94.7 0.03 7.7E-07 34.3 3.2 169 137-320 110-311 (328)
236 pfam00448 SRP54 SRP54-type pro 94.7 0.34 8.8E-06 27.2 12.8 126 40-200 4-136 (196)
237 TIGR00073 hypB hydrogenase acc 94.7 0.038 9.6E-07 33.7 3.6 170 42-266 39-220 (225)
238 cd01130 VirB11-like_ATPase Typ 94.6 0.17 4.4E-06 29.2 6.9 58 21-88 8-66 (186)
239 PRK13894 conjugal transfer ATP 94.6 0.29 7.4E-06 27.7 8.0 11 126-136 38-48 (320)
240 PRK13889 conjugal transfer rel 94.6 0.37 9.3E-06 27.0 10.3 125 17-186 342-468 (992)
241 KOG4439 consensus 94.6 0.33 8.4E-06 27.3 8.3 84 261-345 763-850 (901)
242 PRK13851 type IV secretion sys 94.6 0.064 1.6E-06 32.1 4.6 36 243-281 236-275 (343)
243 cd01127 TrwB Bacterial conjuga 94.6 0.057 1.4E-06 32.5 4.3 72 9-89 13-85 (410)
244 pfam05970 DUF889 PIF1 helicase 94.5 0.18 4.6E-06 29.1 6.8 107 45-186 2-119 (418)
245 PRK13897 type IV secretion sys 94.5 0.016 4.1E-07 36.1 1.4 49 38-97 158-206 (628)
246 PRK13833 conjugal transfer pro 94.5 0.32 8.2E-06 27.4 8.0 12 125-136 32-43 (323)
247 KOG1133 consensus 94.4 0.084 2.1E-06 31.3 4.9 43 22-64 15-61 (821)
248 KOG0243 consensus 94.4 0.043 1.1E-06 33.3 3.4 122 23-159 105-240 (1041)
249 TIGR00382 clpX ATP-dependent C 94.4 0.022 5.6E-07 35.2 1.9 18 35-52 150-167 (452)
250 KOG1001 consensus 94.3 0.16 4.2E-06 29.4 6.1 109 41-159 156-265 (674)
251 COG0470 HolB ATPase involved i 94.3 0.43 1.1E-05 26.5 9.1 45 146-194 107-153 (325)
252 TIGR03015 pepcterm_ATPase puta 94.2 0.44 1.1E-05 26.5 11.7 136 19-186 20-163 (269)
253 PRK11057 ATP-dependent DNA hel 94.2 0.15 3.8E-06 29.6 5.8 13 74-86 115-127 (607)
254 smart00382 AAA ATPases associa 94.2 0.26 6.5E-06 28.0 6.9 17 37-53 2-18 (148)
255 KOG0333 consensus 94.1 0.46 1.2E-05 26.3 8.3 62 237-302 315-380 (673)
256 PRK13766 Hef nuclease; Provisi 93.9 0.5 1.3E-05 26.1 13.2 28 224-252 369-396 (764)
257 TIGR00580 mfd transcription-re 93.9 0.33 8.3E-06 27.3 7.1 169 231-428 542-723 (997)
258 PRK13900 type IV secretion sys 93.7 0.14 3.4E-06 29.9 4.8 37 243-282 235-275 (332)
259 cd00561 CobA_CobO_BtuR ATP:cor 93.6 0.28 7.3E-06 27.7 6.3 55 144-198 91-147 (159)
260 PRK11054 helD DNA helicase IV; 93.6 0.55 1.4E-05 25.8 7.7 81 21-108 195-275 (684)
261 KOG4439 consensus 93.4 0.61 1.6E-05 25.5 8.0 136 23-160 326-475 (901)
262 PRK10436 hypothetical protein; 93.4 0.19 4.8E-06 29.0 5.1 27 147-173 178-207 (461)
263 COG3973 Superfamily I DNA and 93.4 0.62 1.6E-05 25.5 7.8 93 9-105 192-290 (747)
264 pfam05876 Terminase_GpA Phage 93.3 0.56 1.4E-05 25.8 7.4 123 22-161 16-147 (552)
265 TIGR02533 type_II_gspE general 93.1 0.087 2.2E-06 31.2 3.0 17 124-140 49-65 (495)
266 pfam03668 ATP_bind_2 P-loop AT 93.0 0.71 1.8E-05 25.1 14.4 236 40-280 4-283 (284)
267 cd00268 DEADc DEAD-box helicas 92.9 0.31 7.8E-06 27.5 5.6 72 243-318 68-149 (203)
268 KOG0991 consensus 92.8 0.16 4.1E-06 29.4 4.0 43 141-184 104-148 (333)
269 TIGR01420 pilT_fam twitching m 92.7 0.11 2.8E-06 30.5 3.0 26 40-66 130-155 (350)
270 COG1074 RecB ATP-dependent exo 92.6 0.6 1.5E-05 25.6 6.7 58 36-97 15-76 (1139)
271 PRK13709 conjugal transfer nic 92.5 0.22 5.5E-06 28.5 4.4 60 21-87 967-1030(1756)
272 PRK06647 DNA polymerase III su 92.5 0.83 2.1E-05 24.6 8.1 119 39-193 40-162 (560)
273 PRK05416 hypothetical protein; 92.3 0.88 2.2E-05 24.5 13.9 237 40-281 9-289 (292)
274 COG0630 VirB11 Type IV secreto 92.2 0.73 1.9E-05 25.0 6.8 33 20-52 125-158 (312)
275 PRK07270 DNA polymerase III su 92.2 0.9 2.3E-05 24.4 8.9 117 40-192 40-160 (557)
276 PRK05564 DNA polymerase III su 92.2 0.9 2.3E-05 24.4 8.3 44 146-193 91-136 (313)
277 PRK05917 DNA polymerase III su 92.1 0.85 2.2E-05 24.5 7.0 44 146-193 93-138 (290)
278 pfam01695 IstB IstB-like ATP b 92.1 0.91 2.3E-05 24.3 7.1 39 14-52 18-62 (178)
279 cd01129 PulE-GspE PulE/GspE Th 92.0 0.37 9.5E-06 26.9 5.1 49 11-63 55-105 (264)
280 KOG0330 consensus 92.0 0.7 1.8E-05 25.1 6.5 96 233-332 118-232 (476)
281 pfam07728 AAA_5 AAA domain (dy 92.0 0.49 1.2E-05 26.2 5.6 14 39-52 1-14 (139)
282 COG1200 RecG RecG-like helicas 91.7 0.4 1E-05 26.7 4.9 89 241-337 308-401 (677)
283 COG0378 HypB Ni2+-binding GTPa 91.6 0.45 1.1E-05 26.4 5.1 27 241-267 171-199 (202)
284 PRK05563 DNA polymerase III su 91.6 0.98 2.5E-05 24.1 6.9 119 39-193 40-162 (541)
285 PRK09183 transposase/IS protei 91.6 0.25 6.4E-06 28.1 3.8 39 14-52 72-116 (258)
286 KOG0327 consensus 91.6 0.19 4.9E-06 28.9 3.2 67 287-354 115-181 (397)
287 PRK12377 putative replication 91.5 1.1 2.7E-05 23.9 10.3 62 19-91 75-145 (248)
288 KOG2543 consensus 91.3 0.43 1.1E-05 26.5 4.8 142 25-192 12-161 (438)
289 TIGR00064 ftsY signal recognit 91.3 1.1 2.9E-05 23.7 7.7 126 40-200 85-225 (284)
290 TIGR00614 recQ_fam ATP-depende 91.3 0.61 1.6E-05 25.5 5.5 14 77-90 30-46 (497)
291 TIGR00368 TIGR00368 Mg chelata 91.2 0.16 4.1E-06 29.4 2.5 35 29-65 204-239 (505)
292 PRK03321 putative aminotransfe 91.2 1.1 2.9E-05 23.7 12.1 76 76-158 100-186 (352)
293 KOG0989 consensus 91.1 0.75 1.9E-05 24.9 5.9 45 146-191 127-171 (346)
294 COG1484 DnaC DNA replication p 91.1 0.96 2.4E-05 24.2 6.4 72 13-94 74-152 (254)
295 PRK06526 transposase; Provisio 91.1 0.26 6.6E-06 28.0 3.5 39 14-52 69-113 (254)
296 cd00046 DEXDc DEAD-like helica 90.8 0.63 1.6E-05 25.4 5.2 75 240-318 26-109 (144)
297 PRK13639 cbiO cobalt transport 90.7 0.52 1.3E-05 26.0 4.7 53 146-198 153-205 (275)
298 COG0553 HepA Superfamily II DN 90.6 0.2 5.1E-06 28.8 2.5 139 17-162 333-486 (866)
299 TIGR03600 phage_DnaB phage rep 90.5 1.3 3.3E-05 23.3 6.9 61 230-290 206-271 (421)
300 TIGR00678 holB DNA polymerase 90.4 1.3 3.4E-05 23.2 6.7 120 38-190 15-159 (216)
301 COG2804 PulE Type II secretory 90.4 0.86 2.2E-05 24.5 5.6 25 74-98 160-184 (500)
302 PRK08181 transposase; Validate 90.3 0.3 7.8E-06 27.5 3.3 40 13-52 75-121 (269)
303 PRK06090 DNA polymerase III su 90.3 1.4 3.5E-05 23.2 6.8 117 38-191 26-149 (319)
304 PRK08058 DNA polymerase III su 90.3 1.4 3.5E-05 23.1 10.6 119 38-192 29-152 (329)
305 cd03289 ABCC_CFTR2 The CFTR su 90.3 0.52 1.3E-05 26.0 4.4 41 146-187 154-194 (275)
306 PRK11176 lipid transporter ATP 90.3 1.4 3.5E-05 23.1 7.1 44 470-525 479-522 (581)
307 PRK11160 cysteine/glutathione 90.1 1.4 3.6E-05 23.0 7.3 44 470-525 476-519 (575)
308 PRK05896 DNA polymerase III su 90.0 1.4 3.6E-05 23.0 8.7 118 38-191 39-160 (613)
309 PRK12726 flagellar biosynthesi 90.0 1.4 3.7E-05 23.0 10.3 15 118-132 93-107 (407)
310 TIGR01389 recQ ATP-dependent D 89.8 0.46 1.2E-05 26.3 3.8 45 73-121 102-153 (607)
311 cd03291 ABCC_CFTR1 The CFTR su 89.7 0.36 9.2E-06 27.0 3.3 26 36-63 62-87 (282)
312 PRK11773 uvrD DNA-dependent he 89.7 0.62 1.6E-05 25.4 4.5 69 21-96 8-76 (722)
313 COG0467 RAD55 RecA-superfamily 89.6 0.73 1.9E-05 25.0 4.7 54 36-99 22-75 (260)
314 COG0210 UvrD Superfamily I DNA 89.6 1.5 3.9E-05 22.8 7.1 71 22-99 2-72 (655)
315 PRK13644 cbiO cobalt transport 89.3 1.6 4.2E-05 22.6 6.8 41 146-186 152-192 (274)
316 cd03245 ABCC_bacteriocin_expor 89.3 1.6 4.2E-05 22.6 7.7 25 36-62 29-53 (220)
317 cd03214 ABC_Iron-Siderophores_ 89.3 0.63 1.6E-05 25.4 4.2 136 36-198 24-166 (180)
318 PRK08451 DNA polymerase III su 89.2 1.6 4.2E-05 22.6 8.4 186 38-265 37-240 (523)
319 COG3421 Uncharacterized protei 89.2 0.63 1.6E-05 25.4 4.1 64 291-368 327-390 (812)
320 KOG0347 consensus 88.9 0.62 1.6E-05 25.5 4.0 53 246-302 265-321 (731)
321 smart00492 HELICc3 helicase su 88.5 1.2 3.2E-05 23.4 5.3 46 279-324 32-80 (141)
322 PRK05748 replicative DNA helic 88.3 1.9 4.8E-05 22.2 6.3 58 230-287 215-277 (448)
323 PRK10790 putative multidrug tr 88.1 1 2.6E-05 24.1 4.6 14 1-14 1-14 (593)
324 PRK08056 threonine-phosphate d 88.1 1.9 5E-05 22.1 8.7 129 7-158 34-184 (356)
325 PRK07003 DNA polymerase III su 87.9 1.5 3.8E-05 22.9 5.4 110 245-373 222-344 (816)
326 cd01374 KISc_CENP_E Kinesin mo 87.9 0.46 1.2E-05 26.3 2.8 25 30-54 65-91 (321)
327 PRK08082 consensus 87.8 2 5.1E-05 22.0 7.8 60 230-290 215-280 (453)
328 pfam02606 LpxK Tetraacyldisacc 87.8 2 5.2E-05 22.0 10.6 244 10-302 17-280 (318)
329 KOG0745 consensus 87.6 1.2 3.1E-05 23.5 4.8 30 230-262 271-305 (564)
330 PRK08506 replicative DNA helic 87.6 2.1 5.3E-05 21.9 9.1 60 230-290 205-269 (473)
331 cd03230 ABC_DR_subfamily_A Thi 87.6 2.1 5.3E-05 21.9 6.1 54 146-199 111-164 (173)
332 COG1219 ClpX ATP-dependent pro 87.5 0.32 8.2E-06 27.4 1.8 15 38-52 98-112 (408)
333 cd00106 KISc Kinesin motor dom 87.5 0.54 1.4E-05 25.9 2.9 25 30-54 70-96 (328)
334 pfam11496 HDA2-3 Class II hist 87.5 1.9 4.8E-05 22.2 5.7 125 224-349 89-224 (278)
335 TIGR01192 chvA glucan exporter 87.4 0.52 1.3E-05 26.0 2.8 32 316-351 339-370 (592)
336 cd03254 ABCC_Glucan_exporter_l 87.4 1.6 4.2E-05 22.6 5.3 26 36-63 28-53 (229)
337 pfam04665 Pox_A32 Poxvirus A32 87.4 0.9 2.3E-05 24.4 4.0 28 38-66 14-41 (241)
338 PRK04328 hypothetical protein; 87.3 1.4 3.5E-05 23.1 4.9 53 36-98 23-75 (250)
339 cd01363 Motor_domain Myosin an 87.2 0.63 1.6E-05 25.4 3.1 26 29-54 14-41 (186)
340 PRK06305 DNA polymerase III su 87.2 2.2 5.6E-05 21.8 9.8 118 39-192 41-163 (462)
341 cd01364 KISc_BimC_Eg5 Kinesin 87.1 0.55 1.4E-05 25.8 2.8 24 30-53 73-98 (352)
342 PRK05342 clpX ATP-dependent pr 87.1 0.41 1.1E-05 26.7 2.1 16 37-52 109-124 (411)
343 cd01365 KISc_KIF1A_KIF1B Kines 87.0 0.59 1.5E-05 25.6 2.9 24 30-53 80-105 (356)
344 cd03251 ABCC_MsbA MsbA is an e 86.9 2.3 5.8E-05 21.7 6.1 25 36-62 27-51 (234)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.9 2.3 5.8E-05 21.7 6.2 50 146-198 86-135 (144)
346 cd01375 KISc_KIF9_like Kinesin 86.9 0.52 1.3E-05 26.0 2.6 24 30-53 72-97 (334)
347 cd01371 KISc_KIF3 Kinesin moto 86.9 0.56 1.4E-05 25.8 2.7 25 30-54 73-99 (333)
348 cd03272 ABC_SMC3_euk Eukaryoti 86.9 0.72 1.8E-05 25.0 3.3 53 146-200 178-230 (243)
349 cd01376 KISc_KID_like Kinesin 86.7 0.62 1.6E-05 25.5 2.9 25 30-54 72-98 (319)
350 cd01124 KaiC KaiC is a circadi 86.6 1.6 4.1E-05 22.7 4.9 49 40-98 2-50 (187)
351 cd01369 KISc_KHC_KIF5 Kinesin 86.5 0.61 1.5E-05 25.5 2.7 25 30-54 68-94 (325)
352 cd01372 KISc_KIF4 Kinesin moto 86.5 0.58 1.5E-05 25.7 2.6 25 30-54 65-91 (341)
353 KOG0246 consensus 86.5 0.93 2.4E-05 24.3 3.7 11 302-312 445-457 (676)
354 cd01368 KISc_KIF23_like Kinesi 86.5 0.6 1.5E-05 25.6 2.7 25 30-54 80-106 (345)
355 PRK11614 livF leucine/isoleuci 86.5 1.6 4E-05 22.7 4.8 54 146-199 153-206 (237)
356 pfam05621 TniB Bacterial TniB 86.5 2.4 6.1E-05 21.5 7.2 116 38-184 62-183 (302)
357 KOG1016 consensus 86.4 2.4 6.2E-05 21.5 6.5 106 243-348 718-844 (1387)
358 cd01373 KISc_KLP2_like Kinesin 86.4 0.62 1.6E-05 25.5 2.7 24 30-53 66-91 (337)
359 KOG2228 consensus 86.3 2.5 6.3E-05 21.4 7.3 49 9-58 13-72 (408)
360 cd03235 ABC_Metallic_Cations A 86.2 1.5 3.9E-05 22.8 4.7 53 146-198 148-200 (213)
361 CHL00181 cbbX CbbX; Provisiona 86.1 2.2 5.7E-05 21.7 5.4 46 150-195 124-175 (287)
362 TIGR02858 spore_III_AA stage I 86.0 1.8 4.5E-05 22.4 4.9 123 29-198 111-248 (282)
363 smart00129 KISc Kinesin motor, 85.9 0.89 2.3E-05 24.4 3.3 25 29-53 70-96 (335)
364 TIGR03167 tRNA_sel_U_synt tRNA 85.8 2.6 6.6E-05 21.3 6.6 49 243-292 73-122 (311)
365 PRK11784 tRNA 2-selenouridine 85.8 2.6 6.6E-05 21.3 6.6 50 242-292 87-137 (333)
366 cd00984 DnaB_C DnaB helicase C 85.8 2.6 6.6E-05 21.3 8.3 113 36-160 12-135 (242)
367 cd01528 RHOD_2 Member of the R 85.7 0.67 1.7E-05 25.2 2.6 41 240-280 54-95 (101)
368 COG1224 TIP49 DNA helicase TIP 85.6 0.72 1.8E-05 25.0 2.8 28 35-63 63-90 (450)
369 cd01366 KISc_C_terminal Kinesi 85.6 0.73 1.9E-05 25.0 2.8 25 29-53 68-94 (329)
370 cd01367 KISc_KIF2_like Kinesin 85.4 0.78 2E-05 24.8 2.8 24 31-54 77-102 (322)
371 PRK13898 type IV secretion sys 85.2 1.9 4.8E-05 22.2 4.8 27 245-271 340-370 (800)
372 cd03288 ABCC_SUR2 The SUR doma 85.2 2.8 7E-05 21.1 7.6 26 36-63 46-71 (257)
373 PRK07004 replicative DNA helic 84.9 2.8 7.2E-05 21.0 8.6 61 230-290 225-290 (460)
374 cd03244 ABCC_MRP_domain2 Domai 84.8 1.8 4.6E-05 22.4 4.5 25 36-62 29-53 (221)
375 KOG3349 consensus 84.6 2.9 7.4E-05 20.9 6.4 14 8-21 24-37 (170)
376 PRK05707 DNA polymerase III su 84.4 3 7.6E-05 20.9 8.7 127 24-186 5-143 (328)
377 PRK09544 znuC high-affinity zi 84.4 1.5 3.9E-05 22.8 4.0 54 146-199 136-190 (251)
378 PRK06674 DNA polymerase III su 84.3 3 7.7E-05 20.9 8.2 37 147-188 118-156 (563)
379 PRK13640 cbiO cobalt transport 84.2 2.6 6.7E-05 21.2 5.1 40 146-185 160-200 (283)
380 KOG1384 consensus 84.1 0.62 1.6E-05 25.4 1.9 137 38-176 8-178 (348)
381 cd01524 RHOD_Pyr_redox Member 84.0 0.76 1.9E-05 24.9 2.3 39 242-280 49-87 (90)
382 cd00032 CASc Caspase, interleu 84.0 3.1 7.9E-05 20.8 5.6 64 243-308 8-86 (243)
383 cd01370 KISc_KIP3_like Kinesin 83.9 0.93 2.4E-05 24.3 2.7 24 31-54 80-105 (338)
384 smart00115 CASc Caspase, inter 83.8 3.1 8E-05 20.7 5.6 63 244-308 8-85 (241)
385 pfam00225 Kinesin Kinesin moto 83.7 1.1 2.8E-05 23.8 2.9 25 30-54 65-91 (321)
386 TIGR00959 ffh signal recogniti 83.6 3.2 8.2E-05 20.7 7.1 156 7-200 77-243 (439)
387 PRK03158 histidinol-phosphate 83.4 3.3 8.3E-05 20.6 8.4 74 76-157 107-191 (359)
388 pfam06068 TIP49 TIP49 C-termin 83.1 1.1 2.9E-05 23.7 2.8 28 35-63 48-75 (395)
389 COG1122 CbiO ABC-type cobalt t 83.0 3.4 8.6E-05 20.5 8.3 37 148-184 156-193 (235)
390 TIGR02640 gas_vesic_GvpN gas v 83.0 2.8 7E-05 21.1 4.8 102 25-159 9-116 (265)
391 PRK07399 DNA polymerase III su 83.0 3.4 8.6E-05 20.5 7.6 123 39-187 28-161 (314)
392 cd03250 ABCC_MRP_domain1 Domai 83.0 1.5 3.8E-05 22.9 3.4 17 36-52 30-46 (204)
393 cd01518 RHOD_YceA Member of th 83.0 1.2 3.1E-05 23.5 3.0 46 234-279 51-97 (101)
394 PRK13853 type IV secretion sys 82.9 1.6 4E-05 22.8 3.5 27 245-271 321-351 (789)
395 TIGR00929 VirB4_CagE type IV s 82.8 2.1 5.2E-05 22.0 4.1 19 329-347 742-760 (931)
396 TIGR02768 TraA_Ti Ti-type conj 82.6 3.5 8.9E-05 20.4 7.6 31 270-300 407-437 (888)
397 COG2805 PilT Tfp pilus assembl 82.5 1.4 3.4E-05 23.2 3.1 24 40-64 128-151 (353)
398 PRK13657 cyclic beta-1,2-gluca 82.5 3.5 9E-05 20.4 6.7 10 470-479 471-480 (585)
399 pfam02463 SMC_N RecF/RecN/SMC 82.4 3.3 8.4E-05 20.6 5.0 31 18-52 8-38 (1162)
400 cd01523 RHOD_Lact_B Member of 82.4 1.1 2.9E-05 23.7 2.6 37 243-279 60-96 (100)
401 PRK13909 putative recombinatio 82.4 3.6 9.1E-05 20.3 5.5 48 40-93 1-48 (911)
402 TIGR02902 spore_lonB ATP-depen 82.3 1.4 3.7E-05 23.0 3.1 125 29-196 75-225 (532)
403 PRK13700 conjugal transfer pro 82.2 0.73 1.9E-05 25.0 1.6 73 8-89 156-228 (732)
404 cd03228 ABCC_MRP_Like The MRP 82.0 3.7 9.4E-05 20.3 7.8 39 146-185 112-150 (171)
405 PRK09536 btuD corrinoid ABC tr 81.9 0.75 1.9E-05 24.9 1.5 42 146-187 154-195 (409)
406 KOG1556 consensus 81.8 2.7 6.9E-05 21.2 4.4 149 75-261 8-169 (309)
407 pfam02572 CobA_CobO_BtuR ATP:c 81.7 1 2.6E-05 24.1 2.1 57 143-199 91-149 (172)
408 smart00491 HELICc2 helicase su 81.6 3.8 9.7E-05 20.2 5.2 46 278-323 28-80 (142)
409 PRK13830 conjugal transfer pro 81.5 1.7 4.4E-05 22.5 3.3 27 245-271 346-376 (818)
410 PRK05201 hslU ATP-dependent pr 81.4 0.94 2.4E-05 24.3 1.9 15 38-52 51-65 (442)
411 PRK13850 type IV secretion sys 81.4 1.1 2.9E-05 23.7 2.4 44 38-92 140-183 (670)
412 PRK00313 lpxK tetraacyldisacch 81.4 2.6 6.6E-05 21.3 4.2 104 44-157 60-171 (332)
413 cd01120 RecA-like_NTPases RecA 81.3 3.9 9.9E-05 20.1 9.3 48 40-97 2-49 (165)
414 TIGR02155 PA_CoA_ligase phenyl 81.1 1.6 4E-05 22.8 3.0 53 101-154 144-202 (431)
415 TIGR01074 rep ATP-dependent DN 81.0 4 0.0001 20.0 6.0 79 21-105 2-108 (677)
416 cd03253 ABCC_ATM1_transporter 81.0 4 0.0001 20.0 5.5 26 36-63 26-51 (236)
417 PRK13539 cytochrome c biogenes 80.8 4.1 0.0001 20.0 8.1 47 146-192 142-188 (206)
418 PRK06921 hypothetical protein; 80.7 4.1 0.0001 20.0 6.0 44 37-90 116-160 (265)
419 PRK08699 DNA polymerase III su 80.6 4.1 0.0001 19.9 7.9 128 25-186 4-150 (325)
420 cd03249 ABC_MTABC3_MDL1_MDL2 M 80.4 4.2 0.00011 19.9 6.2 25 36-62 28-52 (238)
421 KOG1001 consensus 80.3 0.3 7.7E-06 27.6 -0.9 80 246-325 541-622 (674)
422 PRK13876 conjugal transfer cou 80.3 0.44 1.1E-05 26.4 -0.1 42 38-90 145-186 (662)
423 PRK00652 lpxK tetraacyldisacch 80.2 4.2 0.00011 19.9 13.4 217 44-302 58-291 (334)
424 cd03248 ABCC_TAP TAP, the Tran 79.7 4.4 0.00011 19.8 7.1 27 35-63 38-64 (226)
425 TIGR02525 plasmid_TraJ plasmid 79.6 1.2 3E-05 23.6 1.9 59 37-101 150-219 (374)
426 PRK05986 cob(I)yrinic acid a,c 79.6 1 2.6E-05 24.0 1.6 56 144-199 110-167 (190)
427 PRK00149 dnaA chromosomal repl 79.4 4.5 0.00011 19.7 6.9 73 235-307 165-254 (447)
428 PRK06067 flagellar accessory p 79.1 4 0.0001 20.0 4.5 52 36-97 31-82 (241)
429 cd01534 4RHOD_Repeat_3 Member 79.0 2.1 5.2E-05 22.0 3.0 38 243-280 55-92 (95)
430 TIGR03375 type_I_sec_LssB type 78.6 4.7 0.00012 19.5 6.8 25 477-504 500-524 (694)
431 PRK07764 DNA polymerase III su 78.6 4.7 0.00012 19.5 10.3 120 38-193 38-163 (775)
432 TIGR03522 GldA_ABC_ATP gliding 78.5 4.8 0.00012 19.5 5.3 53 146-199 149-201 (301)
433 KOG2227 consensus 78.2 4.9 0.00012 19.5 7.1 16 147-162 255-270 (529)
434 PRK13695 putative NTPase; Prov 78.2 4.3 0.00011 19.8 4.5 127 39-192 5-139 (174)
435 PRK08694 consensus 78.0 4.9 0.00013 19.4 8.8 64 230-293 230-301 (468)
436 TIGR02168 SMC_prok_B chromosom 77.6 4.3 0.00011 19.8 4.3 13 40-52 26-38 (1191)
437 PRK06871 DNA polymerase III su 77.6 5.1 0.00013 19.3 9.6 125 32-192 15-148 (324)
438 cd01444 GlpE_ST GlpE sulfurtra 77.3 2 5.1E-05 22.0 2.6 38 243-280 55-93 (96)
439 PRK00091 miaA tRNA delta(2)-is 77.3 2.2 5.6E-05 21.8 2.7 14 39-52 6-19 (304)
440 PRK07263 consensus 77.1 5.2 0.00013 19.2 7.9 58 230-287 215-277 (453)
441 PRK13946 shikimate kinase; Pro 76.9 3.3 8.3E-05 20.6 3.5 27 26-52 9-35 (195)
442 TIGR01241 FtsH_fam ATP-depende 76.9 1.4 3.6E-05 23.1 1.6 15 38-52 93-107 (505)
443 COG2842 Uncharacterized ATPase 76.9 5.3 0.00014 19.2 8.0 31 146-177 163-193 (297)
444 PRK05166 histidinol-phosphate 76.7 5.4 0.00014 19.2 10.9 50 76-132 116-170 (374)
445 pfam06745 KaiC KaiC. This fami 76.6 4.7 0.00012 19.5 4.3 53 36-98 18-71 (231)
446 pfam03266 DUF265 Protein of un 76.3 5.1 0.00013 19.3 4.4 115 40-174 2-123 (168)
447 TIGR02982 heterocyst_DevA ABC 76.1 2.3 5.8E-05 21.7 2.5 25 36-62 30-54 (220)
448 TIGR01978 sufC FeS assembly AT 75.7 2.2 5.6E-05 21.8 2.4 34 237-270 210-246 (248)
449 pfam03796 DnaB_C DnaB-like hel 75.7 5.7 0.00014 19.0 8.3 112 36-160 18-141 (186)
450 cd03299 ABC_ModC_like Archeal 75.6 1.9 4.8E-05 22.2 2.0 54 146-199 145-199 (235)
451 TIGR02759 TraD_Ftype type IV c 75.6 1.5 3.7E-05 23.0 1.5 25 150-174 238-262 (613)
452 PRK13880 conjugal transfer cou 75.2 0.75 1.9E-05 24.9 -0.1 42 38-90 176-217 (636)
453 PRK10416 cell division protein 75.2 5.9 0.00015 18.9 9.7 44 245-291 295-343 (499)
454 cd01525 RHOD_Kc Member of the 75.1 2 5.1E-05 22.1 2.0 42 239-280 60-102 (105)
455 PRK01906 tetraacyldisaccharide 74.9 6 0.00015 18.9 5.5 102 44-156 65-175 (339)
456 TIGR03608 L_ocin_972_ABC putat 74.7 2.4 6.2E-05 21.5 2.4 26 36-63 23-48 (206)
457 cd03292 ABC_FtsE_transporter F 74.4 1.6 4.1E-05 22.7 1.4 25 36-62 26-50 (214)
458 PRK12323 DNA polymerase III su 74.2 6.2 0.00016 18.7 5.8 278 38-371 39-347 (721)
459 pfam01935 DUF87 Domain of unkn 74.0 6 0.00015 18.8 4.3 44 36-87 22-65 (218)
460 TIGR02211 LolD_lipo_ex lipopro 73.8 4.9 0.00012 19.4 3.8 24 36-59 30-54 (221)
461 PRK10867 signal recognition pa 73.5 6.4 0.00016 18.6 9.3 127 40-201 103-237 (453)
462 PRK06321 replicative DNA helic 73.5 6.4 0.00016 18.6 8.6 40 247-287 258-300 (472)
463 PRK13873 conjugal transfer ATP 73.4 4.1 0.0001 19.9 3.3 26 246-271 335-364 (815)
464 PRK06964 DNA polymerase III su 73.4 6.5 0.00016 18.6 7.8 41 146-190 130-172 (342)
465 TIGR03069 PS_II_S4 photosystem 73.1 6.6 0.00017 18.6 6.7 62 466-528 88-151 (257)
466 cd01131 PilT Pilus retraction 73.0 2.2 5.5E-05 21.8 1.8 23 40-63 4-26 (198)
467 PRK13891 conjugal transfer pro 72.8 4.1 0.0001 20.0 3.2 28 245-272 377-408 (852)
468 TIGR02868 CydC ABC transporter 72.6 4.1 0.00011 19.9 3.2 119 34-164 384-535 (566)
469 KOG3859 consensus 72.4 6.8 0.00017 18.5 5.6 65 4-94 25-89 (406)
470 PRK09862 putative ATP-dependen 72.1 6.9 0.00018 18.4 4.4 16 9-24 47-62 (506)
471 COG3451 VirB4 Type IV secretor 72.1 5.4 0.00014 19.2 3.7 29 245-273 329-361 (796)
472 pfam01078 Mg_chelatase Magnesi 72.0 6.5 0.00017 18.6 4.1 24 29-52 13-37 (207)
473 COG0714 MoxR-like ATPases [Gen 72.0 4.9 0.00013 19.4 3.4 27 26-52 32-58 (329)
474 PRK05728 DNA polymerase III su 71.9 7 0.00018 18.4 6.0 84 230-328 16-106 (143)
475 KOG0240 consensus 71.9 4.4 0.00011 19.7 3.2 33 22-54 58-100 (607)
476 PRK11000 maltose/maltodextrin 71.8 3.7 9.5E-05 20.2 2.8 53 146-198 149-202 (369)
477 PRK07994 DNA polymerase III su 71.6 7.1 0.00018 18.3 5.8 199 146-373 117-345 (643)
478 pfam05729 NACHT NACHT domain. 71.6 5.5 0.00014 19.1 3.6 44 39-87 2-45 (165)
479 TIGR02760 TraI_TIGR conjugativ 71.5 3.3 8.3E-05 20.6 2.4 64 20-87 1129-1197(2193)
480 PRK05595 replicative DNA helic 71.4 7.2 0.00018 18.3 7.5 36 250-285 235-273 (444)
481 pfam03029 ATP_bind_1 Conserved 71.2 1 2.6E-05 24.0 -0.2 83 43-135 2-101 (234)
482 KOG4280 consensus 71.1 3.7 9.5E-05 20.2 2.7 131 31-191 78-221 (574)
483 PRK10253 iron-enterobactin tra 70.6 7.4 0.00019 18.2 5.8 41 146-186 159-200 (265)
484 PRK08006 replicative DNA helic 70.4 7.5 0.00019 18.2 8.7 58 230-288 236-299 (471)
485 PRK05636 replicative DNA helic 70.2 7.6 0.00019 18.1 7.1 39 247-286 299-340 (507)
486 TIGR00596 rad1 DNA repair prot 69.8 1.6 4.1E-05 22.7 0.5 49 222-270 286-348 (939)
487 PRK10876 recB exonuclease V su 69.7 7.8 0.0002 18.1 6.3 59 27-89 9-71 (1181)
488 TIGR02257 cobalto_cobN cobalto 69.6 7.8 0.0002 18.1 8.4 238 38-306 26-284 (1310)
489 PRK08760 replicative DNA helic 69.5 7.8 0.0002 18.1 7.8 61 230-290 241-306 (476)
490 cd03238 ABC_UvrA The excision 69.4 7.9 0.0002 18.0 6.7 122 36-186 20-145 (176)
491 COG3505 VirD4 Type IV secretor 69.1 2 5.2E-05 22.0 0.9 49 39-98 155-203 (596)
492 COG1120 FepC ABC-type cobalami 69.0 8 0.0002 18.0 4.9 139 36-186 27-195 (258)
493 COG0606 Predicted ATPase with 69.0 6 0.00015 18.8 3.3 25 28-52 189-213 (490)
494 TIGR00708 cobA cob(I)alamin ad 68.9 3.6 9.2E-05 20.3 2.2 55 144-198 110-166 (191)
495 pfam03354 Terminase_1 Phage Te 68.9 8.1 0.00021 18.0 10.0 136 38-188 23-160 (473)
496 PRK13635 cbiO cobalt transport 68.7 3.6 9.3E-05 20.3 2.2 145 36-188 32-198 (279)
497 PRK11650 ugpC glycerol-3-phosp 68.6 8.2 0.00021 17.9 4.0 139 36-199 29-204 (358)
498 cd03274 ABC_SMC4_euk Eukaryoti 68.6 6.5 0.00017 18.6 3.5 36 151-186 152-187 (212)
499 PRK06904 replicative DNA helic 68.5 8.2 0.00021 17.9 7.0 105 37-155 221-341 (472)
500 PRK06645 DNA polymerase III su 68.5 8.2 0.00021 17.9 8.1 122 41-193 47-171 (507)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=0 Score=1048.74 Aligned_cols=541 Identities=30% Similarity=0.448 Sum_probs=473.3
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 9777--99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
++|+ +|++.|+++|+++||+.|||||++|||.+|+|+|+|++||||||||+||+||+|++|.... ..||+||
T Consensus 6 ~sF~~lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~------~~pqaLI 79 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQILV 79 (629)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC------CCCCEEE
T ss_conf 9877679899999999987999999999999999967998899788847899999999999866236------8986899
Q ss_pred ECCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 8499899999999999985446-987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
||||||||+||++++.+|+++. ++++.++|||+++..|.+.|++||||||||||||+||++++.++|++|++|||||||
T Consensus 80 L~PTRELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHH
T ss_conf 78998999999999999972179977999989977899999862799999969899999997296412007678986715
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHC
Q ss_conf 10010012357888752143342256311112220011112101233332333232566520000000000024554200
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~l 238 (573)
+||+|||.++++.|++.+|..+|++|||||||..|..++++||++|..|.+.....+.++|.|.|+.|...+|..+|.++
T Consensus 160 ~mL~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~ 239 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 53363659999999986740314466631465999999998756987974045555577630599996524579999999
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 10235641677513023345655555422666301048999999999986654488149985386500145788733897
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
|+...+.++||||||+..|+++++.|...||++.+|||+|+|.+|..+|++|++|+++||||||||||||||++|+||||
T Consensus 240 L~~~~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VIN 319 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred HHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEE
T ss_conf 86158884899982278899999999976996576568999999999999997599988987862105577256888999
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--C
Q ss_conf 05887478999860301037888602564059999999999998506641056899999888899865544310122--2
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS--I 396 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~~~~~~~~--~ 396 (573)
||+|.+.++||||+|||||||++|+||+||+++|.++++.||++++.++++.++|++++|++++.+++.++...... -
T Consensus 320 yDlP~d~e~YVHRiGRTGRaGr~G~Aitfv~~~e~~~l~~ier~~~~~~~~~~~p~~~~i~~~r~~~~~~~~~~~~~~~~ 399 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD 399 (629)
T ss_pred ECCCCCHHHCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68989743401025833168996469998888999999999999779860148969999999999999999988751254
Q ss_pred CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCC---CCC------CCCCCCCCCCCCCC--CCC
Q ss_conf 045577666665-----4200478999999986201111222-342211---112------11233322222223--345
Q gi|254780601|r 397 QGDEKKMVDVLL-----AKHDPEKIAAGFLRIHRAGLCAPEE-ITPVSL---VSG------RDRFRDDSRAFKVG--GGS 459 (573)
Q Consensus 397 ~~~~~~~~e~Ll-----~~~dpe~IAaALlkl~~~~~~~~e~-~~~~~~---~~~------r~r~r~~~R~~r~~--~~~ 459 (573)
.+.+..+++.+. ++.+++++|+||+++.++..+.... ..+..+ ... ..+.....+..+.. +..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~a~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 479 (629)
T PRK11634 400 LDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 (629)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999999997530366657999999999997513565556765334420010343333334444555666555567656
Q ss_pred CCCCCCEEEEEEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHH----HHHCCCCCCEEE
Q ss_conf 6677880499996702279868899997750028998883003641885067618999999999----851487641155
Q gi|254780601|r 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKY 535 (573)
Q Consensus 460 R~~~~g~~r~~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~----~~~~~k~~~~~~ 535 (573)
+.+.+.+.||+||+||+|+++|++||||||+++||++++||+|+|+++|||||||++.++.+++ ++.++++++++.
T Consensus 480 ~~~~~~~~~~~i~vG~~~~~~p~~ivgai~~~~~i~~~~iG~I~i~~~~s~ve~p~~~~~~~~~~l~~~~v~~~~~~~~~ 559 (629)
T PRK11634 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred CCCCCCCEEEEEECCHHCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCCCHHHHHHHHHHCEECCCCCCEEE
T ss_conf 56788855999957322199856567651365799830168527627753886674056999998764576575220267
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4666665444456
Q gi|254780601|r 536 LGGEKPDFRGYKS 548 (573)
Q Consensus 536 ~~~~~~~~r~~~~ 548 (573)
.+...|...+.++
T Consensus 560 ~~~~~~~~~~~~~ 572 (629)
T PRK11634 560 LGDAQPHTGGERR 572 (629)
T ss_pred CCCCCCCCCCCCC
T ss_conf 6667887887656
No 2
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=0 Score=953.71 Aligned_cols=442 Identities=34% Similarity=0.539 Sum_probs=416.9
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 997779--988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
||+|++ |++.|+++|+++||+.|||||+++||.+|+|+|+|++||||||||+||+||+++++.... ..||||
T Consensus 3 ~~sF~~l~L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~------~~~qaL 76 (459)
T PRK11776 3 MTAFSTLPLPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQAL 76 (459)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC------CCCCEE
T ss_conf 68863489799999999977999999899999999977998899889985899999999998411367------898599
Q ss_pred EECCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98499899999999999985446-98799998899879999961289759982231013321000122464318999613
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
|||||||||.||++++++++++. ++++.++|||.++..|...|+++|||||||||||+||++++.++|++++++|||||
T Consensus 77 IL~PTRELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEA 156 (459)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (459)
T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 99675999999999999998505882599998993279999997469999998958999887516632231038997062
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHH
Q ss_conf 11001001235788875214334225631111222001111210123333233323256652000000000002455420
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ 237 (573)
|+||+|||.++++.|++.+|+.+|++|||||||+++..+++.||++|+.|.+...+ ..++|+|+||.|+..+|..+|.+
T Consensus 157 D~mLd~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~v~~~~-~~~~I~q~~~~v~~~~K~~~L~~ 235 (459)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVKVESTH-DDSTIEQRFYEVDPDERLPALQR 235 (459)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCEEEEEEECHHHHHHHHHH
T ss_conf 45432786688999998688130268884568989999999977898999967877-79863799999771878999999
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 01023564167751302334565555542266630104899999999998665448814998538650014578873389
Q gi|254780601|r 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 (573)
Q Consensus 238 ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi 317 (573)
+|..+++.++||||||+..|+++++.|...||++.+|||+|+|.+|.+++++|++|+++||||||||||||||++|+|||
T Consensus 236 ll~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VI 315 (459)
T PRK11776 236 LLLHYRPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVI 315 (459)
T ss_pred HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEE
T ss_conf 99736876603761748999999999986799689987999999999999999779997998810434767713598899
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 70588747899986030103788860256405999999999999850664105689999988889986554431012220
Q gi|254780601|r 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397 (573)
Q Consensus 318 n~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~~~~~~~~~~ 397 (573)
|||+|.+.++|+||+|||||||++|+||+|++++|..+++.||++++.++++.++|+.+...
T Consensus 316 nyDlP~~~e~YvHRiGRTGRaG~~G~ait~vt~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~------------------ 377 (459)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRAAAIEDYLGRKLNWEPLPSLSPLS------------------ 377 (459)
T ss_pred EECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC------------------
T ss_conf 97898974552020525137899657999986899999999999978998641699967556------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHC
Q ss_conf 45577666665420047899999998620111122234221111211233322222223345667788049999670227
Q gi|254780601|r 398 GDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477 (573)
Q Consensus 398 ~~~~~~~e~Ll~~~dpe~IAaALlkl~~~~~~~~e~~~~~~~~~~r~r~r~~~R~~r~~~~~R~~~~g~~r~~InvGr~d 477 (573)
..+....|++++||+||+|
T Consensus 378 -------------------------------------------------------------~~~~~~~~~~l~i~~G~k~ 396 (459)
T PRK11776 378 -------------------------------------------------------------GVPLLPPMVTLCIDGGKKD 396 (459)
T ss_pred -------------------------------------------------------------CCCCCCCEEEEEEECCCCC
T ss_conf -------------------------------------------------------------7888998599999375314
Q ss_pred CCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf 986889999775002899888300364188506761899999999985148
Q gi|254780601|r 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528 (573)
Q Consensus 478 ~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~~~~~~ 528 (573)
+++|++||||||+++|+++++||+|+|+|+||||+|+.+.++.+++.+...
T Consensus 397 k~~~~divg~~~~~~g~~~~~iG~I~i~d~~s~v~v~~~~~~~~~~~~~~~ 447 (459)
T PRK11776 397 KLRPGDILGALTGDAGLDGAQVGKINVTDFHAYVAVERAVAKKALKKLQNG 447 (459)
T ss_pred CCCHHHHHHHHCCCCCCCHHHCCEEEEECCEEEEEECHHHHHHHHHHHCCC
T ss_conf 877788899861777988889331798366699993421099999984078
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=0 Score=833.52 Aligned_cols=360 Identities=31% Similarity=0.487 Sum_probs=338.4
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777--9988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
.++|+ ++|+.|+++|++.||++|||||+++||.+|+|+|+|++|+|||||||||+||+|++|..... .....+|.||
T Consensus 181 i~~F~~~~fp~~il~~i~~~GF~~PTPIQ~qaIPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~-~~~~~gP~aL 259 (602)
T PTZ00110 181 VVSFEYTSFPDYILKSIEAAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRPGDGPIVL 259 (602)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCCEEE
T ss_conf 266501599999999999769999998999998798569867998789788999999999999851634-3678997699
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
||+||||||+||++++..|++..+++++++|||+++..|+..|++||||||||||||+||++++.++|++|++|||||||
T Consensus 260 ILaPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~~~~Q~~~L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yLVLDEAD 339 (602)
T PTZ00110 260 VLAPTRELAEQIREQALQFGRSSKLKNSVAYGGVPKRFQTYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD 339 (602)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECHH
T ss_conf 97383999999999999971547854999979968799999871699999979238999996499874310289987577
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC-CCCCCCCCCCC-CCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 10010012357888752143342256311112220011112101-23333233323-25665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~-~p~~i~~~~~~-~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
+||||||.++|+.|++.+|.+|||+|||||||++|.+|++.||+ +|+.|.+.... ....+|+|.++.|...+|...|.
T Consensus 340 RMLDmGFe~qI~~Il~~i~pdRQTlLFSAT~p~~V~~LA~~~L~~~Pv~I~Vg~~~~~a~~~I~Q~v~vv~~~eK~~~L~ 419 (602)
T PTZ00110 340 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTTCHNIKQEVFVIEEHEKRAKLK 419 (602)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf 66354629999999985897877999955899899999999820698899936888777787058999965188999999
Q ss_pred HCCCC-CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 00102-35641677513023345655555422666301048999999999986654488149985386500145788733
Q gi|254780601|r 237 NILRY-HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 (573)
Q Consensus 237 ~ll~~-~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~ 315 (573)
.+|.. .+..++||||+|+..|++|+..|...|++|.+|||+|+|.+|+.+|++||+|+++||||||||||||||++|+|
T Consensus 420 ~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~~~G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI~dV~~ 499 (602)
T PTZ00110 420 ELLGQIMDGGKILIFSETKKGADTLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIMIATDVASRGLDVRDVKY 499 (602)
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCE
T ss_conf 99985278996899929738999999999867995798208899999999999997699988988222331555157987
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 8970588747899986030103788860256405999999999999
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~ 361 (573)
|||||+|.+.|+||||||||||||++|+|+||+++++.+..+.|.+
T Consensus 500 VINYD~P~~~edYVHRIGRTGRAG~kG~A~TF~Tpd~~~~a~~Lv~ 545 (602)
T PTZ00110 500 VINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRSARELVK 545 (602)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9995897980221013561506899316999977770778999999
No 4
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=0 Score=809.89 Aligned_cols=372 Identities=30% Similarity=0.483 Sum_probs=355.5
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
+|+ +|++.|+++|+++||++|||||++|||.+|+|+|+|++||||||||+||+||+|++|............++||||
T Consensus 2 sF~~lgL~~~ll~aL~~~G~~~PTpIQ~~aIP~iL~GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL 81 (457)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (457)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 37334989999999997799999999999999997799889988981189999999999998636765445688249997
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 49989999999999998544698799998899879999961289759982231013321000122464318999613110
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
+||||||.||++++..|+++.++++.+++||.++..|...|+.++||||||||||+||++++.++|++|++|||||||+|
T Consensus 82 ~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDEAD~m 161 (457)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (457)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEECCHHH
T ss_conf 68799999999999974255894599997997775999986189998998928889888626776575239998370565
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCC
Q ss_conf 01001235788875214334225631111222001111210123333233323256652000000000002455420010
Q gi|254780601|r 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 (573)
Q Consensus 161 l~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~ 240 (573)
|||||.++++.|+..+|..+|++|||||||++|..+++.||++|..|.+...+....+|+|+++.|...+|...|..++.
T Consensus 162 Ld~gF~~di~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~k~~~L~~ll~ 241 (457)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIG 241 (457)
T ss_pred HCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHH
T ss_conf 15665366899986387652689995048889999999976898899963676656130489999566789999999986
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 23564167751302334565555542266630104899999999998665448814998538650014578873389705
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
.....++||||||+..|+++++.|...|+++.+|||+|+|.+|..+|++|++|+++||||||||||||||++|+||||||
T Consensus 242 ~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyD 321 (457)
T PRK10590 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE 321 (457)
T ss_pred HCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 15866335884119999999999855699823232478999999999999869982999577011556635688799938
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 321 ~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
+|.++++||||+|||||||++|+||+|++++|...++.||++++.++++..+|.
T Consensus 322 ~P~~~e~YvHRiGRTGRaG~~G~ait~v~~~e~~~~~~ie~~~~~~~~~~~~~~ 375 (457)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPG 375 (457)
T ss_pred CCCCHHHEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999744500226706058995369998668999999999999779887403788
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=0 Score=798.81 Aligned_cols=372 Identities=31% Similarity=0.443 Sum_probs=352.8
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCEEE
Q ss_conf 9777--998899999997879878989999999997599699992898746899999999986104212-2556882799
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASAPLAL 78 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~-~~~~~~~~~l 78 (573)
+.|+ +|++.|+++|+++||+.|||||++|||.+|+|+|++++|+||||||+||+||++++++..... ......|+||
T Consensus 9 ~~F~~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aL 88 (423)
T PRK04837 9 QKFSDFALHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRAL 88 (423)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 84824796999999999779999999999999999679988998999874999999999999983745334556786189
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
||+||||||.||++++..|++..++++.++|||.++..|...|+++|||||||||||+||++++.++|++|+++||||||
T Consensus 89 IL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD 168 (423)
T PRK04837 89 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 168 (423)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf 99388999999999999974325845999989988799999871799989989189999986422123664289963446
Q ss_pred CCCCCHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 1001001235788875214--33422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p--~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
+||||||.+++..|++.+| ..+|++|||||++..+.+++..+|++|..|.+.....+..+|+|.++.+...+|...|.
T Consensus 169 ~lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~~~K~~~L~ 248 (423)
T PRK04837 169 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQ 248 (423)
T ss_pred HHHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHH
T ss_conf 54302639999999996896221089997036888999999997789879996577656654269999917277999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
.+++...+.++||||||+..|+.++.+|...|+++..|||+|+|++|..++++|++|+++|||||||||||||||+|+||
T Consensus 249 ~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~~V~~V 328 (423)
T PRK04837 249 TLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIPDVTHV 328 (423)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEE
T ss_conf 99984088746886162888999999997659817872254579999999999976999899870043277772679889
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
||||+|.+.++|+||+|||||||++|.||+|++++|...+..||++++.+++...+|
T Consensus 329 InyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~~~~l~~ie~~~~~~i~~~~~~ 385 (423)
T PRK04837 329 FNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYALNLPAIETYIGHSIPVSKYD 385 (423)
T ss_pred EEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 996998974551004654127899468999873999999999999968967501368
No 6
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=0 Score=794.86 Aligned_cols=372 Identities=31% Similarity=0.487 Sum_probs=352.3
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212-25568827999
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASAPLALA 79 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~-~~~~~~~~~li 79 (573)
+|+ +|++.|+++|+++||+.|||||++|||.+|+|+|+|++|+||||||+||+||++++|...... ......|++||
T Consensus 10 SF~~LgL~~~Ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLI 89 (574)
T PRK04537 10 TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (574)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 18666989999999997799989999999999995799889984898889999999999999837443457789961999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100-01224643189996131
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEAD 158 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~-~~l~l~~v~~lVlDEaD 158 (573)
|+||||||.||++++.+|+.+.++++++++||.++..|...|++++||||||||||+||+++ +.++|+++++|||||||
T Consensus 90 LvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD 169 (574)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (574)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH
T ss_conf 77989999999999999864589779999799668899998735999899898999999981798653331589962732
Q ss_pred CCCCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 100100123578887521433--422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~--~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
+||+|||.+++..|++.+|+. +|++|||||||.++.+++..||++|..+.+...+.+..+|+|.+|.+...+|...|.
T Consensus 170 ~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~ 249 (574)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLL 249 (574)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 65428779999999996665568558999832777999999997799869996566545776038999777789999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
.+|...+..++||||||+..|+.++..|...|+++..|||+|+|++|..+|++|++|+++||||||||||||||++|+||
T Consensus 250 ~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~V 329 (574)
T PRK04537 250 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYV 329 (574)
T ss_pred HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 99972677651153341899999999999779968997099999999999999976999799773500233571469979
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9705887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
||||+|.+.++||||+|||||+|++|+||+|++++|...++.||++++.+++..++|-
T Consensus 330 INYDlP~~~e~YVHRIGRTGRaGr~G~AITfv~~~e~~~l~~IE~~i~~~ip~~~~~~ 387 (574)
T PRK04537 330 YNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTA 387 (574)
T ss_pred EEECCCCCHHHHHCCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 9957969821411245350378993359998777998999999998678788866544
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=788.40 Aligned_cols=468 Identities=33% Similarity=0.449 Sum_probs=384.5
Q ss_pred CCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 7779--98899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
.|++ |++.++++|.++||+.|||||.++||.+|.|+|++++|+||||||+||+||+|+++..... ...+++|||
T Consensus 30 ~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~----~~~~~aLil 105 (513)
T COG0513 30 EFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE----RKYVSALIL 105 (513)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC----CCCCCEEEE
T ss_conf 9766599999999999659899898999658776369997998689871789999999999740045----577756997
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 499899999999999985446-9879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
+||||||.||++++.+++++. +++++++|||+++..|...|++|+||||||||||+||++++.+++++++++||||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHHH
T ss_conf 79999999999999999862458429999899898999998724998999796089999864885546501899676176
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CCCCCCHHCCCCCCCH-HHHHHH
Q ss_conf 0010012357888752143342256311112220011112101233332333232--5665200000000000-245542
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSD-RDNAIV 236 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~v~~~~-k~~~l~ 236 (573)
||||||.++++.|++.+|.++|++|||||||..|..++++||++|+.|.+..... ++++|+|+|+.|...+ |...|.
T Consensus 186 mld~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred HCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 63887689999999738977489999824898999999997368807996432233530047079998085677999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
.++....+.++||||||+..|++|+..|...||++.+|||+|+|++|.++++.|++|+++||||||||||||||++|+||
T Consensus 266 ~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 266 KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEE
T ss_conf 99827888839999576776999999999789659997388998899999999975998989980654468996667479
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHH-HHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHCC-
Q ss_conf 97058874789998603010378886025640599-99999999998506641-0568999998888998655443101-
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANVSVV-WEPAPSVEAIRERDAQRILQDPLFL- 393 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~-e~~~~~~i~~~~~~~~~-~~~~Ps~eeI~~~~~~~l~~~~~~~- 393 (573)
||||+|.++++||||+|||||||++|.||+|+++. |...++.|++..+..+. ...+|..+.................
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEES 425 (513)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 97879998041317345343489987279985562349999999998753244323477432034555554300012220
Q ss_pred -C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf -2-----2204557766666542004789999999862011112223422111121123332222222334566778804
Q gi|254780601|r 394 -D-----SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467 (573)
Q Consensus 394 -~-----~~~~~~~~~~e~Ll~~~dpe~IAaALlkl~~~~~~~~e~~~~~~~~~~r~r~r~~~R~~r~~~~~R~~~~g~~ 467 (573)
. ............+....+...+.+.............. . . .. ..+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~--------~~----~~~~~~---- 480 (513)
T COG0513 426 DISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVT-I--------D--------PE----LERRSP---- 480 (513)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-C--------C--------CC----CCCCCC----
T ss_conf 001222122455544320012222055655555443114455321-2--------3--------10----003565----
Q ss_pred EEEEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 99996702279868899997750028998883003641
Q gi|254780601|r 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505 (573)
Q Consensus 468 r~~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~ 505 (573)
++.++..+.++.+.++...+....++|.+++.
T Consensus 481 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (513)
T COG0513 481 ------NSADDIEYILKGLSYRAEERTAKNEAANIKLQ 512 (513)
T ss_pred ------CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf ------65323332001210000256652345544568
No 8
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=0 Score=779.55 Aligned_cols=372 Identities=32% Similarity=0.496 Sum_probs=351.7
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777--9988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
||+|+ +|++.|+++|+++||+.|||||++|||.+|+|+|++++|+||||||+||+||+|++|.....+ ....|++|
T Consensus 2 ~~sF~~l~L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~--~~~~~~~L 79 (417)
T PRK11192 2 VTTFEELDLDPSLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRIL 79 (417)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCEEE
T ss_conf 7887777989999999997799999999999999997799889989998679999999999998752103--68996499
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
||+||||||.||++++..|+.+.++++.+++||.++..|...|+.++||||||||||+||++++.+++++|++|||||||
T Consensus 80 Il~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD 159 (417)
T PRK11192 80 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 159 (417)
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 99471999999999999864005730599856878799999983699989978607777886367010457489996755
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-HHHHHHH
Q ss_conf 10010012357888752143342256311112-220011112101233332333232566520000000000-0245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~-~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~-~k~~~l~ 236 (573)
+||+|||.++++.|+..+|..+|++|||||++ ..+..+++.++++|..|.+........+|.|+|+.+... +|...|.
T Consensus 160 ~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 239 (417)
T PRK11192 160 RMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRADDLEHKTALLC 239 (417)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHH
T ss_conf 21113547899999864767723899973268478999999836798899964676666743699999376899999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
+++......++||||||+..|++++..|...|+++..|||+|+|.+|..++++|++|+++||||||++||||||++|+||
T Consensus 240 ~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~V 319 (417)
T PRK11192 240 HLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHV 319 (417)
T ss_pred HHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEE
T ss_conf 99853476652153112466768988653148835754001799999999999976999899981243467770469889
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9705887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
||||+|.+.++|+||+|||||+|++|.||+|+++.|...++.||++++.++++..+|.
T Consensus 320 Inyd~P~~~~~YvHRiGRTGR~G~~G~ait~v~~~d~~~~~~ie~~~~~~~~~~~~~~ 377 (417)
T PRK11192 320 INFDMPRSADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIERYIEEPLKRRVIDE 377 (417)
T ss_pred EEECCCCCHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9979999888923306772348995489998748999999999999779887312688
No 9
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=0 Score=777.84 Aligned_cols=372 Identities=32% Similarity=0.503 Sum_probs=351.6
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCEEE
Q ss_conf 9777--99889999999787987898999999999759969999289874689999999998610421225-56882799
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PASAPLAL 78 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~-~~~~~~~l 78 (573)
+.|+ +|++.|+++|+++||+.|||||+++||.+|+|+|+|++|+||||||+||+||+|++|........ ....|+||
T Consensus 84 ~~F~dl~L~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aL 163 (472)
T PRK01297 84 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 163 (472)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEE
T ss_conf 71864788999999999779999999999999999769988998999867999999999999971775101136895299
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 98499899999999999985446987999988998799999612-89759982231013321000122464318999613
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
||+||||||.||++++..|+++.++++.+++||.++..|.+.|+ ++|||||||||||+||++++.++|++++++|||||
T Consensus 164 IL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEA 243 (472)
T PRK01297 164 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEA 243 (472)
T ss_pred EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECH
T ss_conf 98799999999999999974627976999978988799999985589988997979999874348254255229999873
Q ss_pred CCCCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHH
Q ss_conf 110010012357888752143--342256311112220011112101233332333232566520000000000024554
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~p~--~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l 235 (573)
|+||+|||.+++..|+..+|. ++|++|||||++.++.++++.|+.+|..|.+...+....+++|+++.+...+|...|
T Consensus 244 D~LLd~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~~~~p~~v~i~~~~~~~~~v~q~~~~~~~~dk~~~L 323 (472)
T PRK01297 244 DRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLL 323 (472)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHH
T ss_conf 12102575999999999689855716999852577899999999779988999657766777602899981888999999
Q ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 20010235641677513023345655555422666301048999999999986654488149985386500145788733
Q gi|254780601|r 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 (573)
Q Consensus 236 ~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~ 315 (573)
.+++......++||||||+..|+.++..|...|+++..|||+|+|.+|..++++|++|+++||||||||||||||++|+|
T Consensus 324 ~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V~~ 403 (472)
T PRK01297 324 YNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 403 (472)
T ss_pred HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCE
T ss_conf 99998479873689617499999999876544961686437789999999999997699969988661336677578888
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
|||||+|.+.++||||+|||||+|++|+||+|++++|...+..||.+.+.+++....|
T Consensus 404 VInyD~P~~~~~YIHRiGRTGRaG~~G~aisfv~~~d~~~~~~ie~~l~~~i~~~~~~ 461 (472)
T PRK01297 404 VINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPP 461 (472)
T ss_pred EEEECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9996898976760102653126899637999863889999999999988978415886
No 10
>KOG0331 consensus
Probab=100.00 E-value=0 Score=757.92 Aligned_cols=358 Identities=34% Similarity=0.537 Sum_probs=337.1
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 99889999999787987898999999999759969999289874689999999998610421225568827999849989
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
.|++++..+|+..||+.|||||+++||++|.|+|+++.|+|||||||||+||+|+++...........+|++|||+||||
T Consensus 97 ~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331 97 GLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHCCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHH
T ss_conf 65478888888539998853441446511268865778235786205555579999870044434799986999768599
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 99999999999854469879999889987999996128975998223101332100012246431899961311001001
Q gi|254780601|r 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165 (573)
Q Consensus 86 La~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf 165 (573)
||.||+.++..++....++..|+|||.+...|.+.|++|++|+|||||||+||++.+.++|++|.|+||||||+||+|||
T Consensus 177 LA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGF 256 (519)
T KOG0331 177 LAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGF 256 (519)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCC
T ss_conf 99999999999707777407998689886378898755981898077178999974885645303999634776631353
Q ss_pred HHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCCHHCCCCCCCHHHHHHHHCCCCC
Q ss_conf 23578887521-4334225631111222001111210123333233323--25665200000000000245542001023
Q gi|254780601|r 166 RDDIEFILDSS-PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242 (573)
Q Consensus 166 ~~~i~~i~~~~-p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~--~~~~~i~~~~~~v~~~~k~~~l~~ll~~~ 242 (573)
.++|+.|+..+ +..+|++|||||||.+|..|++.||++|+.|.+.... ....+|.|....|....|...|..+|...
T Consensus 257 e~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~ 336 (519)
T KOG0331 257 EPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDI 336 (519)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 79999998755897522788865464889999999845964899612145544333146511268788988799999997
Q ss_pred ---CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf ---56416775130233456555554226663010489999999999866544881499853865001457887338970
Q gi|254780601|r 243 ---GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 (573)
Q Consensus 243 ---~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~ 319 (573)
...++||||+||+.|++|+..|...|++|.+||||++|.||+.+|+.||+|+..|||||||||||||||+|+|||||
T Consensus 337 ~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331 337 SSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred HCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEC
T ss_conf 35689868999643364999998877517661550066648899999975026885469881531256887666479967
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 58874789998603010378886025640599999999999985
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~ 363 (573)
|+|.++|+||||+|||||||++|+|++|++..+......+.+..
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331 417 DFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHH
T ss_conf 89999899886537654578882489997278877789999999
No 11
>KOG0330 consensus
Probab=100.00 E-value=0 Score=714.98 Aligned_cols=366 Identities=32% Similarity=0.540 Sum_probs=351.7
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
+|. ++++.|++|+..+||..||+||.++||..|+|+|||+.|+||||||+||+|||+++|+.+.. .|.||||
T Consensus 62 sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~------~~~~lVL 135 (476)
T KOG0330 62 SFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK------LFFALVL 135 (476)
T ss_pred CHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC------CCEEEEE
T ss_conf 3220376899999999847678744445206554379857999435888402317999999971987------7448996
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHH-CCCCCCCCCEEEEEECCCC
Q ss_conf 499899999999999985446987999988998799999612897599822310133210-0012246431899961311
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~-~~~l~l~~v~~lVlDEaD~ 159 (573)
+||||||.||.+++..|+...|+++++++||+++..|...|.+.|||||+|||||+||++ .+.++|..++|||+||||+
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHCHHHH
T ss_conf 48289999999999875356672799986583299998876248987983707899998743684088757876331776
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCC
Q ss_conf 00100123578887521433422563111122200111121012333323332325665200000000000245542001
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll 239 (573)
+|||.|.+++++|++.+|.++||+|||||||..|.+|...-+++|+.|.+.+...++++++|+|+.++..+|..+|..||
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHCCCCCEEEECCCHHCCHHHHHHHEEECCCCCCCHHHHHHH
T ss_conf 62115689999998746744148999864441367787641589717860430111677664557632666652389988
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 02356416775130233456555554226663010489999999999866544881499853865001457887338970
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~ 319 (573)
+.......||||||...++.++-.|...||.+.+|||+|+|+.|..++++|++|..+|||||||||||||||.|++||||
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330 296 NELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCEEEEEC
T ss_conf 76359847999834640899999998627643205660357788778998751477679861301046898771079953
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 5887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
|+|.+..+||||+|||||||++|++|+||+..|...+++||..++.+....+++.
T Consensus 376 DiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330 376 DIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 7898378888870430016777514898744556999999999854787567655
No 12
>KOG0338 consensus
Probab=100.00 E-value=0 Score=688.86 Aligned_cols=369 Identities=31% Similarity=0.496 Sum_probs=346.9
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
.|. ||+-+|++|+..+||..|||||.++||..|.|+|+++.|-||||||+||.||+|++|+-...+ ....++|||
T Consensus 182 sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLVL 258 (691)
T KOG0338 182 SFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLVL 258 (691)
T ss_pred HHHHCCCCHHHHHHHHHCCCCCCCCHHHHCCCHHHHCCHHHHEECCCCCCHHHHHHHHHHHHHCCCCC---CCCEEEEEE
T ss_conf 48860024699998874387888740331012775222256401146871145678899998527356---761269998
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHH-CCCCCCCCCEEEEEECCCC
Q ss_conf 499899999999999985446987999988998799999612897599822310133210-0012246431899961311
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~-~~~l~l~~v~~lVlDEaD~ 159 (573)
|||||||+||+.+.++|+.+..+.+++++||-+...|...|+++|||||+||||++|||. ...++|+++..|||||||+
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCCEEEEEECHHHH
T ss_conf 35089999999999998766040244452474578899998308987994650588875158876534325777333888
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC---CHHHHHHH
Q ss_conf 001001235788875214334225631111222001111210123333233323256652000000000---00245542
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIV 236 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~---~~k~~~l~ 236 (573)
||+-||.++++.|+..+|.+|||+||||||..+|.+|+.--|++|+.|.+.+...+.+.++|.|+.+.+ .++...|.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHEECCCCCCCCHHHHH
T ss_conf 99999999999999855102300121122578899999755179858985786544404447781005564444178999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
.++...-...+|||+.||+.++.+.-.|.-.|+++..|||.++|.||...+++|++++++||||||||||||||++|..|
T Consensus 419 ~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338 419 SLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCEEEE
T ss_conf 99987604336999720877889999998730106655054108889999998774568779872044446776551688
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHH---HHCCCCCCCCCC
Q ss_conf 9705887478999860301037888602564059999999999998---506641056899
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE---ANVSVVWEPAPS 374 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~---~~~~~~~~~~Ps 374 (573)
|||++|.+.+.|+||+|||+|||+.|.||+|+..+|+..++.|.+. ++.++....+|-
T Consensus 499 INy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~ 559 (691)
T KOG0338 499 INYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPP 559 (691)
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHCCCCH
T ss_conf 8426752689999874003324567643787445408899999851033055044237998
No 13
>KOG0328 consensus
Probab=100.00 E-value=0 Score=679.11 Aligned_cols=366 Identities=30% Similarity=0.501 Sum_probs=354.1
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 9777--99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
++|+ +|+++|++++.+.||++|+.||+.|||+|+.|+|||+|||.|||||++|.+.+++.++... +..||||
T Consensus 27 ~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~------r~tQ~li 100 (400)
T KOG0328 27 PTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV------RETQALI 100 (400)
T ss_pred CCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECCCCC------CEEEEEE
T ss_conf 6644348609999999972257816777610245633661478704788844789866314034342------0035789
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
|+||||||.||.+++..|+.+.++.+.+|.||.++.+.++.|..|+|+|.|||||++|+++++.|+...|+++||||||+
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEECCHHH
T ss_conf 54708999999999998324236448987357751034565325614750798159999986231011426898545899
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCH-HHHHHHHC
Q ss_conf 00100123578887521433422563111122200111121012333323332325665200000000000-24554200
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNI 238 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~-k~~~l~~l 238 (573)
||+.||.+.+..|+..+|+..|.+++|||+|.+|.+++++||.+|+.|.+.+++.+...|+|+|+.|...+ |+++|+.|
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdL 260 (400)
T KOG0328 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 260 (400)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHEEEECHHHHHHHHHHHH
T ss_conf 98756778899999847998669999645869999999874488526887057776666555424413225537689888
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 10235641677513023345655555422666301048999999999986654488149985386500145788733897
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
.+.....+++||||||..|++|.+.|.+..|.+.++||||+|++|+.+|++||+|+.+||+||||-|||||++.|++|||
T Consensus 261 Yd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN 340 (400)
T KOG0328 261 YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN 340 (400)
T ss_pred HHHHEHHEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCEEEEEEE
T ss_conf 64306114799962640436889998861733663057764567999998765478349997104442587500578994
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
||+|.+.|.|+|||||.||+|++|.||.|+...|.+.++.||++++..+.+.|+-
T Consensus 341 YDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328 341 YDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 3788548787665013565677606998751788999999999976411315601
No 14
>KOG0333 consensus
Probab=100.00 E-value=0 Score=673.04 Aligned_cols=359 Identities=33% Similarity=0.545 Sum_probs=335.6
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC--C-CCCCCCC
Q ss_conf 99777--99889999999787987898999999999759969999289874689999999998610421--2-2556882
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R-FSPASAP 75 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~--~-~~~~~~~ 75 (573)
|+.|| +||.++++.+.+.||..|||||.++||..++.+|+|+.|.||||||+||+||++..|..... + ....-+|
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHCCCHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCC
T ss_conf 33732238988999999734899984678863110101477236873167753200015889987089841444234686
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 79998499899999999999985446987999988998799999612897599822310133210001224643189996
Q gi|254780601|r 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155 (573)
Q Consensus 76 ~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlD 155 (573)
+|+||+||||||.||.++..+|++.++++++.++||.++++|--.|..||+|+|+|||||+|.+++..|-|+++.|+|+|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 00120337999999999998750301432899854633665302464154144247407888777788875058467624
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC---C----------------------CCEEEEECCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 13110010012357888752143---3----------------------4225631111222001111210123333233
Q gi|254780601|r 156 EADEMLDLGFRDDIEFILDSSPK---K----------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIA 210 (573)
Q Consensus 156 EaD~ml~~gf~~~i~~i~~~~p~---~----------------------~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~ 210 (573)
|||+|+||||.+|+..||.++|. . +||++||||||+.|..|++.||.+|+.+.+.
T Consensus 404 eadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig 483 (673)
T KOG0333 404 EADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG 483 (673)
T ss_pred CHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf 06665424666778889983876345888631021888875103121025789984478767999999985277699954
Q ss_pred CCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32325665200000000000245542001023564167751302334565555542266630104899999999998665
Q gi|254780601|r 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 (573)
Q Consensus 211 ~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~f 290 (573)
......+.++|.++++...+|...|..+|+......+|||+|+++.|+.|++.|.+.||.|..|||+-+|+||+.+|+.|
T Consensus 484 ~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~f 563 (673)
T KOG0333 484 SAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADF 563 (673)
T ss_pred CCCCCCCCHHEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 67898602111788815568899999999847999879998313248999999864432479961785277899999998
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH
Q ss_conf 448814998538650014578873389705887478999860301037888602564059999999999
Q gi|254780601|r 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 (573)
Q Consensus 291 r~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i 359 (573)
|+|..+||||||||+||||||||+||||||++.++++|+||||||||||+.|+||+|+++.+...+..+
T Consensus 564 r~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333 564 REGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 715787799832212577777612146220556589998874234446667536898640111778999
No 15
>KOG0342 consensus
Probab=100.00 E-value=0 Score=646.04 Aligned_cols=367 Identities=34% Similarity=0.505 Sum_probs=335.7
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
.|+ .|++..+.|++++||+.+|+||+++||++|.|+|+++.|+||||||+||+||.++.+..... .+.....+||+
T Consensus 83 ~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~--~~r~~~~vlIi 160 (543)
T KOG0342 83 RFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF--KPRNGTGVLII 160 (543)
T ss_pred HHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHCCC--CCCCCEEEEEE
T ss_conf 7632566888887887358530028887426766798431245126887410104689999985365--77787148996
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECCC
Q ss_conf 499899999999999985446-9879999889987999996128975998223101332100-01224643189996131
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEAD 158 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~-~~l~l~~v~~lVlDEaD 158 (573)
|||||||+|++.+++.|.++. ++.+..++||.+...+.+.|.+||+|+|+|||||+||++. ..+-..+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCHHHCCCEEEEECCH
T ss_conf 56289999899999999972767734787677410589997515552788678417767655784122122035750203
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC-CCCCCCCCC--CCCCCCCCCHHCCCCCCCHHHHHH
Q ss_conf 10010012357888752143342256311112220011112101-233332333--232566520000000000024554
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAI 235 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~-~p~~i~~~~--~~~~~~~i~~~~~~v~~~~k~~~l 235 (573)
++|+|||.+||+.|++.+|+.+|++|||||+|.+|.+++.--|+ +|++|.+.. ...||..++|-|+.++...++..|
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCCCEEEECCCCCHHHHH
T ss_conf 56652518889999875235530467647896889999987633774686247899730232466407962654117999
Q ss_pred HHCCCCCCC-CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 200102356-4167751302334565555542266630104899999999998665448814998538650014578873
Q gi|254780601|r 236 VNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 (573)
Q Consensus 236 ~~ll~~~~~-~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~ 314 (573)
..+|..+.. .++||||.|...|..+++.|....++|..|||.++|+.|+.+..+|++.+.-|||||||+|||+|||+|+
T Consensus 321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~ 400 (543)
T KOG0342 321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVD 400 (543)
T ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCHHHCCCCCCCCE
T ss_conf 99999734772499993302679999999850687532442578532202389988610664399603221368888840
Q ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 389705887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 315 ~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
|||+||+|.|++.||||+|||||.|++|.+++|+.|+|...++.+. +..+++.+.|.
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~ 457 (543)
T KOG0342 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPP 457 (543)
T ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHH---HCCCCCCCCCC
T ss_conf 7998589999899898732122368986389996766778999986---28776557897
No 16
>KOG0345 consensus
Probab=100.00 E-value=0 Score=637.27 Aligned_cols=371 Identities=33% Similarity=0.512 Sum_probs=337.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 99889999999787987898999999999759969999289874689999999998610421225568827999849989
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
.|++.|+++|..+||...||||..+||.++.++||++.|.||||||+||++|+++.+.....+.++. ..-||||+||||
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~vgalIIsPTRE 90 (567)
T KOG0345 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QVGALIISPTRE 90 (567)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CEEEEEECCCHH
T ss_conf 8668999999862886368778746678852785689856788710668999999998611578965-124799657199
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHC-CCCEEEEECCCCHHHHHHCCCCCCC--CCEEEEEECCCCCC
Q ss_conf 999999999998544-6987999988998799999612-8975998223101332100012246--43189996131100
Q gi|254780601|r 86 LAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNIS--HLKAVVLDEADEML 161 (573)
Q Consensus 86 La~Qv~~~~~~l~~~-~~~~v~~~~gg~~~~~q~~~l~-~~~~iiv~TPgrl~d~~~~~~l~l~--~v~~lVlDEaD~ml 161 (573)
||.||.+++..|..+ .++++.+++||.++++.+..++ ++|+|+|||||||.|++.+..-.++ ++.+|||||||++|
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCHHHCCCCCCCCEEEECCHHHHH
T ss_conf 99999999999998503654599976864777999999709958994762499998453000361331157751467674
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCC--CCCCCCHHCCCCCCCHHHHHHHHCC
Q ss_conf 10012357888752143342256311112220011112101233332333232--5665200000000000245542001
Q gi|254780601|r 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNIL 239 (573)
Q Consensus 162 ~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~--~~~~i~~~~~~v~~~~k~~~l~~ll 239 (573)
||||..+++.|+..+|+.|.|-|||||+.+++.+|.+..|+||+.|.+..+.. ++..+..+|+.|++..|+..|.++|
T Consensus 171 dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L 250 (567)
T KOG0345 171 DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLL 250 (567)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHEEEEECHHHHHHHHHHHH
T ss_conf 43279999999986621000244300214668899985356863654123445558423111256757788899999999
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 0235641677513023345655555422--66630104899999999998665448814998538650014578873389
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi 317 (573)
.....+++|||..|...|+.....+... .++..++||.|+|.+|..++..|++..-.+|.||||||||||||+|||||
T Consensus 251 ~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv 330 (567)
T KOG0345 251 NNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV 330 (567)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCEEEE
T ss_conf 62454627999347540999998888760787479862201234688999998715686188604555368988970799
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 705887478999860301037888602564059999999999998506641056899999
Q gi|254780601|r 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377 (573)
Q Consensus 318 n~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~ee 377 (573)
+||+|.++.+|+||+|||||+|++|.||+|+.|+|..++..+.-.-+..+++...|.+..
T Consensus 331 Q~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345 331 QFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred ECCCCCCHHHHHHHCCHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHCCCCCCH
T ss_conf 707999814777741214435676634899766178889999842875244431421113
No 17
>KOG0335 consensus
Probab=100.00 E-value=0 Score=640.38 Aligned_cols=355 Identities=31% Similarity=0.490 Sum_probs=328.7
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC----CCCCCCCEEEEEC
Q ss_conf 998899999997879878989999999997599699992898746899999999986104212----2556882799984
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASAPLALAIA 81 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~----~~~~~~~~~lil~ 81 (573)
.|.+.|...++..||+.|||||+.+||.+..|+|+++.||||||||+||+||+++.+...... ......|++|||+
T Consensus 80 ~l~~~l~~n~~~~~~~~ptpvQk~sip~i~~GrdlmacAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIla 159 (482)
T KOG0335 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILA 159 (482)
T ss_pred CHHHHHHCCCCCCCCCCCCCCEECCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 13688860523356668986156042244258842788257885137888889999986486566656778897259981
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99899999999999985446987999988998799999612897599822310133210001224643189996131100
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml 161 (573)
||||||.||+++.+++.....+++..+|||.++..|.+.+++||||+|+|||||.|+++++.+.|++++||||||||+||
T Consensus 160 pTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335 160 PTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRML 239 (482)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCHHHHHHHCCEEEHHHCCEEEECCHHHHH
T ss_conf 73787667888887640221220330057844544223332575578855750564554151126238589952367766
Q ss_pred C-CHHHHHHHHHHHHCC----CCCCEEEEECCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHH
Q ss_conf 1-001235788875214----33422563111122200111121012-33332333232566520000000000024554
Q gi|254780601|r 162 D-LGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235 (573)
Q Consensus 162 ~-~gf~~~i~~i~~~~p----~~~q~~l~SAT~~~~i~~l~~~~~~~-p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l 235 (573)
| |||.++|.+|+..+. +.+|++|||||+|.++..++..|+.+ ++++.+.....+..+|.|....|...+|...|
T Consensus 240 D~mgF~p~Ir~Iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~L 319 (482)
T KOG0335 240 DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKL 319 (482)
T ss_pred HHCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEEECCHHHHHHH
T ss_conf 63266620799962558887466137887355775666447887641513888753046665634676642111357899
Q ss_pred HHCCCCCC---------CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 20010235---------641677513023345655555422666301048999999999986654488149985386500
Q gi|254780601|r 236 VNILRYHG---------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 (573)
Q Consensus 236 ~~ll~~~~---------~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaR 306 (573)
..+|.... .++++|||.|++.++.|+.+|...|+++..+||+.+|.+|.++++.|++|++.+||||+||||
T Consensus 320 ldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaR 399 (482)
T KOG0335 320 LDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAAR 399 (482)
T ss_pred HHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHC
T ss_conf 98861346786657764313899961300326999998617987456033255637999987764698667987036654
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 145788733897058874789998603010378886025640599999999999
Q gi|254780601|r 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 (573)
Q Consensus 307 GiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~ 360 (573)
||||++|+||||||+|.+..+||||||||||+|..|.|++|+........+.+.
T Consensus 400 GlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335 400 GLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf 788768743588636752466777415435577773268876474300689999
No 18
>KOG0340 consensus
Probab=100.00 E-value=0 Score=628.14 Aligned_cols=367 Identities=32% Similarity=0.466 Sum_probs=338.4
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777--9988999999978798789899999999975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
|+.|+ +|++-|.+.|..+|+..|||||..|||.||+|+|+|+.|+||||||+||.||+++++..+. .+-.||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP------~giFal 79 (442)
T KOG0340 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP------YGIFAL 79 (442)
T ss_pred CCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCEEE
T ss_conf 47644407638999999983588998267652487854663103134688741122278777613388------760699
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCC----CCCCCCCEEEEE
Q ss_conf 9849989999999999998544698799998899879999961289759982231013321000----122464318999
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK----GLNISHLKAVVL 154 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~----~l~l~~v~~lVl 154 (573)
||+||||||.|+++.|..+++.+++++..+|||+++-.|-..|.+.||+||+||||+.||++.. ..-+.+++|+|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCEEEEEE
T ss_conf 95452888888889999845645632799975688764544426698757517633354112687655255530046774
Q ss_pred ECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCHHH
Q ss_conf 6131100100123578887521433422563111122200111121012--33332333232566520000000000024
Q gi|254780601|r 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRD 232 (573)
Q Consensus 155 DEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~--p~~i~~~~~~~~~~~i~~~~~~v~~~~k~ 232 (573)
||||.||+-+|.++++.|+..+|..||++|||||+.+.+..+-..-.+. +..+.+.....+++.+.|.|+.|+...|.
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred CCHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHEEECCHHHHH
T ss_conf 13026541560567766650488764337998663657998636874555026885269987254552022205444567
Q ss_pred HHHHHCCCCC---CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 5542001023---5641677513023345655555422666301048999999999986654488149985386500145
Q gi|254780601|r 233 NAIVNILRYH---GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 (573)
Q Consensus 233 ~~l~~ll~~~---~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiD 309 (573)
.+|.++|... ....++||+||...|+.|+..|...++.+.+|||.|+|.+|..++.+||++.++|||||||||||||
T Consensus 240 aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLD 319 (442)
T KOG0340 240 AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLD 319 (442)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCEEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCC
T ss_conf 88998775222135760899960468999999999630344543110050888998998776267408997313432789
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7887338970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 310 i~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
||.|++|||||+|.++.+||||+|||+|||+.|.||+|+++.|...++.||...+.++++.+.-
T Consensus 320 IP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340 320 IPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHCCHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8844678706889987888876030120567764289862422799999999970146415564
No 19
>KOG0343 consensus
Probab=100.00 E-value=0 Score=629.78 Aligned_cols=368 Identities=32% Similarity=0.480 Sum_probs=337.1
Q ss_pred CCCCCC--CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 977799--889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~~l--~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
+.|++| +...+++|.+.+|..||.||+.+||..|+|+||++.|+|||||||||++|+|++|... ++++..+.-|||
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--kWs~~DGlGalI 146 (758)
T KOG0343 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--KWSPTDGLGALI 146 (758)
T ss_pred HHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHC--CCCCCCCCEEEE
T ss_conf 568748876678876765487569999876414220575000102358884465439999999971--778878832699
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100-01224643189996131
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEAD 158 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~-~~l~l~~v~~lVlDEaD 158 (573)
|+||||||+|+++++.+++++..+...+++||.++..+...+. +++|+|||||||+.|+.. -.++.+++++|||||||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH-CCCEEEECHHHHHHHHHHCCCCCCCCCEEEEECCHH
T ss_conf 5652999999999999875205643113665712688997662-577699661789987541678787760478732088
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCC--CCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 1001001235788875214334225631111222001111210123333233--32325665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~--~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
+||||||.+.++.|+..+|..|||+|||||....+.+|++.-++||++|.+. ....++.++.|+|+.|+-.+|+++|.
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHEEEEEEHHHHHHHHH
T ss_conf 89877678889999873772330466632551139999975347985799723533368364533279976014789999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 001023564167751302334565555542--266630104899999999998665448814998538650014578873
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~ 314 (573)
.++..+-..+.|||+.|++.|..+++.... -|++..+|||.|+|..|..+..+|-..+.-||+||||+|||||||.|+
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCCCCCC
T ss_conf 99984525436999860068999999998508998325421631377889999999875555898602554368986433
Q ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH-HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 38970588747899986030103788860256405999-999999999850664105689
Q gi|254780601|r 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-QRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 315 ~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e-~~~~~~i~~~~~~~~~~~~~P 373 (573)
|||+||||.|+++||||+|||+|.+..|.|+++++|+| ..++..|++. ++.+.+..+-
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k-~I~i~~i~i~ 444 (758)
T KOG0343 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK-KIPIKEIKID 444 (758)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHC-CCCHHHHCCC
T ss_conf 6998068205889998721221136778568997631699999999875-8887762368
No 20
>KOG0336 consensus
Probab=100.00 E-value=0 Score=629.05 Aligned_cols=358 Identities=30% Similarity=0.447 Sum_probs=331.9
Q ss_pred CCCC---CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 7779---9889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 3 IFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 3 ~f~~---l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
+|++ --++++..+++.||.+|||||.+++|.+|+|.|+|+.||||||||+||++|-+-+++....+.....+|.+|+
T Consensus 220 tFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lv 299 (629)
T KOG0336 220 TFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLV 299 (629)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEECCCCEEEEEECCCCCCHHHHCCCEEEEECCCHHHHCCCCCCEEE
T ss_conf 47878756599999999606888985320233201137644778744898477875054014514611120368985499
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
|+||||||+||.-+..+++ +.+.+..|+|||.+-..|+..|++|++|+|+|||||.|+...+.++|.++.||||||||+
T Consensus 300 l~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADr 378 (629)
T KOG0336 300 LTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADR 378 (629)
T ss_pred EECCHHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEEEEEEECCHHH
T ss_conf 8333888998876776764-358432887548785468998745741776078517655531720011258898612666
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHCCCCCCCHHHHHHHHC
Q ss_conf 001001235788875214334225631111222001111210123333233323256-6520000000000024554200
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNI 238 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~-~~i~~~~~~v~~~~k~~~l~~l 238 (573)
||||||...|..||-.+..+|||+|.|||||..|.+|+..||++|+.+.+.+-..+. ..++|.++.....+|++.+..+
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f 458 (629)
T KOG0336 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFF 458 (629)
T ss_pred HHCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCEEEEEEEEEEEEECCCHHHHHHHHHH
T ss_conf 64456628889886522776225531055866899999986408549996143435541010258843618999999999
Q ss_pred CC-CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 10-23564167751302334565555542266630104899999999998665448814998538650014578873389
Q gi|254780601|r 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 (573)
Q Consensus 239 l~-~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi 317 (573)
+. .....++||||..|..++.|+.-|.-.|+++..|||+-+|.+|+.+++.|++|.++||||||+|+||||+++|+||+
T Consensus 459 ~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~ 538 (629)
T KOG0336 459 VANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY 538 (629)
T ss_pred HHHCCCCCEEEEEEECHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCHHCCEEE
T ss_conf 98558886189998310322102310211461011025872243599999764158169999722343378820020354
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 70588747899986030103788860256405999999999999
Q gi|254780601|r 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 318 n~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~ 361 (573)
|||+|.++|.||||+|||||||++|++|+|++.+|+..+..+.+
T Consensus 539 NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336 539 NYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 05787559999987123565777763278886304777999999
No 21
>KOG0347 consensus
Probab=100.00 E-value=0 Score=621.09 Aligned_cols=374 Identities=32% Similarity=0.473 Sum_probs=331.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCCCE--E
Q ss_conf 99889999999787987898999999999759-9699992898746899999999986104212-----25568827--9
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDR-----FSPASAPL--A 77 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~-----~~~~~~~~--~ 77 (573)
.||.++++||..+||..|||||+.+||.++.| .||+|.|.|||||||||+|||+++++....- ......|+ +
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHCCCHHHCCCHHCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCEE
T ss_conf 98999999998647899861044116676546300003334688742441232545433036537654467760576403
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCC---CCCCCEEEEE
Q ss_conf 9984998999999999999854469879999889987999996128975998223101332100012---2464318999
Q gi|254780601|r 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL---NISHLKAVVL 154 (573)
Q Consensus 78 lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l---~l~~v~~lVl 154 (573)
||++||||||.||.+.+..++.+.++++++++||.+..+|.+.|++.|||||+|||||+.+++.++. ++..|++|||
T Consensus 267 LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVl 346 (731)
T KOG0347 267 LVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVL 346 (731)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_conf 89637099999999999986134672788752305799999998529987993662899999751066642332407887
Q ss_pred ECCCCCCCCHHHHHHHHHHHHCC-----CCCCEEEEECCCCCC---------------------CHHHHHH--HCCCCCC
Q ss_conf 61311001001235788875214-----334225631111222---------------------0011112--1012333
Q gi|254780601|r 155 DEADEMLDLGFRDDIEFILDSSP-----KKRRMLMFSATISPA---------------------ITTLAKN--YQKDAVR 206 (573)
Q Consensus 155 DEaD~ml~~gf~~~i~~i~~~~p-----~~~q~~l~SAT~~~~---------------------i~~l~~~--~~~~p~~ 206 (573)
||||+|+.-|+++++..||+.+. ..+||+.||||+.-. |..|.+. |-.+|..
T Consensus 347 DEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpki 426 (731)
T KOG0347 347 DEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKI 426 (731)
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 34777755110999999999860311051012589987763332170577654221145566799999998475689826
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 32333232566520000000000024554200102356416775130233456555554226663010489999999999
Q gi|254780601|r 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286 (573)
Q Consensus 207 i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~ 286 (573)
|++.+...++..+....+.|+..+|...|+.+|-.+ |.++|||||+...+..|+-.|...++....||..|.|.+|.+.
T Consensus 427 iD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347 427 IDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKN 505 (731)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-CCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 766820447888887763588544540689988636-9835998411889999999974169997102577889999876
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCC
Q ss_conf 86654488149985386500145788733897058874789998603010378886025640599999999999985066
Q gi|254780601|r 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366 (573)
Q Consensus 287 ~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~ 366 (573)
+++|++....|||||||||||||||+|+|||||.+|...|-||||+|||+||+..|.++.|+.|.|...++.|.+..+..
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred HHHHHCCCCEEEEEEHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 99874488817996234442588878636789606875324676266532256788379986817757899999987323
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 41056899999888
Q gi|254780601|r 367 VVWEPAPSVEAIRE 380 (573)
Q Consensus 367 ~~~~~~Ps~eeI~~ 380 (573)
....-.|-.+.+..
T Consensus 586 ~dlpifPv~~~~m~ 599 (731)
T KOG0347 586 EDLPIFPVETDIMD 599 (731)
T ss_pred CCCCCEECCHHHHH
T ss_conf 67773002178999
No 22
>KOG0334 consensus
Probab=100.00 E-value=0 Score=613.93 Aligned_cols=369 Identities=30% Similarity=0.494 Sum_probs=338.9
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 9777--99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
+.|. +|+..|+..|+++||..|||||.+|||.|+.|+|||++|.||||||+||+||++-++.... ......+|.+||
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr-~~~~gdGPi~li 443 (997)
T KOG0334 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLEEGDGPIALI 443 (997)
T ss_pred CHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-CHHCCCCCEEEE
T ss_conf 4387678618899999970689987556643012225774587732688620344211555420479-711078864799
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCC---CCCCCCEEEEEEC
Q ss_conf 8499899999999999985446987999988998799999612897599822310133210001---2246431899961
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDE 156 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~---l~l~~v~~lVlDE 156 (573)
++||||||+||++++++|++.++++++++|||..+..|+..|++|+.|+||||||.+|++-... .+|..+.|+|+||
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEECH
T ss_conf 73777899999999999877417627984278518878999867896599645032336661577623310110355411
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCC-CCHHHHHH
Q ss_conf 31100100123578887521433422563111122200111121012333323332325665200000000-00024554
Q gi|254780601|r 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAI 235 (573)
Q Consensus 157 aD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~-~~~k~~~l 235 (573)
||+|++|||.+.+..|++.++..+||++||||+|..+..++.+.|+.|+.|.+.........|+|.+..|+ ..+|+.-|
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred HHHHHHCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCEEEEEEEECCCHHHHHHH
T ss_conf 23544004575404097646603543456622069999999886158808997463057424048999814836779999
Q ss_pred HHCC-CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 2001-023564167751302334565555542266630104899999999998665448814998538650014578873
Q gi|254780601|r 236 VNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314 (573)
Q Consensus 236 ~~ll-~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~ 314 (573)
..|| +..+..++||||.....|+.+...|++.||.|..|||+.+|.+|..+++.||++.+++||||||+|||||+.++.
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~ 683 (997)
T KOG0334 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELI 683 (997)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCEE
T ss_conf 99999886248879998471478899999985686054305787567788589997456742898514542676665405
Q ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 38970588747899986030103788860256405999999999999850664105689
Q gi|254780601|r 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 315 ~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
+|||||+|...+.|+||+|||||+|++|.|++|++|.+..+.-.|.+.. .+...+.|
T Consensus 684 Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334 684 LVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH--HHCCCCCC
T ss_conf 8997366312799999851356677763379985778864378899999--86158995
No 23
>KOG0327 consensus
Probab=100.00 E-value=0 Score=611.20 Aligned_cols=362 Identities=33% Similarity=0.550 Sum_probs=346.8
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
+|+ ||++.|++++...||++|+.||++||+|++.|.|++++||+|||||+||++++++.++.... ..||||+
T Consensus 27 sfddm~L~e~LLrgiy~~GFekPSaIQqrAI~p~i~G~dv~~qaqsgTgKt~af~i~ilq~iD~~~k------e~qalil 100 (397)
T KOG0327 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK------ETQALIL 100 (397)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHH------HHHHHHH
T ss_conf 0653388799986787603688227776343553468744676302544114667888751374167------7779886
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 499899999999999985446987999988998799999612-8975998223101332100012246431899961311
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
+||||||.|+.+....++...+.++..++||.++..+..+++ .++||+||||||+.|+++++.+....++++|+||||+
T Consensus 101 aPtreLa~q~~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCEEECCCCHHHHHHHCCCCCCCCCEEEEEECCHHH
T ss_conf 13278889899998864112461466531764100345555204763543785057776413645666546775243676
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCC
Q ss_conf 00100123578887521433422563111122200111121012333323332325665200000000000245542001
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll 239 (573)
||..||.|.|+.|+.++|.+.|.+|||||||.++..++++||++|+.|.+..+..|...|+|+|+.+....|+..|+.+.
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~ 260 (397)
T KOG0327 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLY 260 (397)
T ss_pred HHCCCHHHHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHEEEEEEECCCCCCCCHHHHHH
T ss_conf 63056489999999875943220100136858899998874047568995200201222002220105431122799999
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 02356416775130233456555554226663010489999999999866544881499853865001457887338970
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~ 319 (573)
+ .-.+++|||||++.+..++++|..+|+.++++||+|.|.+|+.++..|++|..+|||+||++||||||.+++.||||
T Consensus 261 ~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~i~~d~~q~~R~~~~~~f~~g~srvlIttdl~argidv~~~slviny 338 (397)
T KOG0327 261 R--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred H--HHHCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCEEEEE
T ss_conf 8--64310578510456777899986277337876346430034689998645872377412212465411101225650
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58874789998603010378886025640599999999999985066410568
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~ 372 (573)
|+|.+.++|+||+||+||.|++|.+|.+++.++.+.++.|+++++..+++.|.
T Consensus 339 dlP~r~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327 339 DLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 16520666665255456567771355520175688887389863872044354
No 24
>KOG0326 consensus
Probab=100.00 E-value=0 Score=612.16 Aligned_cols=363 Identities=26% Similarity=0.444 Sum_probs=347.6
Q ss_pred CCCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 97779--9889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
+.||+ |..+|+..+.+.||+.|+|||+++||..|.|+|+++.|+.|||||.||+||+|+++++.... .|++|
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~------IQ~~i 158 (459)
T KOG0326 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNV------IQAII 158 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECHHHHHCCCCCCC------EEEEE
T ss_conf 517764113999999997036799975302354442351355550189887330441256652822100------44799
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
|+||||||+|+...+..++++.++++....||+++.+.+-.|.+++|++||||||++|+++++.-.++++.++|+||||+
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCEEEEECCCHHHHHHHHCCCCCCHHCEEEEECHHHH
T ss_conf 96163266788799999860468499994388654432056158269997287178888862652200114787410554
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCC
Q ss_conf 00100123578887521433422563111122200111121012333323332325665200000000000245542001
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll 239 (573)
||+.-|.+-++.++..+|+++|.+|||||+|--|..+..+||++|-.|.+- ++.+...|+|+|-.|.++.|...|..|+
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred HHCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEHH-HHHHHCCHHHHEEEECHHHHHHHHHHHH
T ss_conf 414145678999987578542046763136405888999860586022046-5632035232101102355556499898
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 02356416775130233456555554226663010489999999999866544881499853865001457887338970
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~ 319 (573)
......++|||||+-..||.++.+..+.||+|..+|+.|.|+.|++++.+||+|.++.|||||+..||||++.|..||||
T Consensus 318 skLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINF 397 (459)
T KOG0326 318 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINF 397 (459)
T ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCEEEEEEEC
T ss_conf 87500445999636317679898888616436677888877654245565432532012420233046554102599963
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 5887478999860301037888602564059999999999998506641056
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~ 371 (573)
|+|.+.|+|+||+||.||+|.-|.||.|++.+|+..+..||+..+.+|...|
T Consensus 398 Dfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326 398 DFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7887778999871677657876247998750324438899998466554688
No 25
>KOG0339 consensus
Probab=100.00 E-value=0 Score=600.79 Aligned_cols=359 Identities=31% Similarity=0.495 Sum_probs=336.9
Q ss_pred CCCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 97779--9889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
|.|+. ..+.|..++.+..|++|||||.+++|..|.|+|||+.|.||||||+||+.|++.++..+.+ ..+..+|.+||
T Consensus 223 tsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-L~~g~gPi~vi 301 (731)
T KOG0339 223 TSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPGEGPIGVI 301 (731)
T ss_pred CHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHCCHHH-HCCCCCCEEEE
T ss_conf 41654174399999986420046775233435522466521111211575056777777777414052-06899976999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
+|||||||.||+.++++|++..+++++++|||.+..+|.+.|+.||.|||||||||+||++-+.+++.++.||||||||+
T Consensus 302 lvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr 381 (731)
T KOG0339 302 LVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR 381 (731)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEECHHH
T ss_conf 80638999999999998631126427886368748887776502772899662888999886033310035788711111
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCH-HHHH-HHH
Q ss_conf 00100123578887521433422563111122200111121012333323332325665200000000000-2455-420
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNA-IVN 237 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~-k~~~-l~~ 237 (573)
|++|||...|..|..++..+|||+|||||++..|.+|+..+|.+|+.|........+..|+|.+..|+..+ |+.- +++
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~ 461 (731)
T KOG0339 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRH 461 (731)
T ss_pred HHCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHCCCCCHHHEEEECCCCHHHHHHHHHH
T ss_conf 31265479899998644886427986031068899999997359726787401025665242465236817888999997
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 01023564167751302334565555542266630104899999999998665448814998538650014578873389
Q gi|254780601|r 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 (573)
Q Consensus 238 ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi 317 (573)
|.+...-.++|||+-.+..+++++..|.-.||++..|||||.|.+|..++.+|+.+...|||+|||||||+||+++..||
T Consensus 462 L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv 541 (731)
T KOG0339 462 LVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV 541 (731)
T ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCEEE
T ss_conf 55013678479999422789999987320563256522745667777799987624775488840765178752201023
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 70588747899986030103788860256405999999999999
Q gi|254780601|r 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 318 n~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~ 361 (573)
|||+-.|+++|+||+|||||||.+|++++|++++|....-.+-+
T Consensus 542 nyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339 542 NYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 43222106778877510233555651368733556777668998
No 26
>KOG0348 consensus
Probab=100.00 E-value=0 Score=597.59 Aligned_cols=368 Identities=33% Similarity=0.485 Sum_probs=317.6
Q ss_pred CCC--CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 777--99889999999-787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 3 IFE--NIPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
.|. +|++.|...|+ .|+|..||.||+++||.+|+|+|+++.||||||||+||+||+++.|.....+.....+|.|||
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred CCHHCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 30113777799999988745576406765020355258634788577886217999999999972686555568834899
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHH-CCCCCCCCCEEEEEECC
Q ss_conf 84998999999999999854469879-99988998799999612897599822310133210-00122464318999613
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEA 157 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v-~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~-~~~l~l~~v~~lVlDEa 157 (573)
|+||||||+|+|+.+.+|.+....-| ..+.||..-..+...|++|++|+|||||||+|||. ...+++++++|+|+|||
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa 296 (708)
T KOG0348 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA 296 (708)
T ss_pred EECHHHHHHHHHHHHHHHHCCCEEEEECEEECCCCCCCHHHHHHCCCEEEECCCHHHHHHHHCCCHHEEEEEEEEEECCH
T ss_conf 80419999999999998725743773021223633101788875485489758427889874300221003568985343
Q ss_pred CCCCCCHHHHHHHHHHHHC-------------CCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC-----------
Q ss_conf 1100100123578887521-------------4334225631111222001111210123333233323-----------
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSS-------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----------- 213 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~-------------p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~----------- 213 (573)
|++|+|||.+||..|++.+ |..+|.+|+||||...|.+|++.-|+||+.|......
T Consensus 297 DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ 376 (708)
T KOG0348 297 DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQ 376 (708)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCHHHHH
T ss_conf 67876243003999999875002001025566378776766655677788876331568556404301220386314566
Q ss_pred --------------CCCCCCCHHCCCCCCCHHHHHHHHCC----CCCCCCEEEEECCCHHHHHHHHHHHHHC--------
Q ss_conf --------------25665200000000000245542001----0235641677513023345655555422--------
Q gi|254780601|r 214 --------------RQHSDIDYRAVLVALSDRDNAIVNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEH-------- 267 (573)
Q Consensus 214 --------------~~~~~i~~~~~~v~~~~k~~~l~~ll----~~~~~~~~ivF~~t~~~~~~l~~~L~~~-------- 267 (573)
..+.++.|+|..|++.-++-+|..+| +.+...++|||+.|.+.|+.-++.+...
T Consensus 377 ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~ 456 (708)
T KOG0348 377 EVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGS 456 (708)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 33775345632012386876500685287410899999999986544423069999632578999999986540232366
Q ss_pred -------C-------CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf -------6-------66301048999999999986654488149985386500145788733897058874789998603
Q gi|254780601|r 268 -------L-------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 (573)
Q Consensus 268 -------g-------~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~G 333 (573)
| .+..-|||.|+|++|..+++.|+...-.||.||||||||||+|+|++||+||+|.++++|+||+|
T Consensus 457 s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvG 536 (708)
T KOG0348 457 SGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVG 536 (708)
T ss_pred CCCCCCCCCHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 67866679810331463788427434889999987530354427885034542688877676998279998899999840
Q ss_pred CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 01037888602564059999999999998506641056
Q gi|254780601|r 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371 (573)
Q Consensus 334 RtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~ 371 (573)
||+|+|.+|.|++|+.|.|..++..+.++... +.+.+
T Consensus 537 RTARaG~kG~alLfL~P~Eaey~~~l~~~~~~-l~q~~ 573 (708)
T KOG0348 537 RTARAGEKGEALLFLLPSEAEYVNYLKKHHIM-LLQFD 573 (708)
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHCCH-HHCCC
T ss_conf 45434677715788665179999988750223-43263
No 27
>KOG0341 consensus
Probab=100.00 E-value=0 Score=602.93 Aligned_cols=361 Identities=32% Similarity=0.487 Sum_probs=327.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCEEEEECCCH
Q ss_conf 9889999999787987898999999999759969999289874689999999998610421225--56882799984998
Q gi|254780601|r 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--PASAPLALAIAPTR 84 (573)
Q Consensus 7 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~--~~~~~~~lil~PTr 84 (573)
.|..|++.|++.|+..|||||.+-||.+|.|+|+|+.|-||||||+.|.||++.-.+.+....+ ...+|..||+||+|
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSR 256 (610)
T KOG0341 177 FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSR 256 (610)
T ss_pred CCHHHHHHHHHCCCCCCCCEEECCCCEEEECCCEEEEEEECCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCCH
T ss_conf 97899999986588899863333751475157526678606884688709999999988851860037897358973708
Q ss_pred HHHHHHHHHHHHHHHH------CCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 9999999999998544------6987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 85 ELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~------~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
|||.|+++.+..+... ..++...|+||.++..|...+++|+||||+|||||.|++.++.++|+-++||+|||||
T Consensus 257 ELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD 336 (610)
T KOG0341 257 ELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD 336 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999999998764884665665216853898999986370699817626899998764048887776531477
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHC
Q ss_conf 10010012357888752143342256311112220011112101233332333232566520000000000024554200
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~l 238 (573)
+|+||||.+||..|+......|||+|||||||..|..+++.-+-.|++|.+.......-++-|.+-+|....|+-.|...
T Consensus 337 RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeC 416 (610)
T KOG0341 337 RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLEC 416 (610)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77605632668999999742022355312464889988876405645884255542202088999999863012069987
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 10235641677513023345655555422666301048999999999986654488149985386500145788733897
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
|.... ..++|||..|.+|+.+.++|--.|+.+.++||+-.|++|..+++.||.|+-+|||||||||.|||||+|.||||
T Consensus 417 LQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN 495 (610)
T KOG0341 417 LQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN 495 (610)
T ss_pred HCCCC-CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCHHHCC
T ss_conf 61279-96699841456747899999872513687416865667888999986578745887310003689745044404
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH----HHHHHHHHHHHHCCCC
Q ss_conf 0588747899986030103788860256405999----9999999998506641
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM----QRRAERLFREANVSVV 368 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e----~~~~~~i~~~~~~~~~ 368 (573)
||+|.++|.||||||||||.|++|.|.+|++++. .-.++++...++.+++
T Consensus 496 yDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP 549 (610)
T KOG0341 496 YDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVP 549 (610)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 788088999999712467788864022211456318889879999998651088
No 28
>KOG0346 consensus
Probab=100.00 E-value=0 Score=585.40 Aligned_cols=359 Identities=25% Similarity=0.367 Sum_probs=325.1
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
+|+ +|.+.|++|+.++||+.||-||+.+||.+|+|+|+++.|.||||||+||+||++|.|+....-.....+|.|+||
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iL 99 (569)
T KOG0346 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVIL 99 (569)
T ss_pred CHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 29871888899999997176776234432212432486314652268871378899999999976403643246306999
Q ss_pred CCCHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCC-CCCCCCEEEEEECC
Q ss_conf 49989999999999998544--6987999988998799999612897599822310133210001-22464318999613
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEA 157 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~--~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~-l~l~~v~~lVlDEa 157 (573)
+||||||.|||+++.+|..+ ..++++-+...++-..+...|...|||||+||+++++|+..+. ..++.+++||+|||
T Consensus 100 vPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEA 179 (569)
T KOG0346 100 VPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEA 179 (569)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCHHHHHEEEEEECHH
T ss_conf 25099999999999999998787655542103311677788870599758717188999986063021201025785035
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-CCCCHHCCCCCCCHHHHHHH
Q ss_conf 11001001235788875214334225631111222001111210123333233323256-65200000000000245542
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~-~~i~~~~~~v~~~~k~~~l~ 236 (573)
|-||..||.+|+..|.+++|...|++|+|||+..+|..|-+.||+||+.+.+...+..+ .++.|+++.|++.||+..++
T Consensus 180 DLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfllly 259 (569)
T KOG0346 180 DLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLY 259 (569)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf 66642360888999987488256502003135567999999751697689832666898452258999703530688999
Q ss_pred HCCCCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC------------
Q ss_conf 001023-5641677513023345655555422666301048999999999986654488149985386------------
Q gi|254780601|r 237 NILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV------------ 303 (573)
Q Consensus 237 ~ll~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv------------ 303 (573)
.++... -..+.|||+||...|-.|.-+|...|+++..|+|+|+++.|..++++|..|-++++||||.
T Consensus 260 allKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346 260 ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred HHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCC
T ss_conf 99999886275499985002468899999980737665256466432122898860761159997067641355521112
Q ss_pred -----------------------CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf -----------------------500145788733897058874789998603010378886025640599999999999
Q gi|254780601|r 304 -----------------------AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 (573)
Q Consensus 304 -----------------------aaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~ 360 (573)
+||||||..|..|||||+|.++.+||||+|||||+|++|++++|+.|.|..-...|+
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le 419 (569)
T KOG0346 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLE 419 (569)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHCHHCCCCCHHEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 54445688774212444570112121654012114561378985478888612223478987259996646776066799
Q ss_pred H
Q ss_conf 9
Q gi|254780601|r 361 R 361 (573)
Q Consensus 361 ~ 361 (573)
.
T Consensus 420 ~ 420 (569)
T KOG0346 420 S 420 (569)
T ss_pred H
T ss_conf 9
No 29
>KOG0332 consensus
Probab=100.00 E-value=0 Score=555.37 Aligned_cols=364 Identities=30% Similarity=0.485 Sum_probs=333.8
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9777--99889999999787987898999999999759--9699992898746899999999986104212255688279
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g--~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~ 77 (573)
+.|+ +|.++|+++|..|+|.+|+.||+.++|.+|.. +++|+|||.|||||+||.|.+|.++++.. ..||+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsRvd~~~------~~PQ~ 163 (477)
T KOG0332 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV------VVPQC 163 (477)
T ss_pred CCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCC------CCCCC
T ss_conf 258761779899857887526883257775212530598265665501788605899999987348333------58774
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC----CEEEEECCCCHHHHHHC-CCCCCCCCEEE
Q ss_conf 99849989999999999998544698799998899879999961289----75998223101332100-01224643189
Q gi|254780601|r 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG----AHIVVGTPGRLCDHIRG-KGLNISHLKAV 152 (573)
Q Consensus 78 lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~----~~iiv~TPgrl~d~~~~-~~l~l~~v~~l 152 (573)
+.|+||||||.|+-+++...+++.++++..++-|. +.++| .||+|||||-++|++.+ +-+.++.++++
T Consensus 164 iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~s-------k~~rG~~l~eqIviGTPGtv~Dl~~klk~id~~kikvf 236 (477)
T KOG0332 164 ICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGS-------KAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred EEECCHHHHHHHHHHHHHHHCCCEEEEEEEEECCC-------CCCCCCCCHHHEEECCCCCHHHHHHHHHHHCHHHCEEE
T ss_conf 05476177799898999984670114689985376-------44467733222131799428999999874276664388
Q ss_pred EEECCCCCCC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC-CH
Q ss_conf 9961311001-001235788875214334225631111222001111210123333233323256652000000000-00
Q gi|254780601|r 153 VLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SD 230 (573)
Q Consensus 153 VlDEaD~ml~-~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~-~~ 230 (573)
|+||||.|++ .||.|+--.|+..+|.+.|.+|||||+...+..++.++.+||..+.+.++..+.++|+|+|+.|.. .+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EECCHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCHHHHEEECCCHHH
T ss_conf 85322555431366554310443168762377640103779999999854898403656343064213431366555166
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 24554200102356416775130233456555554226663010489999999999866544881499853865001457
Q gi|254780601|r 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 (573)
Q Consensus 231 k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi 310 (573)
|+++|++|.......++||||.||..+.+|+..|...|+.+..|||+|.-.+|..++++||.|..+|||+|+|.|||||+
T Consensus 317 K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332 317 KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCC
T ss_conf 79999998701111005899962026999999998437536785065306788999999865760699870111235653
Q ss_pred CCCCEEEEECCC------CCHHHHHHHHCCCCCCCCCCEEEEEECH-HHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 887338970588------7478999860301037888602564059-9999999999985066410568999998
Q gi|254780601|r 311 PDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFREANVSVVWEPAPSVEAI 378 (573)
Q Consensus 311 ~~v~~Vin~d~P------~~~~~yvHR~GRtgRag~~G~ai~l~~~-~e~~~~~~i~~~~~~~~~~~~~Ps~eeI 378 (573)
+.|+.|||||+| .|.|+|+||||||||+|++|.||.|+.. +.+..+..|+++.+.++.....-+.+++
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred CEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEECCCCCHHHH
T ss_conf 137999944776455789877889887023465665524898641657589999999998525221487668999
No 30
>KOG4284 consensus
Probab=100.00 E-value=0 Score=550.25 Aligned_cols=365 Identities=28% Similarity=0.442 Sum_probs=328.5
Q ss_pred CCCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 97779--9889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
..||. |..+++..|...||..||+||.+|||.++.+-|+|+||+.|||||+-|.+-+++.++... ..||++|
T Consensus 25 ~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~------~~~q~~I 98 (980)
T KOG4284 25 PGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS------SHIQKVI 98 (980)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHCCCCC------CCCEEEE
T ss_conf 9889988889999988751345787013432114431553589813788855899854302227566------7620699
Q ss_pred ECCCHHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 84998999999999999854-46987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~-~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
++||||+|.||.+.+.+++. +.|+++...+||++....+..|++ ++|+|||||||..+++-+.++.++|++|||||||
T Consensus 99 v~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD 177 (980)
T KOG4284 99 VTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD 177 (980)
T ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHH-CEEEECCCHHHHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 714356645799999986524457605899668543555666540-2378438358899987067771102688843177
Q ss_pred CCCC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC--------
Q ss_conf 1001-0012357888752143342256311112220011112101233332333232566520000000000--------
Q gi|254780601|r 159 EMLD-LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-------- 229 (573)
Q Consensus 159 ~ml~-~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~-------- 229 (573)
+|++ -.|+++|..|+..+|..||.+.||||+|..+.++..+||++|..|.........-.|+|+|+.+...
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemr 257 (980)
T KOG4284 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMR 257 (980)
T ss_pred HHHCHHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCEEECHHHEEEECCCCCCHHHHHH
T ss_conf 66320247888999997450000256773357356899999870462224326677425301020352268863589999
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 02455420010235641677513023345655555422666301048999999999986654488149985386500145
Q gi|254780601|r 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 (573)
Q Consensus 230 ~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiD 309 (573)
.|+..|.+++....+.++||||+....|+.++..|...|+.|..++|.|+|++|..+++++|+-.++|||+||+.|||||
T Consensus 258 lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284 258 LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEECCHHHCCCC
T ss_conf 99999999986072677776541342104788775116987177414112357889998742016899985231222678
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHH-HHHHH----HHHHHHHHCCCCC-CCCC
Q ss_conf 788733897058874789998603010378886025640599-99999----9999985066410-5689
Q gi|254780601|r 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRA----ERLFREANVSVVW-EPAP 373 (573)
Q Consensus 310 i~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~-e~~~~----~~i~~~~~~~~~~-~~~P 373 (573)
-++|.+|||.|.|.|-++|.|||||+||+|..|.+|+|+... |...+ ..|...++..... .|+|
T Consensus 338 a~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~p~~p~P 407 (980)
T KOG4284 338 ADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVEPVHPLP 407 (980)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCC
T ss_conf 6555369835877306789988400001455650688860604430369999987653011103677898
No 31
>KOG0337 consensus
Probab=100.00 E-value=0 Score=545.92 Aligned_cols=365 Identities=28% Similarity=0.388 Sum_probs=344.2
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
.|+ +|+..+++|+++.||..|||||+++||.+|+|+|+++.|.||||||+||+||+++++.... ..+.++||+
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ralil 96 (529)
T KOG0337 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALIL 96 (529)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCC-----CCCCCEEEC
T ss_conf 843258788999999986238998411034420031452100552278610467889999986136-----446202432
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 49989999999999998544698799998899879999961289759982231013321000122464318999613110
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
+||||||+|+.+.++.++++.+++.+++|||.++++|...|..+||||++||||++.+.-.-.|.|+.|.|+|.||||.+
T Consensus 97 sptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrl 176 (529)
T KOG0337 97 SPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEHHEECCCCCEEEEEEHHHHHH
T ss_conf 67088999999999985154211210112632488999984159987982485134200210012132256641013478
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCC
Q ss_conf 01001235788875214334225631111222001111210123333233323256652000000000002455420010
Q gi|254780601|r 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 (573)
Q Consensus 161 l~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~ 240 (573)
++|||.+.+..|+..+|..+||++||||+|..+..+++.-+.+|+.|.+.-++...++.+..++.|...+|..+|..++.
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~ 256 (529)
T KOG0337 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILG 256 (529)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEEEHHHHCCHHHHHHEEEECCHHHHHHHHHHHH
T ss_conf 76536899999987577763079985237644677887068887168740142105454514223061788999999985
Q ss_pred -CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf -2356416775130233456555554226663010489999999999866544881499853865001457887338970
Q gi|254780601|r 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 (573)
Q Consensus 241 -~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~ 319 (573)
...+++++|||.|+..|+.+...|...|+.+..+.|.|.|..|..-+.+|+.++..+||.|||||||+|||..+.||||
T Consensus 257 ~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337 257 GRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCC
T ss_conf 12566650698315304789887898639874411144586766504203467755259984233335887654465645
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58874789998603010378886025640599999999999985066410568
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~ 372 (573)
|+|.+...|+||+||++|||++|.+++||.+.|..++-.+.-..+..+.....
T Consensus 337 d~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~ 389 (529)
T KOG0337 337 DFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAIS 389 (529)
T ss_pred CCCCCCCEEEEEECCHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCC
T ss_conf 67998755888712222145662379997225545553134404886132045
No 32
>KOG0350 consensus
Probab=100.00 E-value=0 Score=517.20 Aligned_cols=355 Identities=30% Similarity=0.454 Sum_probs=310.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 988999999978798789899999999975---------99699992898746899999999986104212255688279
Q gi|254780601|r 7 IPQVIGEALSERGYVNLTSVQEAILNPDLR---------EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 (573)
Q Consensus 7 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~---------g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~ 77 (573)
|...+.++|.+++++...|||.+++|.+|. ++|+++.|+||||||+||.|||+|.+-.. +....+|
T Consensus 144 lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-----~v~~LRa 218 (620)
T KOG0350 144 LEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-----PVKRLRA 218 (620)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCC-----CCCCEEE
T ss_conf 99999999887501454505888888999861479998877547755789884566513789997038-----7340579
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCC-C----CEEEEECCCCHHHHHH-CCCCCCCCCEE
Q ss_conf 9984998999999999999854469879999889987999996128-9----7599822310133210-00122464318
Q gi|254780601|r 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-G----AHIVVGTPGRLCDHIR-GKGLNISHLKA 151 (573)
Q Consensus 78 lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~-~----~~iiv~TPgrl~d~~~-~~~l~l~~v~~ 151 (573)
||++||||||.||+++|..+....|+.|+.+.|-.++.++.+.|.+ . +||+|+|||||.|||+ -+.++|++++|
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350 219 VVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred EEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHHHCCCCCCCCHHHCEE
T ss_conf 99954799999999999985668865988601454057899997259976543669737268888604898756445357
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCC----------------------------------CCCCEEEEECCCCCCCHHHH
Q ss_conf 99961311001001235788875214----------------------------------33422563111122200111
Q gi|254780601|r 152 VVLDEADEMLDLGFRDDIEFILDSSP----------------------------------KKRRMLMFSATISPAITTLA 197 (573)
Q Consensus 152 lVlDEaD~ml~~gf~~~i~~i~~~~p----------------------------------~~~q~~l~SAT~~~~i~~l~ 197 (573)
+|+||||+||+..|++++..++..+. ...+.++||||+...-.+|.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHCCHHHHCCHHHHH
T ss_conf 77525778999999988999999837740104715444101467740058777412776752676530133304968876
Q ss_pred HHHCCCCCCCCCC----CCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH----HCCC
Q ss_conf 1210123333233----3232566520000000000024554200102356416775130233456555554----2266
Q gi|254780601|r 198 KNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA----EHLF 269 (573)
Q Consensus 198 ~~~~~~p~~i~~~----~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~----~~g~ 269 (573)
.--++.|....+. ..-...+.+.|+++.+....|..++..++...+..++|+|+|+...+..++..|. ...+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred HHHCCCCCEEEEECCCCEEEECCHHHHHCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf 53327983588622543266157554213342023554376999997740104899952468899999999998626440
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 63010489999999999866544881499853865001457887338970588747899986030103788860256405
Q gi|254780601|r 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 (573)
Q Consensus 270 ~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~ 349 (573)
++..+.|.+++..|...+++|..|.+++|||+|++||||||.+|+.|||||+|.+..+||||+|||||||+.|.||+++.
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf 25565234438899999998753895299852365547760246047635898126578776022100567744789631
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999985066
Q gi|254780601|r 350 QNMQRRAERLFREANVS 366 (573)
Q Consensus 350 ~~e~~~~~~i~~~~~~~ 366 (573)
..+.+.+..+.+..+..
T Consensus 539 ~~~~r~F~klL~~~~~~ 555 (620)
T KOG0350 539 KHEKRLFSKLLKKTNLW 555 (620)
T ss_pred CCCCHHHHHHHHHHCCC
T ss_conf 55403799999874356
No 33
>KOG0344 consensus
Probab=100.00 E-value=0 Score=496.11 Aligned_cols=358 Identities=27% Similarity=0.347 Sum_probs=312.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 98899999997879878989999999997599699992898746899999999986104212255688279998499899
Q gi|254780601|r 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86 (573)
Q Consensus 7 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL 86 (573)
.++.|++.+...||..|||||.+|||.++.++|++++|+||||||+||++|++++|..... .....+-+++|+.|||||
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344 143 MNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTREL 221 (593)
T ss_pred HCHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCHHHH
T ss_conf 1489997676278888773100115666413305886357886205655699999987520-357654278884444999
Q ss_pred HHHHHHHHHHHH--HHCCCEEEEEECC-CCHHHHHHHHCCCCEEEEECCCCHHHHHHCCC--CCCCCCEEEEEECCCCCC
Q ss_conf 999999999985--4469879999889-98799999612897599822310133210001--224643189996131100
Q gi|254780601|r 87 AVQVGRELEWLY--AKTGVVVAVCIGG-VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG--LNISHLKAVVLDEADEML 161 (573)
Q Consensus 87 a~Qv~~~~~~l~--~~~~~~v~~~~gg-~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~--l~l~~v~~lVlDEaD~ml 161 (573)
|.|++.++..|. ...+++++..-.- .+..++....+...+|+|+||-||+.++..+. ++|++|.|+|+||||.++
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHEEEEEEECHHHHHH
T ss_conf 99999999855777787534551666653110332467778878861879999985589753201203567664687650
Q ss_pred CC-HHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC-CHHHHHHHHC
Q ss_conf 10-01235788875214-334225631111222001111210123333233323256652000000000-0024554200
Q gi|254780601|r 162 DL-GFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238 (573)
Q Consensus 162 ~~-gf~~~i~~i~~~~p-~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~-~~k~~~l~~l 238 (573)
+- +|.+.+..|++.+- ++-...+||||++..|++.++..+.+++.|.+...+.....|.|..+.|.. ..|+.++..+
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHEEEECCHHHHHHHHHH
T ss_conf 81569999999999852852225663214607799999986505336898425257655455512110434577889999
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 10235641677513023345655555-42266630104899999999998665448814998538650014578873389
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L-~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi 317 (573)
+...-...++||+.+++.+..|...| .-.+++++.+||+.+|.+|+.+|++||.|++++||||||.+||||+.+|.+||
T Consensus 382 v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344 382 VASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred HHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCCCCEEE
T ss_conf 86158997489885388899999986423576634676366666778999998506706888504665455645763689
Q ss_pred EECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHC
Q ss_conf 705887478999860301037888602564059999999999998506
Q gi|254780601|r 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365 (573)
Q Consensus 318 n~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~ 365 (573)
|||+|...-+|+||+|||||||++|.||+||+..+..+++.|......
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred ECCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 537872247888873025788988616998632553455568999997
No 34
>KOG0329 consensus
Probab=100.00 E-value=0 Score=449.58 Aligned_cols=324 Identities=27% Similarity=0.485 Sum_probs=287.0
Q ss_pred CCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 779--988999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r 4 FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 4 f~~--l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
|.+ |.++|++|+-+-||++|+++|..|||..+-|-|+++||++|.|||+.|+|.-||.|.+... ...+||+|
T Consensus 44 frdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g------~vsvlvmc 117 (387)
T KOG0329 44 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG------QVSVLVMC 117 (387)
T ss_pred HHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHEECCCCCCCEEEEEHHHHHHCCCCCC------EEEEEEEE
T ss_conf 665531899999987325789167644200477634112010025788436552223552378898------07999996
Q ss_pred CCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 99899999999999985446-98799998899879999961289759982231013321000122464318999613110
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
-|||||.||.++...++++. +++++..|||.++.+....|++.||||||||||++.++..+.++|++|+.+||||+|+|
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHCCEEEHHHHHHH
T ss_conf 21899999889999997548884589997553103469988279908976828899998724575320321123337789
Q ss_pred CC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC-CCCCCCCHHCCCCCCCHHHHHHHHC
Q ss_conf 01-001235788875214334225631111222001111210123333233323-2566520000000000024554200
Q gi|254780601|r 161 LD-LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238 (573)
Q Consensus 161 l~-~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~-~~~~~i~~~~~~v~~~~k~~~l~~l 238 (573)
|+ ..-+.|+..|++.+|.++|.++||||++++|...+++||.||..|-+..+. .+.-.+.|+|+.....+|..-|..|
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99878888799986328653203454201315667887755218166502415655333477877766555543566656
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 10235641677513023345655555422666301048999999999986654488149985386500145788733897
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
|+..+..+++||+.+... +. | +-+ |||||+..|||||..|+.|||
T Consensus 278 Ld~LeFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdiervNi~~N 322 (387)
T KOG0329 278 LDVLEFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIERVNIVFN 322 (387)
T ss_pred HHHHHHCCEEEEEEHHHH------------------------------HH-H---HHH-HHHHHHHCCCCCCCCCEEEEC
T ss_conf 545441204676203445------------------------------55-6---666-677664046667332202322
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHH-HHHHHHHHHHHHHCCCC
Q ss_conf 058874789998603010378886025640599-99999999998506641
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANVSVV 368 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~-e~~~~~~i~~~~~~~~~ 368 (573)
||+|.+..+|+||+||+||.|.+|.||+|++.. +...+..+.......+.
T Consensus 323 Ydmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329 323 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEEHHCCHHHHHHHCHHHHHHHCCHH
T ss_conf 689887127888762430356555201000111267774316676550086
No 35
>KOG0349 consensus
Probab=100.00 E-value=0 Score=443.76 Aligned_cols=352 Identities=31% Similarity=0.458 Sum_probs=298.9
Q ss_pred CCCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC--------------
Q ss_conf 99777--99889999999787987898999999999759969999289874689999999998610--------------
Q gi|254780601|r 1 MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-------------- 64 (573)
Q Consensus 1 m~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~-------------- 64 (573)
|+-|+ ++-++|-.|..++.|+-||.||+.+||.||.|-||+..|.||||||-||.||+||-+..
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred CCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 93167518656765334431245665443120347863872788751589875612035499999988767614467776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780601|r 65 -------------------------------------------------------------------------------- 64 (573)
Q Consensus 65 -------------------------------------------------------------------------------- 64 (573)
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEECHHHCCCCCCCCCC
T ss_conf 56787652435711367545676875501346776642353102320276179999960486245102430143344766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780601|r 65 -------------------------------------------------------------------------------- 64 (573)
Q Consensus 65 -------------------------------------------------------------------------------- 64 (573)
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEECCHHHCCCCCCHHEEECCCEEEEE
T ss_conf 54556576676454545100367554344046889626866888317532661487572112355661025505567774
Q ss_pred --------------------CCC------C----------CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH---CCCEE
Q ss_conf --------------------421------2----------25568827999849989999999999998544---69879
Q gi|254780601|r 65 --------------------END------R----------FSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVV 105 (573)
Q Consensus 65 --------------------~~~------~----------~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~---~~~~v 105 (573)
-.+ . ....++|+++|+-|.||||.|+++.++.+..+ ..++.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 48875556999861775238852333476656433575556699984006854768899998766998876438765644
Q ss_pred EEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC------C
Q ss_conf 9998899879999961289759982231013321000122464318999613110010012357888752143------3
Q gi|254780601|r 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------K 179 (573)
Q Consensus 106 ~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~------~ 179 (573)
.+++||.-...|...|++|.|||||||||+.++++.|.+.|++++|||+||||-+|..|+.+-|++...++|. .
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~r 400 (725)
T KOG0349 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFR 400 (725)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCEEEEEEEEEEECCHHHHHHCCCHHHHHHHHCCCHHHHCCCCC
T ss_conf 41235577688888762486055158415655542065133234789832336655054178999986334133147761
Q ss_pred CCEEEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC------------------HH---------
Q ss_conf 42256311112-220011112101233332333232566520000000000------------------02---------
Q gi|254780601|r 180 RRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS------------------DR--------- 231 (573)
Q Consensus 180 ~q~~l~SAT~~-~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~------------------~k--------- 231 (573)
-|..++|||+. -+|.++.++.|+-|..|++..+......+.|....|.+. .|
T Consensus 401 lq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~S 480 (725)
T KOG0349 401 LQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVS 480 (725)
T ss_pred CCCCEEEEEEEEEEEEEHHHHHCCCCEEEECCCCCCCCHHHCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 23311433776777666333431474157503554564322153442277668608887645214776632332456579
Q ss_pred -------H-----HHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf -------4-----554200102356416775130233456555554226---6630104899999999998665448814
Q gi|254780601|r 232 -------D-----NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRAR 296 (573)
Q Consensus 232 -------~-----~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~q~~R~~~~~~fr~g~~~ 296 (573)
. +.-...++.+...++||||+|+.+|+.|-..+.++| |+|.+||||....+|.+.++.|+.+.++
T Consensus 481 pe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk 560 (725)
T KOG0349 481 PENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK 560 (725)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEE
T ss_conf 99845665775473320105553467459997035661679999987278640368882478826778878766525727
Q ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf 99853865001457887338970588747899986030103788860256405999
Q gi|254780601|r 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 297 vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
+|||||||||||||.++.++||.-+|++...|||||||.|||-+-|.||+|+...-
T Consensus 561 flictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ 616 (725)
T KOG0349 561 FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVP 616 (725)
T ss_pred EEEEEHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHCCEEEEEEECCC
T ss_conf 99971044356654277259998558654115456402014544050477764165
No 36
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=0 Score=429.05 Aligned_cols=201 Identities=40% Similarity=0.612 Sum_probs=192.1
Q ss_pred CC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 77--9988999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r 4 FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 4 f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
|+ +|++.|+++|+++||++|||||+++||.+++|+|++++|+||||||+||+||+++++..... ..+|+||||+
T Consensus 1 F~~l~L~~~ll~~l~~~g~~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~----~~~~~alil~ 76 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK----KDGPQALILA 76 (203)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC----CCCCEEEEEE
T ss_conf 986965999999999879999999999999999779988997579972228888699999861667----6896699996
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99899999999999985446987999988998799999612897599822310133210001224643189996131100
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml 161 (573)
||||||.||++++.+++++.++++.+++||.++..|.+.|+++||||||||||+.+|++++.+++++++++|+||||+||
T Consensus 77 PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll 156 (203)
T cd00268 77 PTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHH
T ss_conf 87999999999999850579838999838988799999985387599968189999998488651322489998588887
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 10012357888752143342256311112220011112101233332
Q gi|254780601|r 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVN 208 (573)
Q Consensus 162 ~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~ 208 (573)
++||.++++.|++.+|+++|+++||||+|+++.+++++||+||+.|.
T Consensus 157 ~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l~~~~l~~Pv~I~ 203 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred HCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEC
T ss_conf 47769999999985896777999980499889999999779950879
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=0 Score=374.58 Aligned_cols=373 Identities=19% Similarity=0.271 Sum_probs=266.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 77998899999997879878989999999997599699992898746899999999986104212255688279998499
Q gi|254780601|r 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 (573)
Q Consensus 4 f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT 83 (573)
|+-|||.+.++..+ +|.+|||+|+++||.+++|+|+++.||||||||+|+.||+|..|...........+.++|+|+|+
T Consensus 15 ~~~l~p~v~~wf~~-~~~~p~~~Q~~a~~~i~~G~~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPL 93 (878)
T PRK13767 15 LSLLHPYVAEWFKR-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPL 93 (878)
T ss_pred HHHCCHHHHHHHHH-CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCH
T ss_conf 76279899999985-37999989999999996799889989998139999999999999850003677887289996847
Q ss_pred HHHHHHHHHHH-------HHHHHH-----CCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCC--CCCCCC
Q ss_conf 89999999999-------998544-----6987999988998799999612897599822310133210001--224643
Q gi|254780601|r 84 RELAVQVGREL-------EWLYAK-----TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG--LNISHL 149 (573)
Q Consensus 84 rELa~Qv~~~~-------~~l~~~-----~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~--l~l~~v 149 (573)
|.|+..++..+ ..++.. .+++|..-.|.++-.+..+.+++.|||+|+||..|.-++.... -.|++|
T Consensus 94 kAL~~D~~r~L~~pl~~i~~~~~~~g~~~~~i~v~vr~GDT~~~er~r~~~~pp~ILiTTPEsL~lll~~~~~~~~l~~l 173 (878)
T PRK13767 94 RALNNDIHRNLEEPLEEIREIAKERGIELPEIRHAVRTGDTSSYEKQKMLRKPPHILITTPETLAILLNSPKFREKLRTV 173 (878)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHCCC
T ss_conf 98899999988869999999987527887774477636999999999997489987987989999995496799985589
Q ss_pred EEEEEECCCCCCCC--H--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHC------CCCCCCCCCCCCCCCCCC
Q ss_conf 18999613110010--0--1235788875214334225631111222001111210------123333233323256652
Q gi|254780601|r 150 KAVVLDEADEMLDL--G--FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ------KDAVRVNIASENRQHSDI 219 (573)
Q Consensus 150 ~~lVlDEaD~ml~~--g--f~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~------~~p~~i~~~~~~~~~~~i 219 (573)
+++|+||+..++.- | +.-.++++....+.+.|.+.+|||+.+. ..+ .+|+ .+|..+.+...... ..+
T Consensus 174 ~~VIvDE~H~l~~~kRG~~l~l~L~RL~~~~~~~~~riglSATv~~~-~~~-a~~L~g~~~~g~~r~~~iv~~~~~-k~~ 250 (878)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEELVGGEFVRIGLSATIEPL-EEV-AKFLVGYNDDGEPRDCEIVDTRFA-KPI 250 (878)
T ss_pred CEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHH-HHHHCCCCCCCCCCCEEEECCCCC-CCC
T ss_conf 99998171675247745899999999998668998799996464899-999-998515566799985289546877-874
Q ss_pred CHHCC-------CCCCCHH----HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC------CCCCCCCCCCCHHH
Q ss_conf 00000-------0000002----4554200102356416775130233456555554226------66301048999999
Q gi|254780601|r 220 DYRAV-------LVALSDR----DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL------FQVVALSGELSQQE 282 (573)
Q Consensus 220 ~~~~~-------~v~~~~k----~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g------~~~~~lhg~~~q~~ 282 (573)
....+ .....+- +..+..++ ....++||||||+..||.++..|...+ -.+.+.||.|++++
T Consensus 251 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~i--~~~~~tLvF~NtR~~aE~~~~~L~~~~~~~~~~~~i~~HHgSls~e~ 328 (878)
T PRK13767 251 DIKVLCPVDDLIHTPAEEISEALYETLDELI--QEHRTTLIFTNTRSGAERVVYKLRKRYPEEYDEDNIGAHHSSLSREV 328 (878)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--HHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
T ss_conf 2688445621245885568999999999999--83897799915589999999999985343067543222017789999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCC-CCCCCCEEEEEECH-HHHHHHHHHH
Q ss_conf 999986654488149985386500145788733897058874789998603010-37888602564059-9999999999
Q gi|254780601|r 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG-RAGRKGMSVFVIPQ-NMQRRAERLF 360 (573)
Q Consensus 283 R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg-Rag~~G~ai~l~~~-~e~~~~~~i~ 360 (573)
|..+.+.|++|+++++|||.-+..||||.+|++||||+.|.++..|+||+||.| |-|....++.+.+. .|.-....+.
T Consensus 329 R~~vE~~lk~G~l~~vV~TsSLELGIDiG~Vd~Viq~gsP~svarllQR~GRsGH~~g~~s~g~~vp~~~~ellE~~a~~ 408 (878)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLL 408 (878)
T ss_pred HHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 99999998579986899827365077777525899758961189999983357899998046999979816899999999
Q ss_pred HHH-HCCCCCCCCCC-HHHHHHHH
Q ss_conf 985-06641056899-99988889
Q gi|254780601|r 361 REA-NVSVVWEPAPS-VEAIRERD 382 (573)
Q Consensus 361 ~~~-~~~~~~~~~Ps-~eeI~~~~ 382 (573)
+.+ .-.++...+|. .-||...+
T Consensus 409 ~~~~~g~le~~~~~~~~lDVLaq~ 432 (878)
T PRK13767 409 KKAREGKIDRVHIPKNPLDVLAQH 432 (878)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999809987667898879999999
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=0 Score=371.29 Aligned_cols=333 Identities=20% Similarity=0.296 Sum_probs=267.7
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 99889999999-78798789899999999975996999928987468999999999861042122556882799984998
Q gi|254780601|r 6 NIPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 6 ~l~~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
||...-.+.|+ -.||...-|.|.++|+.+|.|+|+++..|||+||+++|.||.+.. . -.+||++|+.
T Consensus 8 ~~~~~a~~~L~~~FG~~~Fr~~Q~e~i~~~l~g~D~l~~mpTG~GKSlcyQlPal~~--~----------g~tiVisPLi 75 (607)
T PRK11057 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALVL--D----------GLTLVVSPLI 75 (607)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--C----------CCEEEECCHH
T ss_conf 167799999998669843457699999999869988998789955979999999877--9----------9889986879
Q ss_pred HHHH-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH---CC-CCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 9999-999999998544698799998899879999961---28-975998223101332100012246431899961311
Q gi|254780601|r 85 ELAV-QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 85 ELa~-Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l---~~-~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
.|.. || ..|. ..|+.++++.++.+..++.+.+ .. ..++|..||+|+...--...+.--++.++|+|||+.
T Consensus 76 sLm~DQv----~~L~-~~gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHc 150 (607)
T PRK11057 76 SLMKDQV----DQLL-ANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHC 150 (607)
T ss_pred HHHHHHH----HHHH-HCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 9999999----9999-7899299956999999999999999759987999885585697899999718866488530666
Q ss_pred CCCCH--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HHHH-HCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH
Q ss_conf 00100--12357888---75214334225631111222001-1112-101233332333232566520000000000024
Q gi|254780601|r 160 MLDLG--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232 (573)
Q Consensus 160 ml~~g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~-~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~ 232 (573)
+..+| |+++...| .+.+| ...++.++||.++.+.+ +.+. .|.+|..+. .+... ||+. |..++...+.
T Consensus 151 vs~WGhdFRp~Y~~l~~l~~~~~-~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~-~~f~R--pNl~--~~v~~~~~~~ 224 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDR--PNIR--YMLMEKFKPL 224 (607)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHCCCCCCEEE-CCCCC--CCCE--EEEEECCCHH
T ss_conf 75415500388999999999769-99748999636878999999970899980782-57788--8741--4555447739
Q ss_pred HHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf 55420010235641677513023345655555422666301048999999999986654488149985386500145788
Q gi|254780601|r 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 (573)
Q Consensus 233 ~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~ 312 (573)
+.+.+++..+...++||||.|++.|+++++.|...|+++.++|++|++.+|..+.+.|.+++++|+|||.....|||.||
T Consensus 225 ~~~~~~~~~~~~~sgIIYc~trk~~e~la~~L~~~G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~d 304 (607)
T PRK11057 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPN 304 (607)
T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC
T ss_conf 99999987068997799969289999999999857975453058999789999999875688758997501105767777
Q ss_pred CCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 7338970588747899986030103788860256405999999999999
Q gi|254780601|r 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 313 v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~ 361 (573)
|.+||||++|.+.|+|.+-+||+||.|....|++|+++.|..+++.+..
T Consensus 305 VR~ViH~~~P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~D~~~~~~~i~ 353 (607)
T PRK11057 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHH
T ss_conf 6679977899999999998863525898541899856878999999985
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=0 Score=343.10 Aligned_cols=361 Identities=22% Similarity=0.321 Sum_probs=275.6
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 97779988999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r 2 KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 2 ~~f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
..|+-|++.+.++++.. |.+|||.|..+||.+.+|+|+++.||||||||+|-.||+++.|.... ......+..||.++
T Consensus 3 ~~~~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIs 80 (814)
T COG1201 3 EIFNILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYIS 80 (814)
T ss_pred CHHHHCCHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEC
T ss_conf 33443489999999985-08998789999999858984699868999737999999999998606-88888856999957
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCC--CCCCCEEEEEECCCC
Q ss_conf 998999999999999854469879999889987999996128975998223101332100012--246431899961311
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADE 159 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l--~l~~v~~lVlDEaD~ 159 (573)
|-|.|+..+...+.+.+...|+.|....|.++-.+..+.++++|||+|.||+-|.=++....+ .|.+|+|+|+||.-+
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHH
T ss_conf 07888789999999999975984444228788677630469999689958348999836888999860780999512545
Q ss_pred CCCC--HH--HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC---CCCCCCCCCCCCCCCCCCHHCCCCCC----
Q ss_conf 0010--01--2357888752143342256311112220011112101---23333233323256652000000000----
Q gi|254780601|r 160 MLDL--GF--RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK---DAVRVNIASENRQHSDIDYRAVLVAL---- 228 (573)
Q Consensus 160 ml~~--gf--~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~---~p~~i~~~~~~~~~~~i~~~~~~v~~---- 228 (573)
|.+- |. .=.++++....+ +-|++-.|||+.+. ..+ .+||. ++..|........ .+... .++.
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~v-arfL~g~~~~~~Iv~~~~~k~---~~i~v-~~p~~~~~ 233 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEV-AKFLVGFGDPCEIVDVSAAKK---LEIKV-ISPVEDLI 233 (814)
T ss_pred HHCCCCCHHHHHHHHHHHHHCC-CCEEEEEHHCCCCH-HHH-HHHHCCCCCCEEEEECCCCCC---CEEEE-EECCCCCC
T ss_conf 4345653134332999985175-53797540215888-999-998547898429997456775---31799-80477500
Q ss_pred ------CHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf ------0024554200102356416775130233456555554226-663010489999999999866544881499853
Q gi|254780601|r 229 ------SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 (573)
Q Consensus 229 ------~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T 301 (573)
...+..+..+++.+ ..++||+||+..++.++..|...+ ..+...||.++.++|..+.++|++|+++.+|||
T Consensus 234 ~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T 311 (814)
T COG1201 234 YDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT 311 (814)
T ss_pred CCCCHHHHHHHHHHHHHHHC--CCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 02624678999999999616--8589997272789999999987268755653166657789999999866886299980
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC-CCCCCEEEEEECH-HHHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf 865001457887338970588747899986030103-7888602564059-9999999999985-0664105689
Q gi|254780601|r 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQ-NMQRRAERLFREA-NVSVVWEPAP 373 (573)
Q Consensus 302 DvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR-ag~~G~ai~l~~~-~e~~~~~~i~~~~-~~~~~~~~~P 373 (573)
.-+.-|||+.+|++||||.-|.++...++|+||.|. .|..-..+.+... .|.-.-..|.+.+ .-+++..++|
T Consensus 312 SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~ 386 (814)
T COG1201 312 SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIP 386 (814)
T ss_pred CCHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 642205024774299981793888888685031466568864279981679999999999999971876667788
No 40
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.9e-42 Score=300.13 Aligned_cols=320 Identities=23% Similarity=0.342 Sum_probs=226.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 79878989999999997599699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
+.-++-.-|.......+.+ |+|+..|||+|||+..++.+.+++... .-.+|+|+||+.|+.|.++.+..+.
T Consensus 12 ~~ie~R~YQ~el~~~Al~~-NtiVvLPTG~GKT~IA~lvi~~~l~~~--------~gKilFLaPT~pLV~Qq~~~~~~~l 82 (764)
T PRK13766 12 NTIEARLYQQLLAAKALKG-NTLVVLPTGLGKTAIALLVIAERLQKY--------GGKVLILAPTKPLVEQHAEFFRKFL 82 (764)
T ss_pred CCCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHC--------CCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 8776538799999999858-989995998668999999999999748--------9889998588889999999999970
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCC
Q ss_conf 4469879999889987999996128975998223101332100012246431899961311001-001235788875214
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSP 177 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~-~gf~~~i~~i~~~~p 177 (573)
.....+++.+.|+.+........ ...+|+|+||+.+.+.+..+.++++++..+|+|||.+... -.|..-+...+. ..
T Consensus 83 ~i~~~~i~~ltG~~~~~~r~~~w-~~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~-~~ 160 (764)
T PRK13766 83 NIDPEKIVVLTGEISPEKRAALW-EKAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE-DA 160 (764)
T ss_pred CCCCCEEEEEECCCCHHHHHHHH-CCCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH-CC
T ss_conf 99955289998887827689986-07999999908999999829867888228999746666677628999999985-37
Q ss_pred CCCCEEEEECCCCCC---CHHHH------------------HHHCCCCC----CCCCC----------------------
Q ss_conf 334225631111222---00111------------------12101233----33233----------------------
Q gi|254780601|r 178 KKRRMLMFSATISPA---ITTLA------------------KNYQKDAV----RVNIA---------------------- 210 (573)
Q Consensus 178 ~~~q~~l~SAT~~~~---i~~l~------------------~~~~~~p~----~i~~~---------------------- 210 (573)
+..+.+-+|||-... |.+++ ..|++.+. .|...
T Consensus 161 ~~PrILGLTASPGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L~ 240 (764)
T PRK13766 161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKLK 240 (764)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78558850368876448999999865987289614444344543356732799807978999999999999999999999
Q ss_pred --------CCCCC------------------CCC-------------CCH--------------HCC-------------
Q ss_conf --------32325------------------665-------------200--------------000-------------
Q gi|254780601|r 211 --------SENRQ------------------HSD-------------IDY--------------RAV------------- 224 (573)
Q Consensus 211 --------~~~~~------------------~~~-------------i~~--------------~~~------------- 224 (573)
....+ .+. +.| .|+
T Consensus 241 ~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~k 320 (764)
T PRK13766 241 ELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGSK 320 (764)
T ss_pred HCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 66970045554689999999999999886468799999999999999999999999851899999999999730133326
Q ss_pred ----------------CCC----CCHHHHHHHHCCC----CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC----
Q ss_conf ----------------000----0002455420010----235641677513023345655555422666301048----
Q gi|254780601|r 225 ----------------LVA----LSDRDNAIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG---- 276 (573)
Q Consensus 225 ----------------~v~----~~~k~~~l~~ll~----~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg---- 276 (573)
.+. ...|+..|..+|. ..+..++||||++|..|..+++.|...++++..+.|
T Consensus 321 ~~k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~ik~~~fVGq~s~ 400 (764)
T PRK13766 321 ASKRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGIKAIRFVGQASR 400 (764)
T ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 78998758778999998764467893799999999999726999808999276799999999986589972289836898
Q ss_pred ----CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECH
Q ss_conf ----99999999998665448814998538650014578873389705887478999860301037888602564059
Q gi|254780601|r 277 ----ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 (573)
Q Consensus 277 ----~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~ 350 (573)
+|+|.++..++++||+|.+++||||+|+..|||||.|++||.||...+.-.+|+|.||||| .+.|.++.|++.
T Consensus 401 ~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~IR~IQR~GRTGR-~r~G~v~vLi~~ 477 (764)
T PRK13766 401 DGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR-QRGGRVVVLIAK 477 (764)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCC-CCCCEEEEEEEC
T ss_conf 78889898999999999857998889876766448888778889993799619999997466567-789749999956
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=100.00 E-value=2.4e-43 Score=310.67 Aligned_cols=358 Identities=22% Similarity=0.328 Sum_probs=281.1
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-HHHHHHHHH
Q ss_conf 7879878989999999997599699992898746899999999986104212255688279998499899-999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL-AVQVGRELE 95 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL-a~Qv~~~~~ 95 (573)
--||...-|-|+..|..+|.|+|+++.-|||-||.+||-||.|-+ .. .+|||+|-=-| .-||.
T Consensus 8 ~FGY~~FR~gQe~II~~vL~g~~~l~vmPTGGGKSlCYQ~PALll--~G----------lt~VISPLIsLMkDQVd---- 71 (607)
T TIGR01389 8 TFGYDDFRGGQEEIIEHVLDGRDVLVVMPTGGGKSLCYQVPALLL--KG----------LTVVISPLISLMKDQVD---- 71 (607)
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH--CC----------CEEEECCHHHHHHHHHH----
T ss_conf 468776773158999998477985897389985127772178872--89----------87998423631477999----
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHH---HCC-CCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCH--HHHHH
Q ss_conf 9854469879999889987999996---128-97599822310133210001224643189996131100100--12357
Q gi|254780601|r 96 WLYAKTGVVVAVCIGGVSVHRERRD---LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDI 169 (573)
Q Consensus 96 ~l~~~~~~~v~~~~gg~~~~~q~~~---l~~-~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~g--f~~~i 169 (573)
.| +..|+..+.+-.+.+.+++.+- +.+ ..++|---|.||..---...|.=..+..|-+|||--.=-.| |+++.
T Consensus 72 ~L-~~~Gv~Aa~lNSt~s~~E~~~i~~~~~~G~~~LLYvAPERL~~~~Fl~~L~~~~i~L~AvDEAHCvSQWGHDFRPeY 150 (607)
T TIGR01389 72 QL-RAAGVAAAYLNSTLSAKEQQEIEKALVNGELKLLYVAPERLEQDYFLNMLKRLTIALLAVDEAHCVSQWGHDFRPEY 150 (607)
T ss_pred HH-HHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHH
T ss_conf 99-86070145203778888999999998419815775167132118999887319930899832502166888875658
Q ss_pred HHH---HHHCCCCCCEEEEECCCCCCCHH-HHHHH-CCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 888---75214334225631111222001-11121-01233332333232566520000000000024554200102356
Q gi|254780601|r 170 EFI---LDSSPKKRRMLMFSATISPAITT-LAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244 (573)
Q Consensus 170 ~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~~-~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~ 244 (573)
..| ....|...-.+-+.||=.+++.+ +.+.. +.+|-.+. .+... ||| +|-.+...++...|...|..+..
T Consensus 151 ~~L~~l~~~fp~~P~~iALTATAd~~t~~DI~~~L~L~~~~~f~-~SFdR--pNl--~~~v~~k~n~~~~l~~yl~~~~~ 225 (607)
T TIGR01389 151 RRLGELAERFPQVPTRIALTATADAETRQDIVELLRLKDANEFI-SSFDR--PNL--RFSVVKKNNKKKFLLEYLKKHRE 225 (607)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC-CCCCC--HHH--HHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 99999998678986699872489987899999970889865412-56775--114--33431203781368999750799
Q ss_pred -CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC
Q ss_conf -4167751302334565555542266630104899999999998665448814998538650014578873389705887
Q gi|254780601|r 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323 (573)
Q Consensus 245 -~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~ 323 (573)
.++||||+||+.||++++.|.+.|++|.++|++|+.+.|....+.|-.-...|+|||-....|||-|||.+|||||+|.
T Consensus 226 G~SGIIYa~sR~~VE~~~~~L~s~G~~A~~YHAGL~~~~R~e~Q~~Fl~d~~~vmVAT~AFGMGIdKpnVRFViH~d~P~ 305 (607)
T TIGR01389 226 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHADMPK 305 (607)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 95347876770458999999974796204036798776899997544462554888871235874787654888636874
Q ss_pred CHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 47899986030103788860256405999999999999850664105689999988889986554431012220455776
Q gi|254780601|r 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403 (573)
Q Consensus 324 ~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~~~~~~~~~~~~~~~~ 403 (573)
++|+|-+-+||+||.|.+.-||+++++.|+.+.+.......... ..++|...++..+.. ..+.......-+
T Consensus 306 ~~EsYYQE~GRAGRDGlpae~~lly~~~D~~l~~~~I~~s~~~~------~~K~~e~~KL~~m~~---y~~~~~Cr~~~~ 376 (607)
T TIGR01389 306 NIESYYQEAGRAGRDGLPAEAILLYSLADIALLKRFIEQSEADE------DRKQIEREKLDAMLA---YCETQTCRRALI 376 (607)
T ss_pred CHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_conf 21113103554688752677867247778999999974158848------899999999999999---887899999998
Q ss_pred HH
Q ss_conf 66
Q gi|254780601|r 404 VD 405 (573)
Q Consensus 404 ~e 405 (573)
..
T Consensus 377 l~ 378 (607)
T TIGR01389 377 LR 378 (607)
T ss_pred HH
T ss_conf 86
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-41 Score=296.98 Aligned_cols=333 Identities=25% Similarity=0.350 Sum_probs=257.4
Q ss_pred HHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 9999999-787987898999999999759969999289874689999999998610421225568827999849989999
Q gi|254780601|r 10 VIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88 (573)
Q Consensus 10 ~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~ 88 (573)
.+.+.|+ -.||...-|=|..+|..+++|+|+++.-|||.||.++|.||.+-. . + -.||++|---|-.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~---------G-~TLVVSPLiSLM~ 71 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--E---------G-LTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC--C---------C-CEEEECCHHHHHH
T ss_conf 78999999709130388889999999658867998538987106743678865--9---------9-7899785688899
Q ss_pred -HHHHHHHHHHHHCCCEEEEEECCCCHHHHH---HHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf -999999998544698799998899879999---961289-759982231013321000122464318999613110010
Q gi|254780601|r 89 -QVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163 (573)
Q Consensus 89 -Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~---~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~ 163 (573)
||. .+- ..|++++++-+..+.++.. ..|..| .+++.-+|.|+..---...|.-..+..+|||||--.-..
T Consensus 72 DQV~----~l~-~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 72 DQVD----QLE-AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHH----HHH-HCCCEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf 9999----999-75965204424367877999999986496459998813631768999997088756996217777641
Q ss_pred H--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HHHHH-CCCCCCCCCCCCCCCCCCCCHHCCCCC-CCHHHHHH
Q ss_conf 0--12357888---75214334225631111222001-11121-012333323332325665200000000-00024554
Q gi|254780601|r 164 G--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LAKNY-QKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAI 235 (573)
Q Consensus 164 g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~~-~~~p~~i~~~~~~~~~~~i~~~~~~v~-~~~k~~~l 235 (573)
| |+++...+ ...+| +...+.++||-++.+.. +...+ +.+|..+ ..+.+ -|||........ ..++..++
T Consensus 147 GhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~-~~sfd--RpNi~~~v~~~~~~~~q~~fi 222 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIF-RGSFD--RPNLALKVVEKGEPSDQLAFL 222 (590)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE-EECCC--CCHHHHHHHHCCCHHHHHHHH
T ss_conf 7743776899999985179-9977997378986789999998467886648-71589--852345564256478889998
Q ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 20010235641677513023345655555422666301048999999999986654488149985386500145788733
Q gi|254780601|r 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315 (573)
Q Consensus 236 ~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~ 315 (573)
.. +.......+||||.||+.|++++++|...|+++..+||+|+..+|..+.+.|.+++++|+|||-....|||-|||.+
T Consensus 223 ~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 223 AT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HH-HCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 74-13246897289993377599999999977972577518988999999999971699868999646247767888407
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 8970588747899986030103788860256405999999999999850
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~ 364 (573)
|||||+|.+.|+|++-+||.||.|....||+|+++.|..+.+.+.....
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 9980699898999999713567877021788606300799999998515
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-39 Score=284.60 Aligned_cols=338 Identities=25% Similarity=0.286 Sum_probs=247.4
Q ss_pred CCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99777-9988999999978798789899999999-975996999928987468999999999861042122556882799
Q gi|254780601|r 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78 (573)
Q Consensus 1 m~~f~-~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l 78 (573)
|..=| +||+.+.+.+++.|++++.|.|.+|+.. +++|+++++.||||||||+..-+.++.++.... -.++
T Consensus 1 m~i~~l~~~~~~~~~~~~~gI~~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l~~~--------~k~i 72 (717)
T PRK00254 1 MRVEELRVDERIKEILKERGIEELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLLREG--------GKAV 72 (717)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CEEE
T ss_conf 95444399989999999769872689999998742336981899899887489999999999998529--------9299
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 98499899999999999985446987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 79 il~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
.++|++.||.|-+.+++.+ ...|++|...+|+.+.... .+ ...+|+|+||.++-.+++++.-.+.++.++|+||+-
T Consensus 73 yi~P~kALa~EK~~~f~~~-~~~g~~V~~~tGd~~~~~~--~l-~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH 148 (717)
T PRK00254 73 YLVPLKALAEEKFREFKDW-EVLGLRVAMATGDYDSKDE--WL-GKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIH 148 (717)
T ss_pred EECCHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCC--CC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEE
T ss_conf 9926799999999999877-7449889897489888701--04-689999988899999997162565326989997607
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC------CCCCCHHH
Q ss_conf 100100123578887521433422563111122200111121012333323332325665200000------00000024
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV------LVALSDRD 232 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~------~v~~~~k~ 232 (573)
.+=|-+=-.-+|.++..++...|.+..|||+|+ +.++++ |+. ... +.++...++--++.++ .-...+++
T Consensus 149 ~igD~~RG~~lE~~l~~l~~~~qiIgLSATi~N-~~~la~-WL~-a~~--~~~~~RPVpL~~~v~~~~~~~~~~~~~~~~ 223 (717)
T PRK00254 149 LIGSRDRGATLEFILTHMLGRAQIIGLSATIGN-PEELAE-WLN-AEL--IVSDWRPVKLRKGVFYQGFVFWEDGKIDRY 223 (717)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC-HHHHHH-HHC-CCC--CCCCCCCCCEEEEEEECCEEEECCCCCHHH
T ss_conf 888987409999999951003669999633499-899999-828-852--156885775276442066011045620544
Q ss_pred HHHHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHC---------------------------------CCCCCCCCCC
Q ss_conf 5542001-0-235641677513023345655555422---------------------------------6663010489
Q gi|254780601|r 233 NAIVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEH---------------------------------LFQVVALSGE 277 (573)
Q Consensus 233 ~~l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~---------------------------------g~~~~~lhg~ 277 (573)
.....++ + ......+||||+||+.|+.++..|... -..+...|++
T Consensus 224 ~~~~~l~~~~~~~~~~~LVF~~tR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~l~~GVafHHAG 303 (717)
T PRK00254 224 NSWEELVYDAVKRGKGALIFVNMRRKAEKTALELAKKIKNLLTKPELRELKELADSLEENPTNEKLAKALRGGVAFHHAG 303 (717)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHCCC
T ss_conf 30789999999749981899955799999999999988763076889999999999873765189999997083121589
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC---------CCCHHHHHHHHCCCCCCCC--CCEEEE
Q ss_conf 99999999986654488149985386500145788733897058---------8747899986030103788--860256
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL---------SSNPENLLHRSGRTGRAGR--KGMSVF 346 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~---------P~~~~~yvHR~GRtgRag~--~G~ai~ 346 (573)
|+..+|.-+.+.|++|.++|||||.-+|-|+++|.-..||. +. +-++..|.+=+||+||.|- .|.||.
T Consensus 304 L~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~-~~~~~~~~g~~~i~~~e~~QM~GRAGR~G~D~~G~~ii 382 (717)
T PRK00254 304 LGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIR-DTWRYSEFGMERIPVLEIQQMMGRAGRPKYDEVGEAII 382 (717)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEEE-CCEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 99889999999998799589981644650457760599992-65670799723787536888625069998788850899
Q ss_pred EECHHHHHHH
Q ss_conf 4059999999
Q gi|254780601|r 347 VIPQNMQRRA 356 (573)
Q Consensus 347 l~~~~e~~~~ 356 (573)
+...+|...+
T Consensus 383 i~~~~~~~~~ 392 (717)
T PRK00254 383 VSTTEDPSKV 392 (717)
T ss_pred EECCCCHHHH
T ss_conf 9548578999
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-39 Score=284.61 Aligned_cols=328 Identities=24% Similarity=0.272 Sum_probs=236.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9988999999978798789899999999-975996999928987468999999999861042122556882799984998
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
+||+.+.+.+++.|++++.|.|.+|++. +++|+++++.||||||||+..-+.++..+... ..++.++|++
T Consensus 7 ~LP~~~~~~~~~~gI~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g---------~k~vYi~P~k 77 (736)
T PRK02362 7 PLPDGVIDFYEGSGIEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEG---------GKALYIVPLR 77 (736)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---------CEEEEECCHH
T ss_conf 9998999999976997578999999986435698189979999858999999999999839---------9799985879
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 99999999999985446987999988998799999612897599822310133210001224643189996131100100
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~g 164 (573)
.||.|.+..+..+. ..|++|....|..+...+ .+. ..||+|+||.++-.+++.+.-.+++|.++|+||.-. ++-+
T Consensus 78 ALa~EK~~~~~~~~-~~gi~V~~~tGd~~~~~~--~l~-~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHl-i~d~ 152 (736)
T PRK02362 78 ALASEKFEEFSEFS-ELGLRVGISTGDYDRRDE--YLG-RNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHL-IDSP 152 (736)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEECCCCCCHH--HCC-CCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEE-ECCC
T ss_conf 99999999999874-579989998089887831--436-899999997999999844816765089899817678-6688
Q ss_pred HH-HHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCC-----------CCCCC
Q ss_conf 12-35788875---21433422563111122200111121012333323332325665200000-----------00000
Q gi|254780601|r 165 FR-DDIEFILD---SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----------LVALS 229 (573)
Q Consensus 165 f~-~~i~~i~~---~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~-----------~v~~~ 229 (573)
.+ .-+|.++. .++...|.+..|||+|+. .++++ ||.-. .+. .+-..++-.++.++ .+...
T Consensus 153 ~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~-~~la~-WL~a~-~~~--s~~RPV~L~~~v~~~~~~~~~~~~~~~~~~ 227 (736)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDMQVIALSATIGNA-DELAA-WLDAE-LVD--SEWRPVDLREGVFYGGAIHFKDTERELEVP 227 (736)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHH-HHCCC-CCC--CCCCCCCCEEEEEECCEECCCCCCCHHCCC
T ss_conf 72499999999997338774389862455899-99999-83886-215--898886755656507701035100300025
Q ss_pred HHHHHHHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHC------------------------------------CCCCC
Q ss_conf 02455420010-235641677513023345655555422------------------------------------66630
Q gi|254780601|r 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEH------------------------------------LFQVV 272 (573)
Q Consensus 230 ~k~~~l~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~------------------------------------g~~~~ 272 (573)
.+...+.-+++ ..+..++||||+||+.|+.++..|... .+.+.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~LVF~~SR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~L~~~l~~GVa 307 (736)
T PRK02362 228 SKDEDLNLVLDTLDEGGQCLVFVSSRRNAEAFAKRAASALKKALSAEEREALAGIAEEIREVSETDTSKVLADCVRSGAA 307 (736)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEE
T ss_conf 64058999999997399069998249999999999987524215756688999999999734442035999999960948
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----EC-----CCCCHHHHHHHHCCCCCCC--CC
Q ss_conf 1048999999999986654488149985386500145788733897----05-----8874789998603010378--88
Q gi|254780601|r 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AE-----LSSNPENLLHRSGRTGRAG--RK 341 (573)
Q Consensus 273 ~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d-----~P~~~~~yvHR~GRtgRag--~~ 341 (573)
..|++|+..+|..+.+.|++|.++|||||.-.|-|+++|.=..||. || -|-+.-.|.+=+||+||.| ..
T Consensus 308 fHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~D~~ 387 (736)
T PRK02362 308 FHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPARRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRLDPY 387 (736)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCCCCC
T ss_conf 51599998999999999987998389725166505578526999804367369888336889999999852489988988
Q ss_pred CEEEEEECHHH
Q ss_conf 60256405999
Q gi|254780601|r 342 GMSVFVIPQNM 352 (573)
Q Consensus 342 G~ai~l~~~~e 352 (573)
|.||.+....+
T Consensus 388 G~aili~~~~~ 398 (736)
T PRK02362 388 GEAVLLAKSYD 398 (736)
T ss_pred CEEEEEECCHH
T ss_conf 62999967827
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.5e-39 Score=280.85 Aligned_cols=340 Identities=22% Similarity=0.271 Sum_probs=243.1
Q ss_pred CCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99777-99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 1 m~~f~-~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
|..-| +||+.+++.++..|| ++.|-|..|++.+++|+++++.||||||||+..-+.++..+... -+++.
T Consensus 1 m~i~~~~~~~~~~~~~~~~g~-~l~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~~---------~k~iy 70 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---------LKSIY 70 (674)
T ss_pred CCHHHCCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---------CCEEE
T ss_conf 952332999799999996799-88989999999997799599978999869999999999999858---------97999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
++|.+.||.|.+.++..+. ..+++|...+|+.+.... .+ +..+|+|+||.++-.++++..-.+++|.++|+||.-.
T Consensus 71 i~P~kAL~~EK~~~~~~~~-~~g~~v~~~tGd~~~~~~--~~-~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD--FI-KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred ECCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC--CC-CCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEE
T ss_conf 8778999999999999887-379827788538889801--02-5589999878999999864950221369899826525
Q ss_pred CCCCHHHHHHHHHH---HHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHC----CCCCCCHHH
Q ss_conf 00100123578887---52143342256311112220011112101233332333232566520000----000000024
Q gi|254780601|r 160 MLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRD 232 (573)
Q Consensus 160 ml~~gf~~~i~~i~---~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~----~~v~~~~k~ 232 (573)
+-|-+=-.-+|.++ ..++.+.|.+..|||+|+ +.++++ |+.- ..+ .++...+|--.+.+ +......+.
T Consensus 147 i~d~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N-~~~la~-WL~a-~~~--~~~~RPVpL~~~v~~~~~~~~~~~~~~ 221 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNA-SLI--KSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHH-HHCC-CEE--ECCCCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 06877249999999999853866079971578689-999998-8388-556--479998660898883460114704323
Q ss_pred HH-HHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHC-------------------------CCCCCCCCCCCCHHHHH
Q ss_conf 55-42001-0-235641677513023345655555422-------------------------66630104899999999
Q gi|254780601|r 233 NA-IVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEH-------------------------LFQVVALSGELSQQERS 284 (573)
Q Consensus 233 ~~-l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~-------------------------g~~~~~lhg~~~q~~R~ 284 (573)
.. +..++ + ..+..++||||+||+.|+.++..|.+. ...+...|++|+..+|.
T Consensus 222 ~~~~~~l~~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHH
T ss_conf 45399999999966994799950758899999999985321010010315431120999999962828306899989999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----EC----CCCCHHHHHHHHCCCCCCC--CCCEEEEEEC-HHHH
Q ss_conf 9986654488149985386500145788733897----05----8874789998603010378--8860256405-9999
Q gi|254780601|r 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AE----LSSNPENLLHRSGRTGRAG--RKGMSVFVIP-QNMQ 353 (573)
Q Consensus 285 ~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d----~P~~~~~yvHR~GRtgRag--~~G~ai~l~~-~~e~ 353 (573)
.+.+.|++|.++|||||.-+|-|+++|.=..||. |+ -|-++..|.+=+||.||.| ..|.||.++. +++.
T Consensus 302 lVE~~f~~g~i~vl~aT~TLAaGVNlPAr~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~~ 381 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHCCCCEEEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 99999986996499714467654478605999930078179971577789899861358999999887089997282289
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780601|r 354 RRAERL 359 (573)
Q Consensus 354 ~~~~~i 359 (573)
..++.+
T Consensus 382 ~~~~~~ 387 (674)
T PRK01172 382 DAAKKY 387 (674)
T ss_pred HHHHHH
T ss_conf 999998
No 46
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=276.24 Aligned_cols=350 Identities=21% Similarity=0.237 Sum_probs=249.7
Q ss_pred CCCCC-CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 77799-88999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r 3 IFENI-PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 3 ~f~~l-~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
.|+.+ .+.+..+|.+.|+..|-+-|..|+..+.+|+|+|+.++||||||+||+|||+++++..... +||+|.
T Consensus 50 ~~~~~~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-------~AL~lY 122 (851)
T COG1205 50 EFPELRDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-------RALLLY 122 (851)
T ss_pred CCHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-------EEEEEE
T ss_conf 6522200378899997434420077999999997799889978998854589899999998308665-------089980
Q ss_pred CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCC----CCCCCCEEEEEE
Q ss_conf 998999999999999854469--87999988998799999612897599822310133210001----224643189996
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLD 155 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~--~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~----l~l~~v~~lVlD 155 (573)
||+.||..-.+.+..+....+ +++....|.++-.+......+.||||++||.-|--++-+.. ..+++++|||+|
T Consensus 123 PtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvD 202 (851)
T COG1205 123 PTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVD 202 (851)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHCCCEEEEE
T ss_conf 43776766999999999847875135443488967888998738997898388999898636882278887327589984
Q ss_pred CCCCCCCCHHHHHHHH-------HHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCC-
Q ss_conf 1311001001235788-------87521433422563111122200111121012333323332325665200000000-
Q gi|254780601|r 156 EADEMLDLGFRDDIEF-------ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA- 227 (573)
Q Consensus 156 EaD~ml~~gf~~~i~~-------i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~- 227 (573)
|+-. -.-.|-.+|-- ++...+...|++..|||+... ..+++.+......+.+..... ....++++..-+
T Consensus 203 ElHt-YrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~-~~~~~~~~~~~p~ 279 (851)
T COG1205 203 ELHT-YRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGS-PRGLRYFVRREPP 279 (851)
T ss_pred CCEE-CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH-HHHHHHHCCCCCEEECCCCCC-CCCCEEEEEECCC
T ss_conf 4412-156037889999999999972458996289983124682-889998628721463147888-8787489985685
Q ss_pred -----C---CHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHH----HHHHHCC----CCCCCCCCCCCHHHHHHHHHH
Q ss_conf -----0---002455420010--235641677513023345655----5554226----663010489999999999866
Q gi|254780601|r 228 -----L---SDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFT----KVLAEHL----FQVVALSGELSQQERSNALQM 289 (573)
Q Consensus 228 -----~---~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~----~~L~~~g----~~~~~lhg~~~q~~R~~~~~~ 289 (573)
. .++...+..++. ..+..++|+||+++..|+.++ ..+...+ ..+...+|+|...+|..+...
T Consensus 280 ~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 280 IRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHH
T ss_conf 11332211234577999999999876965999983575678875415788754060103313423366999999999999
Q ss_pred HHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHCCCCCCCCCCEEEEEEC--HHHHHHHHHHHHH
Q ss_conf 5448814998538650014578873389705887-47899986030103788860256405--9999999999998
Q gi|254780601|r 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAERLFRE 362 (573)
Q Consensus 290 fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~-~~~~yvHR~GRtgRag~~G~ai~l~~--~~e~~~~~~i~~~ 362 (573)
|++|++.++++|..+--||||.+++.||++..|. +..+|.+|.||+||.++.+..+.++. +-+..++..-+..
T Consensus 360 ~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~ 435 (851)
T COG1205 360 FKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEEL 435 (851)
T ss_pred HHCCCCCEEEECHHHCCCEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHCCHHH
T ss_conf 7468841786121012265670211453048897028889886110358878753799837884004455083756
No 47
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=100.00 E-value=6e-38 Score=274.38 Aligned_cols=322 Identities=23% Similarity=0.347 Sum_probs=249.1
Q ss_pred HCCCCCCCHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 7879878989999999997599-699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
.-||...-|.|.++|-..|.|+ |.++.-+||-||.|+|-+|.+-. .-..|||+|-+-| +.+++.
T Consensus 6 ~FG~~~Frp~Q~e~I~~~L~g~RD~~vvMpTG~GKSLCYQ~Pa~~~------------~G~t~VIsPLiSL---m~DQV~ 70 (497)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLEGRRDCLVVMPTGGGKSLCYQLPALYS------------DGLTLVISPLISL---MEDQVL 70 (497)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC------------CCCEEEECCHHHH---HHHHHH
T ss_conf 1574445514899999875489756998158986036764056750------------8964997363656---899999
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHH---HH--CCC-CEEEEECCCCHHH------HHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 985446987999988998799999---61--289-7599822310133------21000122464318999613110010
Q gi|254780601|r 96 WLYAKTGVVVAVCIGGVSVHRERR---DL--QNG-AHIVVGTPGRLCD------HIRGKGLNISHLKAVVLDEADEMLDL 163 (573)
Q Consensus 96 ~l~~~~~~~v~~~~gg~~~~~q~~---~l--~~~-~~iiv~TPgrl~d------~~~~~~l~l~~v~~lVlDEaD~ml~~ 163 (573)
.|. ..++....+-+..+-..+.. .+ +.| .-+|--||.++.. .|+ +...-..+-.+++|||--.=..
T Consensus 71 ~L~-~~~i~A~~L~s~~s~~~~~~v~~~~~~k~g~~kllYvtPE~~~~~~~ll~~Le-~~Y~~~~~~~iAvDEAHCiSqW 148 (497)
T TIGR00614 71 QLK-ASGIPATFLNSSQSKEQQKEVLTDLSKKDGKLKLLYVTPEKISKSKSLLQTLE-KLYERKGITLIAVDEAHCISQW 148 (497)
T ss_pred HHH-HCCCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHH-HHHHHCCCEEEEEECEEEECCC
T ss_conf 987-44863010443257789999999987307975899716346534647899999-9886449669998321543588
Q ss_pred H--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HHHH-HCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-----HH
Q ss_conf 0--12357888---75214334225631111222001-1112-101233332333232566520000000000-----02
Q gi|254780601|r 164 G--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALS-----DR 231 (573)
Q Consensus 164 g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~-~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~-----~k 231 (573)
| |+++...+ -..+|.- -.+-.+||=.+.|.+ +.+. -+++|.. .+.+.+. ||+. |.|..+ +-
T Consensus 149 GHDFR~~Y~~LG~Lk~~fP~v-P~~ALTATA~~~~~~Di~~~L~l~~p~~-~~~SFdR--PNl~---y~v~~K~~n~~~~ 221 (497)
T TIGR00614 149 GHDFRPDYKALGSLKQKFPNV-PIMALTATASPSVREDILRILNLKNPQV-FITSFDR--PNLY---YEVRRKTSNTKKI 221 (497)
T ss_pred CCCCCHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHCCCCCCE-EEECCCC--CCCE---EEEECCCCCHHHH
T ss_conf 887407999965788854887-4364340578678999998722136624-6404668--7630---3400578970258
Q ss_pred HHHHHHCCC-------CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEEEECCC
Q ss_conf 455420010-------235641677513023345655555422666301048999999999986654-488149985386
Q gi|254780601|r 232 DNAIVNILR-------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR-DGRARVCIATDV 303 (573)
Q Consensus 232 ~~~l~~ll~-------~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr-~g~~~vLV~TDv 303 (573)
..=|.+++. .++..++||||+||+.+|.++..|.+.|+.|.++|.+|+.++|..+-++|- ..+++|+|||=.
T Consensus 222 ~~dl~~f~~~~~~s~~~~~G~sGIIYC~SR~~~e~~a~~L~~~G~~a~aYHAGl~~~~R~~V~~~f~nrD~~QvVvATvA 301 (497)
T TIGR00614 222 LEDLLRFIVKKASSAWEFKGKSGIIYCPSRKKSEQVAAELQKLGIAAGAYHAGLEISARKEVQHKFQNRDEIQVVVATVA 301 (497)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 99999998752035652458830275287234899999997558610024026886477899998750388579998721
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 50014578873389705887478999860301037888602564059999999999998
Q gi|254780601|r 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362 (573)
Q Consensus 304 aaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~ 362 (573)
...|||-|||..||||++|.++|+|-+-+||+||.|-...|++|+.+.|..+++.+.-.
T Consensus 302 FGMGInKpdvRfViH~~~Pk~~EsYYQE~GRAGRDgl~s~c~lfy~~aD~~~~~~~l~e 360 (497)
T TIGR00614 302 FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECVLFYAPADIARLRRLLVE 360 (497)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHEE
T ss_conf 26888763536788507885621101355556789732010233043569999887400
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.8e-37 Score=267.76 Aligned_cols=335 Identities=21% Similarity=0.236 Sum_probs=230.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCC----CCCCCCCEEEEECCCHHHHHHHHHHHHHHHH------------HCCCEE
Q ss_conf 992898746899999999986104212----2556882799984998999999999999854------------469879
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYA------------KTGVVV 105 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~----~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~------------~~~~~v 105 (573)
+.||||||||+|..||+|.+|...... .....+.++|.|+|.+.|+..|...+..... ..+++|
T Consensus 1 VvAPTGSGKTLAAFL~aLd~L~~~~~~~~~~~~~~~~~~VLYISPLKALa~Dv~rNL~~PL~gI~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 95988743989999999999996145555556788973899959278889999999987998889999862567899758
Q ss_pred EEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECCCCCCCCHHH----HHHHHHHHHCCCCC
Q ss_conf 999889987999996128975998223101332100-0122464318999613110010012----35788875214334
Q gi|254780601|r 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFR----DDIEFILDSSPKKR 180 (573)
Q Consensus 106 ~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~-~~l~l~~v~~lVlDEaD~ml~~gf~----~~i~~i~~~~p~~~ 180 (573)
..-.|.++-.+..+.+++.|||+|+||.-|.=++.. ..-.|.+|+++|+||.-.+..--+- -.++++-..++...
T Consensus 81 ~vRtGDT~~~eR~r~~r~PPdILITTPESL~LlLtsk~r~~L~~v~~VIVDEiHalagsKRGahLaLsLeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 63799999999999850899839848899999873569999779989996286442058839999999999998658999
Q ss_pred CEEEEECCCCCCCHHHHHHHCCC--CCCCCCCCCCCCCCCCCHHCCCCCC----------------------CHHH-HHH
Q ss_conf 22563111122200111121012--3333233323256652000000000----------------------0024-554
Q gi|254780601|r 181 RMLMFSATISPAITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVAL----------------------SDRD-NAI 235 (573)
Q Consensus 181 q~~l~SAT~~~~i~~l~~~~~~~--p~~i~~~~~~~~~~~i~~~~~~v~~----------------------~~k~-~~l 235 (573)
|.+..|||+.+ +... .+||.. |+.|.-...... ..++ +.++. ..-. .+.
T Consensus 161 qRIGLSATv~p-~e~v-A~fLgg~rpv~IV~~~~~k~-~~l~---v~vPv~d~~~~~~~~~~~g~~~~~~~~~siw~~v~ 234 (1490)
T PRK09751 161 QRIGLSATVRS-ASDV-AAFLGGDRPVTVVNPPAMRH-PQIR---IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CEEEEECCCCC-HHHH-HHHHCCCCCEEEECCCCCCC-CEEE---EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 68999776689-9999-98737999837868888887-5279---97046653333323567763223555453167889
Q ss_pred HHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHC------------------------------CC---CCCCCCCCCCHH
Q ss_conf 20010-235641677513023345655555422------------------------------66---630104899999
Q gi|254780601|r 236 VNILR-YHGAKNAIVFCSTRASVSRFTKVLAEH------------------------------LF---QVVALSGELSQQ 281 (573)
Q Consensus 236 ~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~------------------------------g~---~~~~lhg~~~q~ 281 (573)
.++++ .....++||||||+..+|.++..|++. |. -+.+.||.++.+
T Consensus 235 ~~i~~~i~~hrsTLVF~NTR~~AErl~~~L~el~~erl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ia~aHHGSlSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99999997268769997887999999999999999873246432211000011122221123566543344555768999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCC-CCCCCCEEEEEECH-HHHHHHHHH
Q ss_conf 9999986654488149985386500145788733897058874789998603010-37888602564059-999999999
Q gi|254780601|r 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG-RAGRKGMSVFVIPQ-NMQRRAERL 359 (573)
Q Consensus 282 ~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg-Rag~~G~ai~l~~~-~e~~~~~~i 359 (573)
+|..+.+.+|+|+++.+|||.-+.-||||..|+.||++..|.++.+.+||+||.| +-|.....+.|-.. .|.-....+
T Consensus 315 ~R~~vE~~LK~G~LraVVaTSSLELGIDiG~VDlVVQvgsP~sVAs~lQRvGRAGH~vg~~S~g~~~p~~r~dlle~av~ 394 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVI 394 (1490)
T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 99999999867997789977805407764465579980696678899997101257889844079962877899999999
Q ss_pred -HHHHHCCCCCCCCCC-HHHHHHHH
Q ss_conf -998506641056899-99988889
Q gi|254780601|r 360 -FREANVSVVWEPAPS-VEAIRERD 382 (573)
Q Consensus 360 -~~~~~~~~~~~~~Ps-~eeI~~~~ 382 (573)
+....-.++...+|. .=||...+
T Consensus 395 ~~~~~~G~iE~~~~p~npLDVLAQq 419 (1490)
T PRK09751 395 VECMFAGRLENLTPPHNPLDVLAQQ 419 (1490)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999829988778898559999999
No 49
>KOG0351 consensus
Probab=100.00 E-value=1.7e-34 Score=251.11 Aligned_cols=332 Identities=21% Similarity=0.268 Sum_probs=255.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 89999999787987898999999999759969999289874689999999998610421225568827999849989999
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~ 88 (573)
+.........|+...-|-|.++|-..|.|+|+.+..+||.||.++|-||.+- . ....||+.|-.-|
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--~----------~gitvVISPL~SL-- 316 (941)
T KOG0351 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--L----------GGVTVVISPLISL-- 316 (941)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCC--C----------CCCEEEECCHHHH--
T ss_conf 8899999986435588439999999974884699953488625676666101--3----------8936996338999--
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHH---HHCC---CCEEEEECCCCHHH--HHHCCCCCCCC---CEEEEEECC
Q ss_conf 9999999985446987999988998799999---6128---97599822310133--21000122464---318999613
Q gi|254780601|r 89 QVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DLQN---GAHIVVGTPGRLCD--HIRGKGLNISH---LKAVVLDEA 157 (573)
Q Consensus 89 Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~---~l~~---~~~iiv~TPgrl~d--~~~~~~l~l~~---v~~lVlDEa 157 (573)
+.+++..| ...++....+.+++....+.. .|.+ .++|+--||..+.. .+.+...+|.. +-.+|+|||
T Consensus 317 -m~DQv~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351 317 -MQDQVTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred -HHHHHHHH-HHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCCCHHHHHHHCCCCCEEEEEEECHH
T ss_conf -99999743-2148541323565668889999999857887678999677886333215667875067870488872278
Q ss_pred CCCCCCH--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HHHH-HCCCCCCCCCCCCCCCCCCCCHHCCCCCCCH
Q ss_conf 1100100--12357888---75214334225631111222001-1112-1012333323332325665200000000000
Q gi|254780601|r 158 DEMLDLG--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSD 230 (573)
Q Consensus 158 D~ml~~g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~~~-~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~ 230 (573)
--....| |+++..++ ....|. .-++-.+||-...|.. ++.. -+.+|..+.. +.+. +| .+|.|..+.
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-sfnR--~N---L~yeV~~k~ 467 (941)
T KOG0351 395 HCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFKS-SFNR--PN---LKYEVSPKT 467 (941)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCC-CCEEEEEHHCCHHHHHHHHHHHCCCCCCEECC-CCCC--CC---CEEEEEECC
T ss_conf 87664223334778999999852789-97687530020889999999827888632225-6799--88---559998566
Q ss_pred -HHH---HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf -245---5420010235641677513023345655555422666301048999999999986654488149985386500
Q gi|254780601|r 231 -RDN---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 (573)
Q Consensus 231 -k~~---~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaR 306 (573)
+.. .+..+-..+....+||||.++.+|+.++..|...|+++..+|++|+..+|..+..+|-.++++|.|||=....
T Consensus 468 ~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGM 547 (941)
T KOG0351 468 DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGM 547 (941)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 75316889887651289998379968823199999999873520575526788788899999985688708999852247
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 145788733897058874789998603010378886025640599999999999985
Q gi|254780601|r 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363 (573)
Q Consensus 307 GiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~ 363 (573)
|||.+||..||||.+|.+.|.|.+-+||.||.|..-.|++|+...+...++.+...-
T Consensus 548 GIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351 548 GIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf 877786359997778614788887403367678800267742613789999998726
No 50
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=100.00 E-value=6.5e-35 Score=253.99 Aligned_cols=166 Identities=46% Similarity=0.644 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999999999759969999289874689999999998610421225568827999849989999999999998544698
Q gi|254780601|r 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103 (573)
Q Consensus 24 t~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~ 103 (573)
||+|+++|+.+++|+|++++++||||||++|.+|++..+.... .++++|+++||++|+.|+++.++++....++
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~------~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~ 74 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNP------DGPQALVLAPTRELAEQIYEELKKLGKYLGL 74 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9459999999976997899889997589999999999987477------8987999906088888999886432102676
Q ss_pred EEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 79999889987999996128975998223101332100012246431899961311001001235788875214334225
Q gi|254780601|r 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 (573)
Q Consensus 104 ~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~ 183 (573)
++..++||.+...+...+.+++||+|+||+++..++.++...+++++++|+||||.|.+.+|...++.|++.+|...|++
T Consensus 75 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~~g~~~~~il~~l~~~~q~v 154 (167)
T pfam00270 75 KVALLYGGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPKRQIL 154 (167)
T ss_pred CEEEECCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 40464178617889876405770799478999999980331211003899880886733582999999998579999789
Q ss_pred EEECCCCCCCHH
Q ss_conf 631111222001
Q gi|254780601|r 184 MFSATISPAITT 195 (573)
Q Consensus 184 l~SAT~~~~i~~ 195 (573)
++|||+|+.+++
T Consensus 155 ~~SAT~~~~~~~ 166 (167)
T pfam00270 155 LLSATLPRNVED 166 (167)
T ss_pred EEECCCCHHHHH
T ss_conf 997269977854
No 51
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=251.65 Aligned_cols=333 Identities=23% Similarity=0.290 Sum_probs=253.8
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9988999999978798789899999999-975996999928987468999999999861042122556882799984998
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
++|+.+.+-|+..||++++|||..|+.. +|+|.|+++.|.|+|||||-=-|.-+.+++.... .-|.|+|--
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--------KmlfLvPLV 271 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--------KMLFLVPLV 271 (830)
T ss_pred CCCHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCHHHHHCCC--------EEEEEEHHH
T ss_conf 875999999986386443023465566144057734999405777514777637387883787--------289973168
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH----CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 9999999999998544698799998899879999961----289759982231013321000122464318999613110
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l----~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
.||.|-|++|+.-+..++++++.-+|-.-+...-.-. ...+||||||=.-+ ||+-|..-++.+|-++|+||...+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HHHCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCEEEEECHHH-HHHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 7631118999998650166278884234522467753568998776798611107-899870785554435996501204
Q ss_pred CC--CHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 01--0012--3578887521433422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r 161 LD--LGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 161 l~--~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
=| -|-+ .-|.++ +.+-++.|.+-.|||+.++ ..+++++--+++ ..+...+|--.|..+.-...+|.+.+.
T Consensus 351 ~deERG~RLdGLI~RL-r~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV----~y~~RPVplErHlvf~~~e~eK~~ii~ 424 (830)
T COG1202 351 EDEERGPRLDGLIGRL-RYLFPGAQFIYLSATVGNP-EELAKKLGAKLV----LYDERPVPLERHLVFARNESEKWDIIA 424 (830)
T ss_pred CCHHCCCCHHHHHHHH-HHHCCCCEEEEEEEECCCH-HHHHHHHCCEEE----EECCCCCCHHHEEEEECCCHHHHHHHH
T ss_conf 4010163235289999-9867777499987433886-999988387258----655887873670664048167778999
Q ss_pred HCCCCC--------CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 001023--------564167751302334565555542266630104899999999998665448814998538650014
Q gi|254780601|r 237 NILRYH--------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 (573)
Q Consensus 237 ~ll~~~--------~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGi 308 (573)
+|.+.+ -..++|||+|+++.|++++.+|..+|+++.++|++|++.+|..+-..|-++.+.+.|+|-.+|-|.
T Consensus 425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGV 504 (830)
T COG1202 425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGV 504 (830)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCC
T ss_conf 99999975441137677369994216669999988610786665443798678888899997608755576424564478
Q ss_pred CCCCCCEEEEECCC-----CCHHHHHHHHCCCCCCCC--CCEEEEEECHHHHH
Q ss_conf 57887338970588-----747899986030103788--86025640599999
Q gi|254780601|r 309 DLPDLELVIHAELS-----SNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQR 354 (573)
Q Consensus 309 Di~~v~~Vin~d~P-----~~~~~yvHR~GRtgRag~--~G~ai~l~~~~e~~ 354 (573)
|||. +.||-=.+. -++..|.+=.||+||-+- .|+.++++.|....
T Consensus 505 DFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y 556 (830)
T COG1202 505 DFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY 556 (830)
T ss_pred CCCH-HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 8751-899999987104327899999985046998723373399995577011
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-31 Score=229.73 Aligned_cols=320 Identities=21% Similarity=0.306 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78989999999997599699992898746899999999986104212255688279998499899999999999985446
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~ 101 (573)
+|-.-|.......|.+ ++++..|||-|||.--++-+...+.... + .+|+|+||+-|+.|.++.+.+...-.
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-------~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-------G-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred CHHHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCC-------C-EEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 5889999999998644-8389952875079999999999987458-------8-48996589517999999999985898
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCC-CCHHH--------------
Q ss_conf 987999988998799999612897599822310133210001224643189996131100-10012--------------
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML-DLGFR-------------- 166 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml-~~gf~-------------- 166 (573)
.-.++.+.|-.+-.+-. .+=....|+|+||.-+..-|..|.+++..+.++|+|||-+-- +-.|.
T Consensus 86 ~~~i~~ltGev~p~~R~-~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 86 EDEIAALTGEVRPEERE-ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred HHHEEEECCCCCHHHHH-HHHHHCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 43323111777868899-98751778995638777687617667678058986235541376069999999998256843
Q ss_pred ------------HHHHHHHHHCCCC------------------CCEEEEECCCCCCCHHHHHHH----------CCCCCC
Q ss_conf ------------3578887521433------------------422563111122200111121----------012333
Q gi|254780601|r 167 ------------DDIEFILDSSPKK------------------RRMLMFSATISPAITTLAKNY----------QKDAVR 206 (573)
Q Consensus 167 ------------~~i~~i~~~~p~~------------------~q~~l~SAT~~~~i~~l~~~~----------~~~p~~ 206 (573)
+.|..+++++.-. ...-++--++|.++.++-+.+ +++--.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 79872389998799999998379542898457885177751404248996368589999999999999999999997695
Q ss_pred CCCCC------------------CCC------------------------CCCCCCHHCCCC------------------
Q ss_conf 32333------------------232------------------------566520000000------------------
Q gi|254780601|r 207 VNIAS------------------ENR------------------------QHSDIDYRAVLV------------------ 226 (573)
Q Consensus 207 i~~~~------------------~~~------------------------~~~~i~~~~~~v------------------ 226 (573)
+...+ .+. ....|..+|-++
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 32357310768999999899863576178889999999998888999999850869999999999987503520778987
Q ss_pred ----------------C----CCHHHHHHHHCC----CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC-CC-------
Q ss_conf ----------------0----000245542001----023564167751302334565555542266630-10-------
Q gi|254780601|r 227 ----------------A----LSDRDNAIVNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-AL------- 274 (573)
Q Consensus 227 ----------------~----~~~k~~~l~~ll----~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~-~l------- 274 (573)
. ..-|++.+..++ +.....++|||++.+..++.++.+|...|.++. -+
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 53820479999999740036889618999999999972389855999961475899999999852875206886114545
Q ss_pred -CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf -489999999999866544881499853865001457887338970588747899986030103788860256405999
Q gi|254780601|r 275 -SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 275 -hg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
..+|+|.+...++++||+|.++|||||.|+.-|||||+||+||-||.-.+.--+|+|.|||||- ++|..+.|++...
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCC-CCCEEEEEEECCC
T ss_conf 56665888999999998657851899812322467887656799956885788999860744557-7974999996586
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=230.44 Aligned_cols=327 Identities=25% Similarity=0.301 Sum_probs=232.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 988999999978798789899999999-9759969999289874689999999998610421225568827999849989
Q gi|254780601|r 7 IPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 7 l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
+++.+.+-++..|+.+..|-|+.++.. +..|+|++++||||||||+-..+.+++.+.... -.++.+||+|.
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~--------~k~vYivPlkA 87 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG--------GKVVYIVPLKA 87 (766)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CCEEEEECHHH
T ss_conf 2078998860488477557899874111257986799767888669999999999998559--------83899907599
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 99999999999854469879999889987999996128975998223101332100012246431899961311001001
Q gi|254780601|r 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165 (573)
Q Consensus 86 La~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf 165 (573)
||.|++++++++. ..|++|....|..+...+. | .+++|||+||.++--++.....-...|+.+|+||+-.+-|--=
T Consensus 88 La~Ek~~~~~~~~-~~GirV~~~TgD~~~~~~~--l-~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFSRLE-ELGIRVGISTGDYDLDDER--L-ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHHHHHH-HCCCEEEEECCCCCCCHHH--H-CCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCC
T ss_conf 9999999866688-6597799964886555334--1-4588799746786676506753334016899942101487565
Q ss_pred HHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHHHHCC-CCCCCCCCC--CCCCCCCCCHHCCCCCCCH-------HH
Q ss_conf 235788875214---3342256311112220011112101-233332333--2325665200000000000-------24
Q gi|254780601|r 166 RDDIEFILDSSP---KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS--ENRQHSDIDYRAVLVALSD-------RD 232 (573)
Q Consensus 166 ~~~i~~i~~~~p---~~~q~~l~SAT~~~~i~~l~~~~~~-~p~~i~~~~--~~~~~~~i~~~~~~v~~~~-------k~ 232 (573)
-.-++.|...++ ...|.+-.|||+|+. .+++. |++ ++.....-. .....+. .+.++...... ..
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~-wL~a~~~~~~~rp~~l~~~v~~-~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNA-EEVAD-WLNAKLVESDWRPVPLRRGVPY-VGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred CCEEHHHHHHHHHHCCCEEEEEEEEECCCH-HHHHH-HHCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCHH
T ss_conf 864022798888527551798873116888-99999-8588355567788620157765-31798714764345421057
Q ss_pred HHHHHCCCC-CCCCEEEEECCCHHHHHHHHHHHHH--------C-------C---CC-------------------CCCC
Q ss_conf 554200102-3564167751302334565555542--------2-------6---66-------------------3010
Q gi|254780601|r 233 NAIVNILRY-HGAKNAIVFCSTRASVSRFTKVLAE--------H-------L---FQ-------------------VVAL 274 (573)
Q Consensus 233 ~~l~~ll~~-~~~~~~ivF~~t~~~~~~l~~~L~~--------~-------g---~~-------------------~~~l 274 (573)
..+..+++. .+..+++|||+|++.+...+..|.. . + +. +...
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999985698699997457259999999999875127716543012234421123554322178999997275411
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE----EEC-----CCCCHHHHHHHHCCCCCCCC--CCE
Q ss_conf 4899999999998665448814998538650014578873389----705-----88747899986030103788--860
Q gi|254780601|r 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI----HAE-----LSSNPENLLHRSGRTGRAGR--KGM 343 (573)
Q Consensus 275 hg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi----n~d-----~P~~~~~yvHR~GRtgRag~--~G~ 343 (573)
|.+|+.++|..+-+.||.|.++|||||--.|.|.+.|.=..|| -|| .+-++-+|++=.||+||-|- -|.
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 26897889999999986698549995457762168863289991038775778847776414865567679987577782
Q ss_pred EEEEE
Q ss_conf 25640
Q gi|254780601|r 344 SVFVI 348 (573)
Q Consensus 344 ai~l~ 348 (573)
++.+.
T Consensus 401 ~~i~~ 405 (766)
T COG1204 401 AIILA 405 (766)
T ss_pred EEEEE
T ss_conf 79993
No 54
>KOG0354 consensus
Probab=100.00 E-value=3.6e-30 Score=222.06 Aligned_cols=328 Identities=24% Similarity=0.328 Sum_probs=211.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 79878989999999997599699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
..-.+-.-|.....+.| |+++|+.+|||+|||..-+.-+.+++..-.. -.+++++||+-|..|-...+..++
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-------~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-------GKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CCCCCCHHHHHHHHHHH-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-------CEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 76656078999867862-6876999535998610479999999723776-------438996077117888898876206
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCC-CCCCEEEEEECCCCCCCC-HHHHHHHHHHHHC
Q ss_conf 44698799998899879999961289759982231013321000122-464318999613110010-0123578887521
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDL-GFRDDIEFILDSS 176 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~-l~~v~~lVlDEaD~ml~~-gf~~~i~~i~~~~ 176 (573)
.. -.+....||..-..-...+-...+|++.||.-|.+.|..+... |+.+.++|+|||-+-... -|..-+...+..-
T Consensus 131 ~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354 131 IP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred CC--CCCEEECCCCCCCCCHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 76--0104550575688762453102635896727634332543345455179999722244555661799999999865
Q ss_pred CCCCCEEEEECCCCCCCHH-------H-------------------------------------------HHHHCCCC--
Q ss_conf 4334225631111222001-------1-------------------------------------------11210123--
Q gi|254780601|r 177 PKKRRMLMFSATISPAITT-------L-------------------------------------------AKNYQKDA-- 204 (573)
Q Consensus 177 p~~~q~~l~SAT~~~~i~~-------l-------------------------------------------~~~~~~~p-- 204 (573)
....|.+-.+||....... | .+.||..-
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14661799855888458999999985203325550445654189872467524758876411343699999999999986
Q ss_pred -CCCCCCC------------CCCCCCCC--CHH--CC-------------------------------------------
Q ss_conf -3332333------------23256652--000--00-------------------------------------------
Q gi|254780601|r 205 -VRVNIAS------------ENRQHSDI--DYR--AV------------------------------------------- 224 (573)
Q Consensus 205 -~~i~~~~------------~~~~~~~i--~~~--~~------------------------------------------- 224 (573)
..+.+.. .....++. .|. ++
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 38541024333444404330022236887432036789999987888876323403777765554300000467889874
Q ss_pred -------------------CCC--CCHHHHHHHHCC----CCCCCCEEEEECCCHHHHHHHHHHHHH---CCCCCCCCCC
Q ss_conf -------------------000--000245542001----023564167751302334565555542---2666301048
Q gi|254780601|r 225 -------------------LVA--LSDRDNAIVNIL----RYHGAKNAIVFCSTRASVSRFTKVLAE---HLFQVVALSG 276 (573)
Q Consensus 225 -------------------~v~--~~~k~~~l~~ll----~~~~~~~~ivF~~t~~~~~~l~~~L~~---~g~~~~~lhg 276 (573)
... +..|++-|..++ +..+..++||||+||..|+.|..+|.. .|+++..+-|
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 22106778898876443202787668469999999999860598850799973288999999999754013544021560
Q ss_pred --------CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf --------999999999986654488149985386500145788733897058874789998603010378886025640
Q gi|254780601|r 277 --------ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 (573)
Q Consensus 277 --------~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~ 348 (573)
+|+|.+...++++|++|.++|||||.|+..||||+++++||-||.-.++-..|+|.|| ||| +.|.++.++
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~ 526 (746)
T KOG0354 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLT 526 (746)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCEEEEECCCCCHHHHHHHHCC-CCC-CCCEEEEEE
T ss_conf 354454444578999999999857980279981010046774211289996577668899998631-010-187699997
Q ss_pred CHHHHHHHHH
Q ss_conf 5999999999
Q gi|254780601|r 349 PQNMQRRAER 358 (573)
Q Consensus 349 ~~~e~~~~~~ 358 (573)
+..+....+.
T Consensus 527 t~~~~~~~E~ 536 (746)
T KOG0354 527 TGSEVIEFER 536 (746)
T ss_pred CCHHHHHHHH
T ss_conf 2516889988
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.6e-29 Score=213.58 Aligned_cols=328 Identities=24% Similarity=0.332 Sum_probs=226.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 89999999787987898999999999759------969999289874689999999998610421225568827999849
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLRE------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P 82 (573)
..+..-++.+.|+ +|+=|..||..|... -+-++|.--|||||+-.++.++.-+. .+-|+.+++|
T Consensus 245 ~~~~~~~~~LPF~-LT~~Q~~~~~ei~~dl~~~~~m~rllqGDVGsGKT~va~~a~~~~~~---------~g~q~a~maP 314 (677)
T PRK10917 245 ELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALMAP 314 (677)
T ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH---------HCCEEEEECC
T ss_conf 9999999809998-89889999999998765995427773287678889999999999998---------1994899876
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH---HHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 9899999999999985446987999988998799999---61289-7599822310133210001224643189996131
Q gi|254780601|r 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 83 TrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~---~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
|--||.|.++.+.++....++++..+.|+++...... .|+.| ++|||||-. +-+..+.+.++..+|+||=-
T Consensus 315 TeiLa~Qh~~~~~~~~~~~~i~v~lltg~~~~~~~~~~~~~~~~g~~~i~iGTHa-----l~~~~v~f~~LglvviDEQH 389 (677)
T PRK10917 315 TEILAEQHYRNLKKWLEPLGIRVALLTGSLKGKERREILEALASGEADIVIGTHA-----LIQDDVEFHNLGLVIIDEQH 389 (677)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEHHH-----HHHCCCCCCCCCEEEECHHH
T ss_conf 7999999999999877634988998407741778999999985799778973078-----77355644666569953057
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 100100123578887521433422563111122200111121012--333323332325665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~--p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
+ |-=.=..-|..-......+.+|||=-|. .|+-.+..+ --.|...+... ..|+-++ +...++..+..
T Consensus 390 r-----FGV~QR~~l~~k~~~~~~L~mtATPIPR--tla~~~~g~~d~s~i~~~P~~r--~~i~T~~--~~~~~~~~~~~ 458 (677)
T PRK10917 390 R-----FGVHQRLALREKGENPHVLVMTATPIPR--TLAMTAYGDLDVSVIDELPPGR--KPITTVV--IPDSRRDEVYE 458 (677)
T ss_pred H-----HHHHHHHHHHHCCCCCEEEEEECCCCHH--HHHHHHHCCCCEEECCCCCCCC--CCCEEEE--ECHHHHHHHHH
T ss_conf 7-----6399999998439997299983688438--8999873576666667799999--8726999--76256899999
Q ss_pred HCC-CCCCCCEEEEECCCH--------HHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 001-023564167751302--------3345655555422--66630104899999999998665448814998538650
Q gi|254780601|r 237 NIL-RYHGAKNAIVFCSTR--------ASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305 (573)
Q Consensus 237 ~ll-~~~~~~~~ivF~~t~--------~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaa 305 (573)
.+. +.....++.|-|.-. ..+++.++.|.+. ++++..+||.|+..+.+.+|++|++|+++|||||.|..
T Consensus 459 ~i~~~~~~g~q~y~v~p~ieese~~~~~~~~~~~~~l~~~~~~~~v~~~hG~m~~~ek~~~m~~F~~g~~~iLvsTtviE 538 (677)
T PRK10917 459 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQKALPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 538 (677)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCEEE
T ss_conf 99999975992899941311233201777999999998448997599830789878999999999839999999898975
Q ss_pred CCCCCCCCCEEEEECCCCC-HHHHHHHHCCCCCCCCCCEEEEEEC----HHHHHHHHHHHHH
Q ss_conf 0145788733897058874-7899986030103788860256405----9999999999998
Q gi|254780601|r 306 RGIDLPDLELVIHAELSSN-PENLLHRSGRTGRAGRKGMSVFVIP----QNMQRRAERLFRE 362 (573)
Q Consensus 306 RGiDi~~v~~Vin~d~P~~-~~~yvHR~GRtgRag~~G~ai~l~~----~~e~~~~~~i~~~ 362 (573)
-|+|||+.++.|-++.-.= ....-+==||.||.+.+|.|++++. +....+++.+++.
T Consensus 539 vGvdvpna~~mvi~~aerfGlsqLhQLRGRVgRg~~~~~c~l~~~~~~~~~~~~Rl~~~~~~ 600 (677)
T PRK10917 539 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRET 600 (677)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 58678888589997701053678877427436788845899983899997899999999985
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.97 E-value=1.4e-28 Score=211.30 Aligned_cols=326 Identities=21% Similarity=0.334 Sum_probs=221.1
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHHHHCC--C----CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 89999999-787987898999999999759--9----6999928987468999999999861042122556882799984
Q gi|254780601|r 9 QVIGEALS-ERGYVNLTSVQEAILNPDLRE--K----DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 9 ~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g--~----d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
+.+.+.++ .+=|. ||.=|+.+|.-|++. + +=++|.-=|||||+-=+|.++.-|. .+-||..|+
T Consensus 294 ~~l~k~~~~~LPF~-LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~---------~GYQ~ALMA 363 (721)
T TIGR00643 294 ELLEKFLAKSLPFE-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---------SGYQVALMA 363 (721)
T ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------CCCEEEEEC
T ss_conf 79999998528887-76778999999998614787532221101066389999999999984---------698099917
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 99899999999999985446987999988998799---99961289-759982231013321000122464318999613
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~---q~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
||-=||.|.|+.+.++....+++|+.+.|+.--.. ....|..| +++||||=. |-+..+.++++.++|+||=
T Consensus 364 PTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHA-----Liqe~vef~~L~lVIiDEQ 438 (721)
T TIGR00643 364 PTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHA-----LIQEKVEFKRLGLVIIDEQ 438 (721)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHH-----HHHHHHHHHCCCEEEEECC
T ss_conf 76899999999999962354857888615667878999999986395205733135-----5452144314774899323
Q ss_pred CC--------CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHCCCCC
Q ss_conf 11--------00100123578887521433422563111122200111121012333323332325665--200000000
Q gi|254780601|r 158 DE--------MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVA 227 (573)
Q Consensus 158 D~--------ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~--i~~~~~~v~ 227 (573)
-+ |.++|-...+ .......+++|||==|....|+ ...|= -|++- ++..... |.-+ .+.
T Consensus 439 HRFGV~QR~~L~~KG~~~~~------~G~~PH~L~MtATPIPRTLALt--~yGDl-d~S~I-~elP~GR~pi~T~--~~~ 506 (721)
T TIGR00643 439 HRFGVEQRKKLREKGQEGSM------IGFAPHVLVMTATPIPRTLALT--VYGDL-DVSII-DELPPGRKPITTY--LIK 506 (721)
T ss_pred CCCHHHHHHHHHHHHHCCCC------CCCCCCEEEEECCCCHHHHHHH--HHHCC-EEEEE-CCCCCCCCEEEEE--EEE
T ss_conf 35607899999986220688------6777776466378814789977--65000-03343-1685459338998--884
Q ss_pred CCHH---HHHHHHCC--CCCCCCEEEEECCCH---------HHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0002---45542001--023564167751302---------3345655555422---66630104899999999998665
Q gi|254780601|r 228 LSDR---DNAIVNIL--RYHGAKNAIVFCSTR---------ASVSRFTKVLAEH---LFQVVALSGELSQQERSNALQMM 290 (573)
Q Consensus 228 ~~~k---~~~l~~ll--~~~~~~~~ivF~~t~---------~~~~~l~~~L~~~---g~~~~~lhg~~~q~~R~~~~~~f 290 (573)
..++ .+-+..++ +..+..++.|-|.-. +.|..+++.|... .+++.-|||.|+..+.+++|+.|
T Consensus 507 ~~~~~aW~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F 586 (721)
T TIGR00643 507 HKEKGAWIDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEF 586 (721)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 27887756899999999983289089996440320047168999999999888612210011330689847899999985
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHH-HHCCCCCCCCCCEEEEEE-----CH---HHHHHHHHHHH
Q ss_conf 4488149985386500145788733897058874789998-603010378886025640-----59---99999999999
Q gi|254780601|r 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH-RSGRTGRAGRKGMSVFVI-----PQ---NMQRRAERLFR 361 (573)
Q Consensus 291 r~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvH-R~GRtgRag~~G~ai~l~-----~~---~e~~~~~~i~~ 361 (573)
|+++++|||||.|..=|+||||-+..|-+|.=.==-+=+| ==||.||...++.|++.+ .| ....+++.+.+
T Consensus 587 ~~~~~~ILVsTTVIEVGVDVPnAtvMVIe~AeRFGLSQLHQLRGRVGRG~~~SyC~L~~kdei~~p~~~~~~~RL~~~~~ 666 (721)
T TIGR00643 587 REGEVDILVSTTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKDEIKNPKSESAKKRLRVMAE 666 (721)
T ss_pred HHCCCEEEEEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 21583699997689998617977278886655103688876350012689750799812532578886468999999851
No 57
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.6e-29 Score=217.76 Aligned_cols=287 Identities=16% Similarity=0.217 Sum_probs=177.7
Q ss_pred HHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC---
Q ss_conf 9999999975996--99992898746899999999986104212255688279998499899999999999985446---
Q gi|254780601|r 27 QEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--- 101 (573)
Q Consensus 27 Q~~~ip~~l~g~d--~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~--- 101 (573)
|..++..+.+|.+ +++.||||||||+||.||+++. ...+|++.||+.|+.++++.++.+....
T Consensus 2 q~~~~~~~~~~~~~~ivitAPTgsGKT~Aa~lp~l~~------------~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~ 69 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC------------CCCEEEECCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6899999976899869998999856999999999738------------9879997778999999999999999874423
Q ss_pred -CCEEEEEECCCCHH-------------------H-HHHHHCCCCEEEEECCCCHHHHHH-----CCC---CCCCCCEEE
Q ss_conf -98799998899879-------------------9-999612897599822310133210-----001---224643189
Q gi|254780601|r 102 -GVVVAVCIGGVSVH-------------------R-ERRDLQNGAHIVVGTPGRLCDHIR-----GKG---LNISHLKAV 152 (573)
Q Consensus 102 -~~~v~~~~gg~~~~-------------------~-q~~~l~~~~~iiv~TPgrl~d~~~-----~~~---l~l~~v~~l 152 (573)
.+.+..+.|....+ . .....++.|+|+++||.-+.-++. ++. -.+++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~V 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEE
T ss_conf 46440211464323344465555343445410256654302589909992889999997620136510399998516747
Q ss_pred EEECCCCCCCCHHHHH----HHH--HHHHCCCCCCEEEEECCCCCCCHHHHHHHC--CCCCC------------CCCCCC
Q ss_conf 9961311001001235----788--875214334225631111222001111210--12333------------323332
Q gi|254780601|r 153 VLDEADEMLDLGFRDD----IEF--ILDSSPKKRRMLMFSATISPAITTLAKNYQ--KDAVR------------VNIASE 212 (573)
Q Consensus 153 VlDEaD~ml~~gf~~~----i~~--i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~--~~p~~------------i~~~~~ 212 (573)
|+||+- +++-.+... +.. .........+.++.|||.++.+.......- ..+.. ..+...
T Consensus 150 ViDEiH-~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFH-LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEEEH-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 756200-0067620899999999999863368980899827998035789863234576434565444456787433345
Q ss_pred C------CCCCCCCHHCCCCCCCHHHHH-------HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCCCCC
Q ss_conf 3------256652000000000002455-------420010235641677513023345655555422--6663010489
Q gi|254780601|r 213 N------RQHSDIDYRAVLVALSDRDNA-------IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGE 277 (573)
Q Consensus 213 ~------~~~~~i~~~~~~v~~~~k~~~-------l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~lhg~ 277 (573)
. ...+.++-.+. ....-+... +...+......+++||||+...++++++.|... |..+..+||.
T Consensus 229 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELI-PAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred CCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCC
T ss_conf 543455444675011234-6630446799999999999999852671799955899999999999863364114554255
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 99999999986654488149985386500145788733897058874789998603010
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg 336 (573)
....+|+ +.++.+++|||..+.-|||| +++.||- -|.++.++++|+||+|
T Consensus 308 ~~~~~re------k~~~~~~vVaTsaLElGIDi-~~d~~i~--~~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 308 APKKDRE------RAMQFDILLGTSTVDVGVDF-KRDWLIF--SARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHH------CCCCCCEEEECCCCEEEEEC-CCCEEEE--CCCCHHHHHHCCCCCC
T ss_conf 6188985------04899999987701035611-7898995--8987888997266799
No 58
>KOG0352 consensus
Probab=99.97 E-value=1e-29 Score=218.96 Aligned_cols=330 Identities=23% Similarity=0.291 Sum_probs=235.8
Q ss_pred HHHHHHHHH-CCCCC-CCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 899999997-87987-898999999999759-969999289874689999999998610421225568827999849989
Q gi|254780601|r 9 QVIGEALSE-RGYVN-LTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 9 ~~l~~~l~~-~g~~~-pt~iQ~~~ip~~l~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
..+.++|++ .|+.+ -|+.|++++-.+..+ +||.+..|||+||.|+|-||.|-.= + ..||+.|--.
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~-----------g-ITIV~SPLiA 72 (641)
T KOG0352 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG-----------G-ITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCHHHHHC-----------C-EEEEECHHHH
T ss_conf 799999999708301037578998999883467379964688760145426587728-----------8-1899307899
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH---HHC---CCCEEEEECCCCHH-----HHHHCCCCCCCCCEEEEE
Q ss_conf 9999999999985446987999988998799999---612---89759982231013-----321000122464318999
Q gi|254780601|r 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DLQ---NGAHIVVGTPGRLC-----DHIRGKGLNISHLKAVVL 154 (573)
Q Consensus 86 La~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~---~l~---~~~~iiv~TPgrl~-----d~~~~~~l~l~~v~~lVl 154 (573)
| |.+++..|. .+.+.+.++-.-.|..+..+ .|+ -...++.-||.--. ++++ +..+-+.+.|+|+
T Consensus 73 L---IkDQiDHL~-~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vV 147 (641)
T KOG0352 73 L---IKDQIDHLK-RLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVV 147 (641)
T ss_pred H---HHHHHHHHH-HHCCCHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH-HHHHHCEEEEEEE
T ss_conf 9---999987787-4056166640121078899998888743775148997631555666899999-8874140224773
Q ss_pred ECCCCCCCCH--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HH-HHHCCCCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 6131100100--12357888---75214334225631111222001-11-121012333323332325665200000000
Q gi|254780601|r 155 DEADEMLDLG--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LA-KNYQKDAVRVNIASENRQHSDIDYRAVLVA 227 (573)
Q Consensus 155 DEaD~ml~~g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~-~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~ 227 (573)
|||.-.--.| |++|.-.+ -..+| ..-.+...||-.++|.+ +. ...|++|+-|--.+.-. ...||.+.
T Consensus 148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR-----~NLFYD~~ 221 (641)
T KOG0352 148 DEAHCVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR-----DNLFYDNH 221 (641)
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCHH-----HHHHHHHH
T ss_conf 3466677626666820444666774469-99669854346776779999997605854440574145-----44457888
Q ss_pred C----CHHHHHHHHC----CC-------CCCC--CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0----0024554200----10-------2356--4167751302334565555542266630104899999999998665
Q gi|254780601|r 228 L----SDRDNAIVNI----LR-------YHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290 (573)
Q Consensus 228 ~----~~k~~~l~~l----l~-------~~~~--~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~f 290 (573)
. .|-+..|..+ |- ..++ .-+||||+|+..|+.++--|...|+.+.++|.++...+|+.+-+++
T Consensus 222 ~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~W 301 (641)
T KOG0352 222 MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKW 301 (641)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 88764137778999999862890444117877777327996028899989887532476267765001411268899998
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 44881499853865001457887338970588747899986030103788860256405999999999999
Q gi|254780601|r 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 291 r~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~ 361 (573)
-++++.|++||.-...|.|-|+|.+||||++|.+...|.+.+||.||.|+...|-++|+.+|...+..+.+
T Consensus 302 M~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352 302 MNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred HCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 62788779996024446687761599951705657899886153566777252013332140577779977
No 59
>KOG0952 consensus
Probab=99.96 E-value=5.3e-27 Score=200.74 Aligned_cols=330 Identities=19% Similarity=0.268 Sum_probs=229.0
Q ss_pred HHHCCCCCCCHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9978798789899999999975-9969999289874689999999998610421225-5688279998499899999999
Q gi|254780601|r 15 LSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PASAPLALAIAPTRELAVQVGR 92 (573)
Q Consensus 15 l~~~g~~~pt~iQ~~~ip~~l~-g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~-~~~~~~~lil~PTrELa~Qv~~ 92 (573)
..-.+|++...||..+.|.+.. ..|++++||||||||--|.|-||..|....+... ....-..+.++|++.||.-+++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 40066888877787741465147887799777899716789999999998501455434687139999256889999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCC----CCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 9999854469879999889987999996128975998223101332100012----246431899961311001001235
Q gi|254780601|r 93 ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL----NISHLKAVVLDEADEMLDLGFRDD 168 (573)
Q Consensus 93 ~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l----~l~~v~~lVlDEaD~ml~~gf~~~ 168 (573)
.+.+-....|++|.-+.|.+...+.. + ..+||||.||.+. |.+.|+.. -.+.|+.+++||.-. |.----.-
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHl-Lhd~RGpv 257 (1230)
T KOG0952 183 KFSKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHL-LHDDRGPV 257 (1230)
T ss_pred HHHHHCCCCCCEEEEECCCCHHHHHH--H-HHCCEEEECCCCE-EEEEEEECCCHHHHHHEEEEEEEEEHH-HCCCCCCH
T ss_conf 98664242462588841754566778--7-7437797063400-046654126265555420488530012-15766406
Q ss_pred HHHHHHHCC-------CCCCEEEEECCCCCCCHHHHHHHCCCC--CCCC-CCCCCCCCCCCCHHCCCCCCC---HHHHH-
Q ss_conf 788875214-------334225631111222001111210123--3332-333232566520000000000---02455-
Q gi|254780601|r 169 IEFILDSSP-------KKRRMLMFSATISPAITTLAKNYQKDA--VRVN-IASENRQHSDIDYRAVLVALS---DRDNA- 234 (573)
Q Consensus 169 i~~i~~~~p-------~~~q~~l~SAT~~~~i~~l~~~~~~~p--~~i~-~~~~~~~~~~i~~~~~~v~~~---~k~~~- 234 (573)
+|.|+..+- ..-+.+-.|||+|+ +.+++. ||+-+ .-+. ....-..++ ++|.++-++.. .....
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~-fL~vn~~~glfsFd~~yRPvp-L~~~~iG~k~~~~~~~~~~~ 334 (1230)
T KOG0952 258 LETIVARTLRLVESSQSMIRIVGLSATLPN-YEDVAR-FLRVNPYAGLFSFDQRYRPVP-LTQGFIGIKGKKNRQQKKNI 334 (1230)
T ss_pred HHHHHHHHHHHHHHHHHHEEEEEEECCCCC-HHHHHH-HHCCCCCCCEEEECCCCCCCC-EEEEEEEEECCCCHHHHHHH
T ss_conf 999999999998854200578886245787-799999-866787566265202320343-11168742124420024667
Q ss_pred ----HHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHC----CCCCC-------------------CCCCCCCHHHHHHH
Q ss_conf ----420010-235641677513023345655555422----66630-------------------10489999999999
Q gi|254780601|r 235 ----IVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEH----LFQVV-------------------ALSGELSQQERSNA 286 (573)
Q Consensus 235 ----l~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~----g~~~~-------------------~lhg~~~q~~R~~~ 286 (573)
..++++ ..+..+++|||.++..+-+.+..|.+. |.+.. ..|.+|.-+.|..+
T Consensus 335 d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952 335 DEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 77899999999974985999996574899999999999886286565678836678999987401020256431468999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC-----------CHHHHHHHHCCCCC--CCCCCEEEEEECHHHH
Q ss_conf 8665448814998538650014578873389705887-----------47899986030103--7888602564059999
Q gi|254780601|r 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS-----------NPENLLHRSGRTGR--AGRKGMSVFVIPQNMQ 353 (573)
Q Consensus 287 ~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~-----------~~~~yvHR~GRtgR--ag~~G~ai~l~~~~e~ 353 (573)
.+.|..|.++||+||--.|=|.++|. .+||-..-+. ..-+-++=.||+|| ++..|.+|.+-+.+..
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952 415 EKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred HHHHHCCCCEEEEECCEEEECCCCCC-EEEEECCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHH
T ss_conf 99985598228996121331257764-18986487411356684354028888998720689987777628999665079
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.2e-26 Score=198.44 Aligned_cols=326 Identities=22% Similarity=0.321 Sum_probs=223.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 89999999787987898999999999759------969999289874689999999998610421225568827999849
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLRE------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P 82 (573)
+.+.+.++.+.|. +|.-|+++|.-|..+ -+=++|.--|||||+--++.++.-+. .+-|+..++|
T Consensus 250 ~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q~ALMAP 319 (677)
T COG1200 250 ELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCEEEEECC
T ss_conf 9999999858997-67899999999986644866667875267677789999999999987---------2881688663
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 9899999999999985446987999988998799---99961289-7599822310133210001224643189996131
Q gi|254780601|r 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 83 TrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~---q~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
|--||.|.+..+.++....+++|..+.|...-.. ....|.+| +||||||-. +-+..+.+.++-++|+||=-
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCH-----HHHCCEEECCEEEEEEECCC
T ss_conf 7999999999999876651974898644665067999999874799897997221-----22045044202389972521
Q ss_pred CCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCHHHHHH
Q ss_conf 10010012357888752143-34225631111222001111210123333233323256--6520000000000024554
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAI 235 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~-~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~--~~i~~~~~~v~~~~k~~~l 235 (573)
+- |- .. ...|..-.. ....+++|||=-+....|+ ...|- .+++-. +... .-|.-.+ ++...+...+
T Consensus 395 RF---GV-~Q-R~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDl-dvS~Id-ElP~GRkpI~T~~--i~~~~~~~v~ 463 (677)
T COG1200 395 RF---GV-HQ-RLALREKGEQNPHVLVMTATPIPRTLALT--AFGDL-DVSIID-ELPPGRKPITTVV--IPHERRPEVY 463 (677)
T ss_pred CC---CH-HH-HHHHHHHCCCCCCEEEEECCCCHHHHHHH--HHCCC-CCHHHC-CCCCCCCCEEEEE--ECCCCHHHHH
T ss_conf 02---29-99-99999737899967999579850788988--86146-301112-5798997408999--6444479999
Q ss_pred HHCC-CCCCCCEEEEECCCH--------HHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2001-023564167751302--------3345655555422--6663010489999999999866544881499853865
Q gi|254780601|r 236 VNIL-RYHGAKNAIVFCSTR--------ASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 (573)
Q Consensus 236 ~~ll-~~~~~~~~ivF~~t~--------~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDva 304 (573)
.++. +..+..++.|-|.-. ..++++++.|... ++++.-+||.|+..+.+++|+.|++|+++|||||.|.
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 99999997499799995253543311365499999999987054636777568986779999999980887689981389
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHH-HHCCCCCCCCCCEEEEEECHHH----HHHHHHHH
Q ss_conf 00145788733897058874789998-6030103788860256405999----99999999
Q gi|254780601|r 305 ARGIDLPDLELVIHAELSSNPENLLH-RSGRTGRAGRKGMSVFVIPQNM----QRRAERLF 360 (573)
Q Consensus 305 aRGiDi~~v~~Vin~d~P~~~~~yvH-R~GRtgRag~~G~ai~l~~~~e----~~~~~~i~ 360 (573)
.-|+|+||-+..|-+|.-.==-+=+| ==||+||.+.+..|++++.+.. ..+++-+.
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~ 604 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMR 604 (677)
T ss_pred EECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9523578870799965433037888875265578875448999967987756899999887
No 61
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=3.8e-25 Score=188.29 Aligned_cols=302 Identities=23% Similarity=0.288 Sum_probs=199.1
Q ss_pred CCCCCHHHHHHHHHHHC----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 98789899999999975----99699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 20 YVNLTSVQEAILNPDLR----EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~----g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
...|.|.|++++..+.. ++..++.+|||+|||...+- ++..+. ..+||||||+||+.|-++.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~-----------~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELK-----------RSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH-HHHHHC-----------CCEEEEECCHHHHHHHHHHHH
T ss_conf 78885999999999996222578679996799988999999-999826-----------988999782999999999999
Q ss_pred HHHHHCCCE-EEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 985446987-9999889987999996128975998223101332100012246431899961311001001235788875
Q gi|254780601|r 96 WLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 96 ~l~~~~~~~-v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
... +.. ..-.+||... .+.. ..|+|+|=.-+.-+-.-..+...+-..+|+||+-++-...|..-.+.+-.
T Consensus 102 ~~~---~~~~~~g~~~~~~~-----~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~ 172 (442)
T COG1061 102 KFL---LLNDEIGIYGGGEK-----ELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSA 172 (442)
T ss_pred HHC---CCCCCCCEECCCCC-----CCCC-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 734---88676603368723-----3577-74899983897641555540356667599975245784779999997510
Q ss_pred HCCCCCCEEEEECCCCCCC----HHHHH-----------------HHCCCCCCCCCCCCCCCCC----CCCHHC------
Q ss_conf 2143342256311112220----01111-----------------2101233332333232566----520000------
Q gi|254780601|r 175 SSPKKRRMLMFSATISPAI----TTLAK-----------------NYQKDAVRVNIASENRQHS----DIDYRA------ 223 (573)
Q Consensus 175 ~~p~~~q~~l~SAT~~~~i----~~l~~-----------------~~~~~p~~i~~~~~~~~~~----~i~~~~------ 223 (573)
..| .+-+|||.+..- ..+.. .|+..+..+.+.. ..+.. .-++..
T Consensus 173 ~~~----~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~-~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 173 AYP----RLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKV-TLTEDEEREYAKESARFRELL 247 (442)
T ss_pred CCE----EEEEECCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEE-CCCHHHHHHCCHHHHHHHHHH
T ss_conf 310----467714872448775248774057556733589983378757749999862-366287774031555555555
Q ss_pred --------------CCCCCCHHHHHHHHCCCCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------------0000000245542001023-5641677513023345655555422666301048999999999986
Q gi|254780601|r 224 --------------VLVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 (573)
Q Consensus 224 --------------~~v~~~~k~~~l~~ll~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~ 288 (573)
.......+...+..++..+ ...+++|||..+..+.+++..+...|+ +..+.|+.++.+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHH
T ss_conf 4310013456777776642899999999987532688669997577999999998626774-246657899889999999
Q ss_pred HHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC-C-CCCCEEEEEE
Q ss_conf 6544881499853865001457887338970588747899986030103-7-8886025640
Q gi|254780601|r 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-A-GRKGMSVFVI 348 (573)
Q Consensus 289 ~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR-a-g~~G~ai~l~ 348 (573)
.|+.|.+++||+++|+.-|+|+|+++.+|......+.-.|++|+||.=| + |++...+.++
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~ 388 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDY 388 (442)
T ss_pred HHHCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 98708952999961412665788875799977998799999996166347889996599999
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.95 E-value=2.4e-24 Score=182.90 Aligned_cols=328 Identities=18% Similarity=0.192 Sum_probs=233.7
Q ss_pred CHHHHHHHH-HCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 889999999-787987898999999999759------9699992898746899999999986104212255688279998
Q gi|254780601|r 8 PQVIGEALS-ERGYVNLTSVQEAILNPDLRE------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 8 ~~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
+....+..+ ...|+ .||=|.+||..++.. =|=+++.--|-|||---+-.++--.. .+-|+.||
T Consensus 586 d~~~~~eFe~~Fpye-ET~DQl~AI~eV~~DMes~~PMDRLiCGDVGfGKTEVA~RAAFkav~---------~gkQVavl 655 (1148)
T PRK10689 586 DREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVL 655 (1148)
T ss_pred CHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHH---------CCCEEEEE
T ss_conf 849999999609997-87689999999987763886774156768888779999999999996---------39808998
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH---HCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 4998999999999999854469879999889987999996---1289-75998223101332100012246431899961
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD---LQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~---l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDE 156 (573)
|||-=||.|.++.|..-....+++|..+..-.+..+|... |++| +||||||- -+-.+.+.+.++..+|+||
T Consensus 656 vPTTiLA~QH~~tF~~Rf~~~pv~i~~LsRf~s~ke~~~i~~~l~~G~idIvIGTH-----~ll~~dv~f~~LGLlIiDE 730 (1148)
T PRK10689 656 VPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH-----KLLQSDVKWKDLGLLIVDE 730 (1148)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEHHH-----HHHCCCCCCCCCCEEEECC
T ss_conf 36622379999999987641573377503888899999999998669987762048-----8866986546664378601
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH---H
Q ss_conf 3110010012357888752143342256311112220011112101233332333232566520000000000024---5
Q gi|254780601|r 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---N 233 (573)
Q Consensus 157 aD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~---~ 233 (573)
=-+ |-=.-++-++.+..+.-++-.|||==+....++-.-++|-=.|.+.+.+... |+- | |.+.+.. +
T Consensus 731 Eqr-----FGV~~KE~lk~l~~~vdvLtltATPIPRTL~msl~G~rdlS~i~tpP~~R~~--v~T-~--v~~~~~~~i~e 800 (1148)
T PRK10689 731 EHR-----FGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA--VKT-F--VREYDSLVVRE 800 (1148)
T ss_pred CHH-----CCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCC--CEE-E--EECCCHHHHHH
T ss_conf 021-----3799999997228998789762556446999988077330221369998987--089-9--83587299999
Q ss_pred HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 5420010235641677513023345655555422--66630104899999999998665448814998538650014578
Q gi|254780601|r 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 (573)
Q Consensus 234 ~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~ 311 (573)
++.+ +.....++..-||-..+.++++..|... ..++...||.|+..+-+++|.+|-+|+++|||||.+..-|||||
T Consensus 801 ai~r--e~~rggq~~~~~~~~~~i~~~~~~~~~~~p~~~~~~~hg~m~~~~~e~~m~~f~~~~~~~l~~ttiie~g~dip 878 (1148)
T PRK10689 801 AILR--EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 (1148)
T ss_pred HHHH--HHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCCC
T ss_conf 9999--99818808999532541999999999748777189998999989999999999759988999897876586677
Q ss_pred CCCEEEEECCCC--CHHHHHHHHCCCCCCCCCCEEEEEEC------HHHHHHHHHHHHHH
Q ss_conf 873389705887--47899986030103788860256405------99999999999985
Q gi|254780601|r 312 DLELVIHAELSS--NPENLLHRSGRTGRAGRKGMSVFVIP------QNMQRRAERLFREA 363 (573)
Q Consensus 312 ~v~~Vin~d~P~--~~~~yvHR~GRtgRag~~G~ai~l~~------~~e~~~~~~i~~~~ 363 (573)
+++..|-.+.-. =..-|- ==||+||.++.+.|++++. +.-.++++.|+.+.
T Consensus 879 ~ant~ii~~a~~~gl~ql~q-lrgrvgr~~~~ayaYll~~~~~~lt~~A~kRL~ai~~~~ 937 (1148)
T PRK10689 879 TANTIIIERADHFGLAQLHQ-LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1148)
T ss_pred CCCEEEEECHHHCCHHHHHH-HCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 88479997532145577775-436557788707999986787778989999999999706
No 63
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=7.2e-25 Score=186.42 Aligned_cols=283 Identities=26% Similarity=0.331 Sum_probs=199.3
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
..|| .|..+|..=..-++.|+...+.||||.|||. |++-+---+. . ++-.++++.||+-|+.|+++-+..
T Consensus 74 ~~G~-~~w~~Qr~WakR~~~g~SFaiiAPTG~GKTt-fgl~~sly~a--~------kgkks~~i~PT~~Lv~Q~~~kl~~ 143 (1176)
T PRK09401 74 KVGS-EPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMALYLA--K------KGKKSYIIFPTRLLVEQVVEKLRK 143 (1176)
T ss_pred HHCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHH--H------CCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 8689-9848899999998668974898889988889-9999999998--6------598399996888999999999999
Q ss_pred HHHHC--CCEEEEEECCCCHHHHHH---HHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC--------
Q ss_conf 85446--987999988998799999---61289-75998223101332100012246431899961311001--------
Q gi|254780601|r 97 LYAKT--GVVVAVCIGGVSVHRERR---DLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-------- 162 (573)
Q Consensus 97 l~~~~--~~~v~~~~gg~~~~~q~~---~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~-------- 162 (573)
++... ++++...+|+++-.+... .+++| -||+|+|-.-|..+.+ .+.-..-.++.+|.+|-.|.
T Consensus 144 ~~~~~~~~~~~~~y~~~~~~~~kee~~~~~~~gdfdIlitT~~fl~kn~~--~l~~~~f~fifvDDVDs~LKssKnid~~ 221 (1176)
T PRK09401 144 LAEKVGVKVRLLYYHSSLKKKEKEEFLERLEEGDFDILVTTSQFLSKNFD--ELPKDRFDFVFVDDVDAVLKSSKNIDKL 221 (1176)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH--HCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 99970998408998567766678999988655998689985676765487--6035688889993418777523409999
Q ss_pred ---CHHHHH-HHHHHHHC-------------------------CCCCCEEEEECCCCCC-CH-HHHHHHCCCCCCCCCCC
Q ss_conf ---001235-78887521-------------------------4334225631111222-00-11112101233332333
Q gi|254780601|r 163 ---LGFRDD-IEFILDSS-------------------------PKKRRMLMFSATISPA-IT-TLAKNYQKDAVRVNIAS 211 (573)
Q Consensus 163 ---~gf~~~-i~~i~~~~-------------------------p~~~q~~l~SAT~~~~-i~-~l~~~~~~~p~~i~~~~ 211 (573)
+||.++ |+.-++.+ ....+.++.|||-.+. .. .|-+..| -..+.+
T Consensus 222 l~llGf~~e~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~livsSAT~~prg~r~~lfreLl----gFevg~ 297 (1176)
T PRK09401 222 LKLLGFSEEDIEKAMELIKLKRKTEELKEEIEELEEKIREIRKKKKGVLVVSSATGRPRGIRIKLFRELL----GFEVGR 297 (1176)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH----CCCCCC
T ss_conf 9983999999999999999752343444567788999998743687499997577788885389999982----986788
Q ss_pred CCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 232566520000000000024554200102356416775130---23345655555422666301048999999999986
Q gi|254780601|r 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST---RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288 (573)
Q Consensus 212 ~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t---~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~ 288 (573)
.....-||...|... .+..+.+..++... ..-+|||+.+ +..+++++++|..+|+++...++. +...++
T Consensus 298 ~~~~lRni~D~y~~~--~~~~~~~~e~v~~l-G~GgLifv~~~~g~e~~~~~~~~l~~~g~~a~~~~~~-----~~~~le 369 (1176)
T PRK09401 298 PRFYLRNIVDVYIEP--EDLVEKLVELVKRL-GDGGLVFVPTDYGKEYAEELKEYLESHGIKAEAYSGR-----KKEFLE 369 (1176)
T ss_pred CCCCEEEEEEEECCC--CCHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECC-----CHHHHH
T ss_conf 642302125776057--66889999999984-8954999767658899999999999769669996058-----866888
Q ss_pred HHHCCCEEEEEE----CCCCCCCCCCCC-CCEEEEECCCC
Q ss_conf 654488149985----386500145788-73389705887
Q gi|254780601|r 289 MMRDGRARVCIA----TDVAARGIDLPD-LELVIHAELSS 323 (573)
Q Consensus 289 ~fr~g~~~vLV~----TDvaaRGiDi~~-v~~Vin~d~P~ 323 (573)
+|.+|++++||. ..+++||||.|. |.++|-|.+|.
T Consensus 370 ~f~~Ge~dvLvG~asyyg~lvRGiDlP~~irYaiF~GvPk 409 (1176)
T PRK09401 370 KFEEGEIDVLIGVASYYGVLVRGIDLPERIRYAIFYGVPK 409 (1176)
T ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCE
T ss_conf 9757886489997012452101577641168999976963
No 64
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.94 E-value=2.9e-26 Score=195.81 Aligned_cols=144 Identities=42% Similarity=0.568 Sum_probs=127.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 96999928987468999999999861042122556882799984998999999999999854469879999889987999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+|+++.|+||||||++|++|+++.+... ..+++||++||++|+.|+++.+.++... ...+..++|+.+...+
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHH
T ss_conf 9999988997179999999999999756-------8976999746799999999999997488-7179999613636778
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 996128975998223101332100012246431899961311001001235788875214334225631111
Q gi|254780601|r 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 (573)
Q Consensus 118 ~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~ 189 (573)
.......++|+|+||+++..++.+..+.+++++++|+||||.|++.+|...+..++...+...|++++|||.
T Consensus 73 ~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSATp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHCCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 987458984998288999999973876555100999988887643796999999999679999489982899
No 65
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.94 E-value=3.5e-25 Score=188.54 Aligned_cols=188 Identities=36% Similarity=0.495 Sum_probs=162.2
Q ss_pred HCCCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 787987898999999999759-9699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
..++..|+|.|.++++.++.+ +++++.++||||||+++++++++.+.... ..++||++||++|+.|..+.+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~li~~P~~~l~~q~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-------CCEEEEEECCHHHHHHHHHHHH
T ss_conf 137999998899999999838998899899996099999999999863389-------9759999085999999998860
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHCCCC-EEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 985446987999988998799999612897-5998223101332100012246431899961311001001235788875
Q gi|254780601|r 96 WLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 96 ~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~-~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
.+..........++||.+.....+.+.++. +|+|+||+.+.+++.+..+.+..+.++|+|||+.+.+.+|...+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHHHH
T ss_conf 10210204455652477379999999759998999558999999972754525431999989677512570999999999
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 2143342256311112220011112101233332333
Q gi|254780601|r 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 (573)
Q Consensus 175 ~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~ 211 (573)
.++...+.+++|||.+.....+...++.++..+....
T Consensus 156 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 6799997899924898689999999789978998089
No 66
>KOG0353 consensus
Probab=99.94 E-value=2.8e-24 Score=182.43 Aligned_cols=337 Identities=21% Similarity=0.307 Sum_probs=236.1
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 89999999-78798789899999999975996999928987468999999999861042122556882799984998999
Q gi|254780601|r 9 QVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 9 ~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
.+...-|+ -...++..|.|..+|...+.|.|+++.-+||.||.|+|.||.|.. .-.+||+||---|.
T Consensus 80 ~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~plislm 147 (695)
T KOG0353 80 DEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVICPLISLM 147 (695)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHC------------CCCEEEECHHHHHH
T ss_conf 178999998763773470378775552226746999837996124522358762------------87457610268888
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH---HH---CCCCEEEEECCCCHHH---HHH--CCCCCCCCCEEEEEEC
Q ss_conf 99999999985446987999988998799999---61---2897599822310133---210--0012246431899961
Q gi|254780601|r 88 VQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DL---QNGAHIVVGTPGRLCD---HIR--GKGLNISHLKAVVLDE 156 (573)
Q Consensus 88 ~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~---~l---~~~~~iiv~TPgrl~d---~~~--~~~l~l~~v~~lVlDE 156 (573)
. +++..| +.+|+....+-...+-+.-.+ ++ ...-.++.-||.++.. +++ .+.+.....+.+.+||
T Consensus 148 e---dqil~l-kqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353 148 E---DQILQL-KQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred H---HHHHHH-HHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 9---999999-980864443057554888989999870777615899964899877799999999876426048985310
Q ss_pred CCCCCCCH--HHHHHHH--HHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC--CH
Q ss_conf 31100100--1235788--875214334225631111222001111210123333233323256652000000000--00
Q gi|254780601|r 157 ADEMLDLG--FRDDIEF--ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SD 230 (573)
Q Consensus 157 aD~ml~~g--f~~~i~~--i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~--~~ 230 (573)
+.----.| |++|... ||+.-=+..-.+-..||-...|.+=++..+-=-...+. ...-.-+|+++.+..-+. .+
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~n~dd 302 (695)
T KOG0353 224 VHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPGNEDD 302 (695)
T ss_pred EEEHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHEE-ECCCCCCCCEEEEEECCCCHHH
T ss_conf 232654376657416888899975799965632311000035678887747865112-0236888732674518997577
Q ss_pred HHHHHHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 2455420010-235641677513023345655555422666301048999999999986654488149985386500145
Q gi|254780601|r 231 RDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309 (573)
Q Consensus 231 k~~~l~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiD 309 (573)
=.+-+.+++. ......+||||-++.+|+.++..|.++|+.+.++|..|...+|.-+-+.+-.|+++|+|||-....|||
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgid 382 (695)
T KOG0353 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGID 382 (695)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
T ss_conf 89999998544437876569995346589999999855835221405568534454000330460689999864025678
Q ss_pred CCCCCEEEEECCCCCHHHHHH-------------------------------------------HHCCCCCCCCCCEEEE
Q ss_conf 788733897058874789998-------------------------------------------6030103788860256
Q gi|254780601|r 310 LPDLELVIHAELSSNPENLLH-------------------------------------------RSGRTGRAGRKGMSVF 346 (573)
Q Consensus 310 i~~v~~Vin~d~P~~~~~yvH-------------------------------------------R~GRtgRag~~G~ai~ 346 (573)
-|+|.+|||-.+|.++|.|.+ .+||.||.|.+..||+
T Consensus 383 kpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cil 462 (695)
T KOG0353 383 KPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCIL 462 (695)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCCEEEEEEECCHHCCCCCCCCCCCCEEE
T ss_conf 88716999536616689999887899998765225556787530004334013101222203110255566888664799
Q ss_pred EECHHHHHHHHHHHHH
Q ss_conf 4059999999999998
Q gi|254780601|r 347 VIPQNMQRRAERLFRE 362 (573)
Q Consensus 347 l~~~~e~~~~~~i~~~ 362 (573)
+|.-.+..++..+...
T Consensus 463 yy~~~difk~ssmv~~ 478 (695)
T KOG0353 463 YYGFADIFKISSMVQM 478 (695)
T ss_pred EECHHHHHHHHHHHHH
T ss_conf 8424778767778878
No 67
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=99.93 E-value=2.3e-24 Score=182.99 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=116.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 23564167751302334565555542266630104899999999998665448814998538650014578873389705
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
....++++|-+=||+.+|+|+++|.+.|++|..||+|+..-+|..++.++|.|.++|||.=+++=-|||+|.|++|=-+|
T Consensus 444 ~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILD 523 (667)
T TIGR00631 444 VARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 523 (667)
T ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHC
T ss_conf 97289489982016778899999705883798714557899999999984478840886000200246511488997632
Q ss_pred -----CCCCHHHHHHHHCCCCCCCCCCEEEEEE---CH--------HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -----8874789998603010378886025640---59--------9999999999985066410568
Q gi|254780601|r 321 -----LSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ--------NMQRRAERLFREANVSVVWEPA 372 (573)
Q Consensus 321 -----~P~~~~~yvHR~GRtgRag~~G~ai~l~---~~--------~e~~~~~~i~~~~~~~~~~~~~ 372 (573)
++.+--+.|+=|||++| +-.|.+|... |+ -++|+-.+++-.-.++|+..++
T Consensus 524 ADKEGFLRSerSLIQTIGRAAR-N~~G~VilYAD~iT~sM~~AI~ET~RRR~~Q~~YNe~HgItP~ti 590 (667)
T TIGR00631 524 ADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIEETERRRKIQIAYNEEHGITPQTI 590 (667)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7888998663027889888752-579659997287007899999987888999999997538978854
No 68
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.3e-21 Score=164.62 Aligned_cols=325 Identities=21% Similarity=0.258 Sum_probs=223.7
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 8999999-9787987898999999999759------96999928987468999999999861042122556882799984
Q gi|254780601|r 9 QVIGEAL-SERGYVNLTSVQEAILNPDLRE------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 9 ~~l~~~l-~~~g~~~pt~iQ~~~ip~~l~g------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
.+..... +..+|+ -||=|..||..+.+. =|=+++.--|=|||---.=.++--+ ..+.|+.|||
T Consensus 581 ~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---------~~GKQVAvLV 650 (1139)
T COG1197 581 TEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---------MDGKQVAVLV 650 (1139)
T ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHH---------CCCCEEEEEC
T ss_conf 58999998549985-7878999999999886069866102565768759999999999986---------3797499992
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH---HHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 99899999999999985446987999988998799999---61289-759982231013321000122464318999613
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~---~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
||--||.|.++.|+.=.++.+++|..+-.=.+-.+|.. .|+.| +||||||- -+-.+.+.+.++..+|+||=
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEE 725 (1139)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECH-----HHHCCCCEEECCCEEEEECH
T ss_conf 6078689989999987338982588860557889999999998569845899631-----76478967704764897443
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHH---HHH
Q ss_conf 11001001235788875214334225631111222001111210123333233323256652000000000002---455
Q gi|254780601|r 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR---DNA 234 (573)
Q Consensus 158 D~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k---~~~ 234 (573)
-+ |-=.-++-++.+..+.-++-.|||=-+....++=.-+++--.|.+.+.+.-. |+ .| |.+.+. -++
T Consensus 726 qR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~-T~--V~~~d~~~ireA 795 (1139)
T COG1197 726 QR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VK-TF--VSEYDDLLIREA 795 (1139)
T ss_pred HH-----CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHHHHCCCCCCCCCC--EE-EE--EECCCHHHHHHH
T ss_conf 53-----2711789998775057289741788754477777443033111479987721--28-88--715882899999
Q ss_pred HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
Q ss_conf 420010235641677513023345655555422--666301048999999999986654488149985386500145788
Q gi|254780601|r 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 (573)
Q Consensus 235 l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~ 312 (573)
+.+ +.....++..-+|..++.+++++.|... -.++...||.|+-.+=+.+|..|-+|+++|||||.+..-|||||+
T Consensus 796 I~R--El~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 796 ILR--ELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHH--HHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
T ss_conf 999--871598799994333129999999998598468888525888899999999997288888988234304767778
Q ss_pred CCEEEEECCCC--CHHHHHHHHCCCCCCCCCCEEEEEECH------HHHHHHHHHHH
Q ss_conf 73389705887--478999860301037888602564059------99999999999
Q gi|254780601|r 313 LELVIHAELSS--NPENLLHRSGRTGRAGRKGMSVFVIPQ------NMQRRAERLFR 361 (573)
Q Consensus 313 v~~Vin~d~P~--~~~~yvHR~GRtgRag~~G~ai~l~~~------~e~~~~~~i~~ 361 (573)
.+..|-.+.-. =..-|--| ||+||..+.|.|++++.+ .-.++++.|..
T Consensus 874 ANTiIIe~AD~fGLsQLyQLR-GRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLR-GRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CCEEEEECCCCCCHHHHHHHC-CCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 755889654334578888751-65477676289999626755458789999999972
No 69
>KOG0951 consensus
Probab=99.92 E-value=2.5e-21 Score=162.64 Aligned_cols=335 Identities=19% Similarity=0.292 Sum_probs=227.5
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC--CCCEEEEECCCHHHHHHHHHHH
Q ss_conf 87987898999999999759-96999928987468999999999861042122556--8827999849989999999999
Q gi|254780601|r 18 RGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPLALAIAPTRELAVQVGREL 94 (573)
Q Consensus 18 ~g~~~pt~iQ~~~ip~~l~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~--~~~~~lil~PTrELa~Qv~~~~ 94 (573)
.|+.....||.+.-+..+.+ .+++++||||+|||---++-+|+.+....+..... ..-..+.++|..-|+.-+...+
T Consensus 305 ~g~~sLNrIQS~V~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLVqE~Vgsf 384 (1674)
T KOG0951 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHHHHH
T ss_conf 34045667887777887557673787426788823799999999985354544541025613799842899999999888
Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCC---CCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 998544698799998899879999961289759982231013321000122---46431899961311001001235788
Q gi|254780601|r 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEF 171 (573)
Q Consensus 95 ~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~---l~~v~~lVlDEaD~ml~~gf~~~i~~ 171 (573)
.+-....|++|.-..|.+....+- + .+.+|+||||.+- |-+.|+.-+ .+-++.+|+||.+.+=|- =-.-++.
T Consensus 385 SkRla~~GItV~ElTgD~~l~~~q--i-eeTQVIVtTPEKw-DiITRk~gdraY~qlvRLlIIDEIHLLhDd-RGpVLES 459 (1674)
T KOG0951 385 SKRLAPLGITVLELTGDSQLGKEQ--I-EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLES 459 (1674)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHH--H-HCCEEEEECCCHH-HHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-CCHHHHH
T ss_conf 864235671798732654100443--2-1220287064222-211104674238888888765444321556-6407889
Q ss_pred HHHHC-------CCCCCEEEEECCCCCCCHHHHHHHCC-CCCCC-CCCCCCCCCCCCCHHCCCCCCCHHH---H-----H
Q ss_conf 87521-------43342256311112220011112101-23333-2333232566520000000000024---5-----5
Q gi|254780601|r 172 ILDSS-------PKKRRMLMFSATISPAITTLAKNYQK-DAVRV-NIASENRQHSDIDYRAVLVALSDRD---N-----A 234 (573)
Q Consensus 172 i~~~~-------p~~~q~~l~SAT~~~~i~~l~~~~~~-~p~~i-~~~~~~~~~~~i~~~~~~v~~~~k~---~-----~ 234 (573)
|...+ -.....+-.|||+|+- .+. ..|++ +|.-+ ...+.-..+| ++|.|+-|.++... . .
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLPNy-~DV-~~Fl~v~~~glf~fd~syRpvP-L~qq~Igitek~~~~~~qamNe~~ 536 (1674)
T KOG0951 460 IVARTFRRSESTEEGSRLVGLSATLPNY-EDV-ASFLRVDPEGLFYFDSSYRPVP-LKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCH-HHH-HHHHCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999999865124574364101557861-655-7775558532413575557677-641476330378067777778999
Q ss_pred HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-------------C------------------------CCCCCCCCC
Q ss_conf 420010235641677513023345655555422-------------6------------------------663010489
Q gi|254780601|r 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH-------------L------------------------FQVVALSGE 277 (573)
Q Consensus 235 l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~-------------g------------------------~~~~~lhg~ 277 (573)
.-++++.....++|||+.+|+.+.+.+.++... + |...-.|.+
T Consensus 537 yeKVme~agk~qVLVFVHsRKET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEECCC
T ss_conf 99999737878589999833578899999999886453799987634411456554442015830787731351331167
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE----EECC------CCCHHHHHHHHCCCCCCC--CCCEEE
Q ss_conf 9999999998665448814998538650014578873389----7058------874789998603010378--886025
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI----HAEL------SSNPENLLHRSGRTGRAG--RKGMSV 345 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi----n~d~------P~~~~~yvHR~GRtgRag--~~G~ai 345 (573)
|+-.+|..+.+-|++|.++|||+|--.|+|++.|.=+.+| -||. +-++-+-+++.||.||-+ ..|--|
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 78623778999874486268875024564247776268960762158345766627879999997544897647678645
Q ss_pred EEECHHHHHHHHHHH
Q ss_conf 640599999999999
Q gi|254780601|r 346 FVIPQNMQRRAERLF 360 (573)
Q Consensus 346 ~l~~~~e~~~~~~i~ 360 (573)
.+-..+|..+...++
T Consensus 697 iit~~se~qyyls~m 711 (1674)
T KOG0951 697 IITDHSELQYYLSLM 711 (1674)
T ss_pred ECCCCHHHHHHHHHH
T ss_conf 504706763118755
No 70
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.92 E-value=3.7e-22 Score=168.19 Aligned_cols=344 Identities=18% Similarity=0.204 Sum_probs=227.7
Q ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC----C
Q ss_conf 988999999-9787987898999999999759------9699992898746899999999986104212255688----2
Q gi|254780601|r 7 IPQVIGEAL-SERGYVNLTSVQEAILNPDLRE------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----P 75 (573)
Q Consensus 7 l~~~l~~~l-~~~g~~~pt~iQ~~~ip~~l~g------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~----~ 75 (573)
.+.+....+ .+-+|+ .||=|.+||..+.+. =|=+++.--|=|||--=.=.++--+ ..+ +
T Consensus 493 ~D~e~~~~Fe~~FPfe-eT~DQ~~AI~eik~Dm~~~~~MDRL~CGDVGfGKTEVAmRAaFkAv---------~~gneylK 562 (997)
T TIGR00580 493 PDDEWQAEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV---------LDGNEYLK 562 (997)
T ss_pred CCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH---------CCCCCEEC
T ss_conf 8808999999838788-9778999999999974068987346524548853688887888763---------38782201
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH---HHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEE
Q ss_conf 799984998999999999999854469879999889987999---9961289-759982231013321000122464318
Q gi|254780601|r 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE---RRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKA 151 (573)
Q Consensus 76 ~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q---~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~ 151 (573)
|+.|||||==||.|.++.|+.=.++.+++|..+-+=.+-.++ +..|++| +||||||= =|-.+.+.+.++..
T Consensus 563 QVavLVPTT~LA~QHf~tf~~RF~~fPv~I~~LSRF~~~~E~~~iL~~la~G~iDI~IGTH-----~lL~k~v~FKdLGL 637 (997)
T TIGR00580 563 QVAVLVPTTILAQQHFETFKERFANFPVTIELLSRFRSAKEKKEILKELASGKIDILIGTH-----KLLQKDVKFKDLGL 637 (997)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCH-----HHHCCCEEEECCCC
T ss_conf 1689627044277788999997378981687527756737899999997559422663010-----41278546863864
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHH
Q ss_conf 99961311001001235788875214334225631111222001111210123333233323256652000000000002
Q gi|254780601|r 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231 (573)
Q Consensus 152 lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k 231 (573)
|||||=-+ |-=.=++=+|.+-.+.-++-.|||==|....++=.-+++==.|.+.+.+.-. |+-+ |.+.+-
T Consensus 638 lIiDEEQR-----FGV~~KE~lK~~~~~VDvLtlsATPIPRTL~MSl~g~RdlS~I~TPP~~R~p--v~T~---v~~~~~ 707 (997)
T TIGR00580 638 LIIDEEQR-----FGVKQKEKLKELKTSVDVLTLSATPIPRTLHMSLSGIRDLSIIATPPEDRLP--VRTF---VMEYDD 707 (997)
T ss_pred EEEECCCC-----CCCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCC--EEEE---EECCCH
T ss_conf 69831434-----8831155530015676567633789605589998755332210578887742--4887---742786
Q ss_pred HHHHHHCC--CCCCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 45542001--0235641677513023345655555422--6663010489999999999866544881499853865001
Q gi|254780601|r 232 DNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307 (573)
Q Consensus 232 ~~~l~~ll--~~~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRG 307 (573)
..+...| |..-..++-.-.|-.++-+.+...|... -.+....||.|..++=+.+|.+|.+|+++|||||-+..=|
T Consensus 708 -~~~~~AI~rEL~RgGQvFyv~Nrie~i~~~~~~l~~LVP~arIaiaHGqM~e~eLE~~m~~F~~~~~~vLvcTTIIE~G 786 (997)
T TIGR00580 708 -ELVREAIRRELLRGGQVFYVHNRIESIEKLKTQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFDVLVCTTIIESG 786 (997)
T ss_pred -HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCC
T ss_conf -8999999975313981899808813578999999850843267888335684568999998626843301322146505
Q ss_pred CCCCCCCEEEEECCC--CCHHHHHHHHCCCCCCCCCCEEEEEECHH------HHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 457887338970588--74789998603010378886025640599------9999999999850664105689999988
Q gi|254780601|r 308 IDLPDLELVIHAELS--SNPENLLHRSGRTGRAGRKGMSVFVIPQN------MQRRAERLFREANVSVVWEPAPSVEAIR 379 (573)
Q Consensus 308 iDi~~v~~Vin~d~P--~~~~~yvHR~GRtgRag~~G~ai~l~~~~------e~~~~~~i~~~~~~~~~~~~~Ps~eeI~ 379 (573)
||||+++..|--+.= -=..-|-=| ||+||..++|+||+||... -.++|+.|.++. .+-++-.|.
T Consensus 787 IDIPnANTiIi~~AD~FGLaQLYQLR-GRVGRs~~~AYAYlL~~~~~~Lt~~A~~RL~ai~~f~-------eLGaGf~iA 858 (997)
T TIGR00580 787 IDIPNANTIIIDRADKFGLAQLYQLR-GRVGRSKKKAYAYLLYPHQKALTEDALKRLEAIQEFS-------ELGAGFKIA 858 (997)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHCC-CEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC-------CCCCHHHHH
T ss_conf 64100126868752114703474536-3120587126898334774001458999999997301-------135216788
Q ss_pred HHHHH
Q ss_conf 88998
Q gi|254780601|r 380 ERDAQ 384 (573)
Q Consensus 380 ~~~~~ 384 (573)
-++++
T Consensus 859 ~hDlE 863 (997)
T TIGR00580 859 LHDLE 863 (997)
T ss_pred HHCCC
T ss_conf 63110
No 71
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.91 E-value=1.5e-24 Score=184.25 Aligned_cols=123 Identities=35% Similarity=0.641 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 00000024554200102--3564167751302334565555542266630104899999999998665448814998538
Q gi|254780601|r 225 LVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 225 ~v~~~~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
....++|++.|..++.. .+..++||||+++..++.++..|...|+++..+||++++.+|..++++|++|..+|||||+
T Consensus 7 ~~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~ 86 (131)
T cd00079 7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD 86 (131)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEE
T ss_conf 93866999999999999997899099997889999999999955899899998999999999999997754010488751
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 650014578873389705887478999860301037888602564
Q gi|254780601|r 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l 347 (573)
++++|||+|++++||+||+|.++..|+||+||+||.|++|.|+.+
T Consensus 87 ~~~~Gldl~~~~~vI~~~~~~s~~~~~Q~~GR~~R~gq~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 120036610287999978996989999897216708996379979
No 72
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.1e-22 Score=167.27 Aligned_cols=281 Identities=22% Similarity=0.322 Sum_probs=194.6
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
..|| +|...|..=-.-++.|+..-+.||||.|||. |++-+---+.. .+-+++|++||.-|+.|+++-+.+
T Consensus 78 ~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~--------kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 78 ATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK--------KGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHHH--------CCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 6389-8607889999998737844898278876547-99999999875--------587499996678999999999999
Q ss_pred HHHHCC-CEEEEEECCC-CHHHHH---HHHCC-CCEEEEECCCCHHHHHHCCCCCCC--CCEEEEEECCCCCCC------
Q ss_conf 854469-8799998899-879999---96128-975998223101332100012246--431899961311001------
Q gi|254780601|r 97 LYAKTG-VVVAVCIGGV-SVHRER---RDLQN-GAHIVVGTPGRLCDHIRGKGLNIS--HLKAVVLDEADEMLD------ 162 (573)
Q Consensus 97 l~~~~~-~~v~~~~gg~-~~~~q~---~~l~~-~~~iiv~TPgrl~d~~~~~~l~l~--~v~~lVlDEaD~ml~------ 162 (573)
++...+ .++..+|-+. +..... ..+++ .-||+|+|-.=|....+ .|+ +-+++.+|.+|-.|.
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~LkaskNvD 223 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAILKASKNVD 223 (1187)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH----HHCCCCCCEEEECCHHHHHHCCCCHH
T ss_conf 88653785246653123665779999999865996399974787886699----84045777899804788986344488
Q ss_pred -----CHHHHH-HH----------------------HHHHH--------CCCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf -----001235-78----------------------88752--------1433422563111122200111121012333
Q gi|254780601|r 163 -----LGFRDD-IE----------------------FILDS--------SPKKRRMLMFSATISPAITTLAKNYQKDAVR 206 (573)
Q Consensus 163 -----~gf~~~-i~----------------------~i~~~--------~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~ 206 (573)
.||-++ |+ .++.. -.+..+.++.|||-.+.=.++ ..+++-.-
T Consensus 224 riL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~--~LfReLlg 301 (1187)
T COG1110 224 RLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL--KLFRELLG 301 (1187)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH--HHHHHHHC
T ss_conf 8999808887888888999999998632236778999999888888775047736999605578777438--89999839
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 32333232566520000000000024554200102356416775130---233456555554226663010489999999
Q gi|254780601|r 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST---RASVSRFTKVLAEHLFQVVALSGELSQQER 283 (573)
Q Consensus 207 i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t---~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R 283 (573)
..+.+.....-||...|+.....+|..-|.+ .. ..-+|||+.+ +..+++++++|..+||++...|.. .
T Consensus 302 FevG~~~~~LRNIvD~y~~~~~~e~~~elvk---~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 302 FEVGSGGEGLRNIVDIYVESESLEKVVELVK---KL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CCCCCCCHHHHHEEEEECCCCCHHHHHHHHH---HH-CCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECC-----C
T ss_conf 8567640313000442036863788999999---84-8974999971773899999999998669607986232-----0
Q ss_pred HHHHHHHHCCCEEEEEE----CCCCCCCCCCCC-CCEEEEECCC
Q ss_conf 99986654488149985----386500145788-7338970588
Q gi|254780601|r 284 SNALQMMRDGRARVCIA----TDVAARGIDLPD-LELVIHAELS 322 (573)
Q Consensus 284 ~~~~~~fr~g~~~vLV~----TDvaaRGiDi~~-v~~Vin~d~P 322 (573)
...++.|..|++++||. ..++.||||.|. |.++|-|++|
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEEECCC
T ss_conf 22456650676017998502134302247743454578995587
No 73
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.8e-21 Score=163.63 Aligned_cols=320 Identities=19% Similarity=0.198 Sum_probs=201.3
Q ss_pred CCHHHHHHHHHHHCC---C-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 898999999999759---9-699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 23 LTSVQEAILNPDLRE---K-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g---~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
+.+-|..+.-.++.. . .++..||||.|||.|.+++....+... ....++.+.+.|+|-+..|.++.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-----CCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 13556799999873225575189991688871999999999975311-----3545628996558999999999998751
Q ss_pred HHCCCEEEEEECCCCHHHHHH--------HH-------CCCCEEEEECCCCHHHH-HHCCCCC-C--CCCEEEEEECCCC
Q ss_conf 446987999988998799999--------61-------28975998223101332-1000122-4--6431899961311
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERR--------DL-------QNGAHIVVGTPGRLCDH-IRGKGLN-I--SHLKAVVLDEADE 159 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~--------~l-------~~~~~iiv~TPgrl~d~-~~~~~l~-l--~~v~~lVlDEaD~ 159 (573)
...++...... |.+...-.. .+ .....+.++||-.+.-. ....... + =....+|+||++.
T Consensus 271 ~~~~~~~~~~h-~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLH-SSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred CCCCCCCCCCC-CCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHH
T ss_conf 23554331001-31025565170100225888124223620452220699985574046672577887646778742754
Q ss_pred CCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC---CCCCCCCHHCCC-CCCCHHHHH
Q ss_conf 001001235788875214-334225631111222001111210123333233323---256652000000-000002455
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVL-VALSDRDNA 234 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p-~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~---~~~~~i~~~~~~-v~~~~k~~~ 234 (573)
|-+-.-..-+..++..+. .+...+++|||+|+...+..+.++.+...+...... ...+.+.+.... +........
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECCHHHHCCCHHHH
T ss_conf 16543089999999999968997899927899799999999850376121344323345543300000111320303776
Q ss_pred HHH-CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH----CCCEEEEEECCCCCCCCC
Q ss_conf 420-010235641677513023345655555422666301048999999999986654----488149985386500145
Q gi|254780601|r 235 IVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR----DGRARVCIATDVAARGID 309 (573)
Q Consensus 235 l~~-ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr----~g~~~vLV~TDvaaRGiD 309 (573)
... ..+..+..+++|-|||...+.+++..|...+.++..|||.+....|.+.++.++ .+...|+|||-|..=|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEC
T ss_conf 65567764258828999927899999999985558957998863557669999999988875378629998345998862
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCC--CCCEEEEEECHH
Q ss_conf 788733897058874789998603010378--886025640599
Q gi|254780601|r 310 LPDLELVIHAELSSNPENLLHRSGRTGRAG--RKGMSVFVIPQN 351 (573)
Q Consensus 310 i~~v~~Vin~d~P~~~~~yvHR~GRtgRag--~~G~ai~l~~~~ 351 (573)
|+ .+++|- =+..+.+.+||+||++|-| ..|..+.+...+
T Consensus 510 id-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 ID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred CC-CCEEEE--CCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 66-684663--478756799987777415666687169983466
No 74
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.90 E-value=5.2e-21 Score=160.50 Aligned_cols=320 Identities=23% Similarity=0.327 Sum_probs=207.3
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HHHHCCCEEEEEECCCC
Q ss_conf 75996999928987468999999999861042122556882799984998999999999999-85446987999988998
Q gi|254780601|r 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVS 113 (573)
Q Consensus 35 l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~-l~~~~~~~v~~~~gg~~ 113 (573)
-++..+|++|+||||||.- +|.. ++..... . -+.+++-|-|--|.-+++-+.. ++...|-.|.-.+.+.+
T Consensus 18 ~~~~~~vl~a~tGsGKtTq--vP~~--ll~~~~~----~-g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~ 88 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTW--LPLQ--LLQQGGI----N-GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHCCEEEEEECCCCCHHHH--HHHH--HHHCCCC----C-CCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 9799799990899998999--9999--9964688----9-9389938839999999999999729999986757825677
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-C----CCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 79999961289759982231013321000122464318999613110-0----100123578887521433422563111
Q gi|254780601|r 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-L----DLGFRDDIEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 114 ~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l----~~gf~~~i~~i~~~~p~~~q~~l~SAT 188 (573)
.......|.++|+|-|+..+.... .|+.+.++|+||+-|= | -+++. ..+...+.++-..+++|||
T Consensus 89 ------~~s~~Tri~~~T~GiLlr~l~~dp-~L~~~~~vI~DE~HER~l~~Dl~l~l~---~~~~~~~r~dLklvvMSAT 158 (812)
T PRK11664 89 ------KVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALL---LDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred ------CCCCCCEEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHH---HHHHHHHCCCCEEEEECCC
T ss_conf ------889985799975589999972497-767788899957546875189999999---9999861898289998478
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH-----HHHHHCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 12220011112101233332333232566520000000000024-----5542001023564167751302334565555
Q gi|254780601|r 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-----NAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 (573)
Q Consensus 189 ~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~-----~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~ 263 (573)
+..+ .+ ..|+.++-.|.+....- | |+.+|......+.+ .++..++. +....++||.....+...+++.
T Consensus 159 ld~~--~~-~~~~~~~~~i~~~gr~f--p-V~~~y~~~~~~~~~~~~~~~~i~~~~~-~~~G~iLvFLPG~~EI~~~~~~ 231 (812)
T PRK11664 159 LDND--RL-QQLLPDAPYIESEGRSF--P-VERRYQPLPAHQRFDEAVAVATAELLR-QESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred CCHH--HH-HHHCCCCCEEEECCCCC--C-EEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEECCCHHHHHHHHHH
T ss_conf 8848--89-97589998898787433--1-157854688520699999999999973-5899889976998999999999
Q ss_pred HHHC---CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC------------------
Q ss_conf 5422---6663010489999999999866544881499853865001457887338970588------------------
Q gi|254780601|r 264 LAEH---LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS------------------ 322 (573)
Q Consensus 264 L~~~---g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P------------------ 322 (573)
|... ++.+.+|||.|+.++..+++..-..|.-+|+++|++|.=.|-|++|.+||...+-
T Consensus 232 L~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQR 311 (812)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEE
T ss_conf 86335578089964478998898776067999953799950200020201781489740223443234357975676770
Q ss_pred CCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHH--------------HH--HHHHH----CCCCCCCCCCHHHHHHH
Q ss_conf 74789998603010378886025640599999999--------------99--99850----66410568999998888
Q gi|254780601|r 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--------------RL--FREAN----VSVVWEPAPSVEAIRER 381 (573)
Q Consensus 323 ~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~--------------~i--~~~~~----~~~~~~~~Ps~eeI~~~ 381 (573)
-+..+-.+|.||+||- ..|+|+=|++..+...+. -+ .+.++ .++.|...|..+.+...
T Consensus 312 iSkasa~QRaGRAGR~-~pG~cyRL~s~~~~~~~~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~a~~~A 389 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQLSWLDQPPAVNLAAA 389 (812)
T ss_pred CCHHHHHCCCCCCCCC-CCCEEEEEECHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHH
T ss_conf 4544353136767888-99707873359888527469980555276899999999659998776879999798999999
No 75
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=99.89 E-value=5.9e-21 Score=160.11 Aligned_cols=289 Identities=22% Similarity=0.314 Sum_probs=199.2
Q ss_pred HHHHH-CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 99997-87987898999999999759969999289874689999999998610421225568827999849989999999
Q gi|254780601|r 13 EALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 (573)
Q Consensus 13 ~~l~~-~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~ 91 (573)
+-.++ .|+. |-.+|+.==.-++.|+.--+.||||=|||. |++.+---+... ++-+++||.||.-||.|++
T Consensus 75 ~FF~~~~G~~-pws~Qk~WAKRv~~~~SFai~APTGVGKtt-FG~~mslflA~k-------KGkR~y~ilPT~lLv~Qv~ 145 (1843)
T TIGR01054 75 EFFKKAVGSE-PWSIQKSWAKRVLKGDSFAIVAPTGVGKTT-FGLVMSLFLAKK-------KGKRSYIILPTTLLVKQVA 145 (1843)
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHHHH-------CCCEEEEEECHHHHHHHHH
T ss_conf 9999971888-435679999996417964898058876779-999999998654-------2987899947078899999
Q ss_pred HHHHHHHHHCCCEE----EEEECCCCHHHHHH---HHCC-CCEEEEECCCCHHHHHHCCCCCCC---CCEEEEEECCCCC
Q ss_conf 99999854469879----99988998799999---6128-975998223101332100012246---4318999613110
Q gi|254780601|r 92 RELEWLYAKTGVVV----AVCIGGVSVHRERR---DLQN-GAHIVVGTPGRLCDHIRGKGLNIS---HLKAVVLDEADEM 160 (573)
Q Consensus 92 ~~~~~l~~~~~~~v----~~~~gg~~~~~q~~---~l~~-~~~iiv~TPgrl~d~~~~~~l~l~---~v~~lVlDEaD~m 160 (573)
+-+.++....|+.+ ...||-.+...... .+.+ +-||||+|-+=| .+..=.|. +-+++.+|..|-+
T Consensus 146 ~kl~~~~~k~g~~~~~l~~~yhS~L~~~~kke~~Eri~~GDfdilitT~~FL----~K~~~~L~~~y~F~liFVDDVDa~ 221 (1843)
T TIGR01054 146 EKLSSLAEKEGVGIVRLLGAYHSKLSTKEKKEVKERIENGDFDILITTSMFL----SKNFDKLKNQYKFDLIFVDDVDAL 221 (1843)
T ss_pred HHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEHHHHHHH----HHHHHHCCCCCEEEEEEEECHHHH
T ss_conf 9987520025750000222101126545678899987318917861224688----876651789851448997153676
Q ss_pred CC-----------CHHHHHH-H--------------------------------------HHH---HHCCCCC---C--E
Q ss_conf 01-----------0012357-8--------------------------------------887---5214334---2--2
Q gi|254780601|r 161 LD-----------LGFRDDI-E--------------------------------------FIL---DSSPKKR---R--M 182 (573)
Q Consensus 161 l~-----------~gf~~~i-~--------------------------------------~i~---~~~p~~~---q--~ 182 (573)
|. +||-+++ + .+. ...++.+ . .
T Consensus 222 Lk~skNVD~~L~LlGF~eE~i~~a~~~i~L~~k~~k~~~~~~~~~~~~R~E~~~~~LE~~~r~~~~~a~~~~krGr~g~L 301 (1843)
T TIGR01054 222 LKASKNVDKILKLLGFSEELIEKAYELIKLKLKENKLEEDLAREKIVVRLEARKKLLEAKRRLEKLEAEIKKKRGRKGVL 301 (1843)
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 31655566777551788999999999999988764357788888886467888999999999898776474324886469
Q ss_pred EEEECCCCCCCHH--HHHHHCCCCCCCCCCCCCCC-CCCCCHHCCCCCC--CHHHHHHHHCCCCCCCCEEEEECCCH---
Q ss_conf 5631111222001--11121012333323332325-6652000000000--00245542001023564167751302---
Q gi|254780601|r 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVAL--SDRDNAIVNILRYHGAKNAIVFCSTR--- 254 (573)
Q Consensus 183 ~l~SAT~~~~i~~--l~~~~~~~p~~i~~~~~~~~-~~~i~~~~~~v~~--~~k~~~l~~ll~~~~~~~~ivF~~t~--- 254 (573)
+..|||.-+.=.+ |=+..| -..+.....+ .-||--.|..... .++..--..+++.. ..-+|||+.+.
T Consensus 302 ivsSATG~prG~r~~LFR~LL----~FevG~~~~~GLRnvvD~y~~~~d~v~E~~~~sve~v~~L-G~GGlVyvs~~yG~ 376 (1843)
T TIGR01054 302 IVSSATGKPRGKRVKLFRELL----GFEVGKGSDTGLRNVVDVYEEDEDGVKEKLLESVELVKKL-GKGGLVYVSIDYGK 376 (1843)
T ss_pred EEEECCCCCCCCHHHHHHHHC----CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCH
T ss_conf 998514888761336536552----7100576422332138851148884468899999999984-79439997122255
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE----CCCCCCCCCCCC-CCEEEEECCCC
Q ss_conf 3345655555422666301048999999999986654488149985----386500145788-73389705887
Q gi|254780601|r 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA----TDVAARGIDLPD-LELVIHAELSS 323 (573)
Q Consensus 255 ~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~----TDvaaRGiDi~~-v~~Vin~d~P~ 323 (573)
+.|+++++.|..+|+++..+|..-+ ..-++.|..|+++|||- +.++.||||+|. |.+=|=|++|.
T Consensus 377 e~a~ei~~~L~~~Gv~A~~~~~~k~----~~~~~~F~~GE~dVliG~a~yyg~LVRGLDLP~rvRYAvF~G~Pk 446 (1843)
T TIGR01054 377 EKAEEIKEFLREHGVKAVAYHAKKP----KEDLEKFAEGEIDVLIGVASYYGVLVRGLDLPERVRYAVFLGVPK 446 (1843)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCC----CCCHHHHHCCCEEEEEEEECCCCCEEECCCCCCHHEEEEECCCCC
T ss_conf 8999999999857947999840377----320346634851368771015476353266610100023438995
No 76
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=1e-19 Score=151.85 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=109.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 23564167751302334565555542266630104899999999998665448814998538650014578873389705
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
.....+++|-+=||+.+++|+++|...|++|..||+++..-+|..++.++|.|.++|||.-+++--|||+|.|++|.-.|
T Consensus 443 ~~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILD 522 (657)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILD 522 (657)
T ss_pred HHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEE
T ss_conf 63697699995459899999999996798079962666188999999998588875897500220457876135798870
Q ss_pred CC-----CCHHHHHHHHCCCCCCCCCCEEEEEE---CHH--------HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88-----74789998603010378886025640---599--------999999999985066410568
Q gi|254780601|r 321 LS-----SNPENLLHRSGRTGRAGRKGMSVFVI---PQN--------MQRRAERLFREANVSVVWEPA 372 (573)
Q Consensus 321 ~P-----~~~~~yvHR~GRtgRag~~G~ai~l~---~~~--------e~~~~~~i~~~~~~~~~~~~~ 372 (573)
.- .+..+.++-+||++| +..|.+|.+. +++ ++++-.+++-.....|....+
T Consensus 523 ADKeGFLRs~~SLiQtiGRAAR-N~~G~vIlYAD~iT~SM~~ai~ET~rRR~iQ~~yN~~h~ItP~tI 589 (657)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (657)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6852210352059999878862-579749998154509999999999989999999999569986431
No 77
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=4.3e-20 Score=154.31 Aligned_cols=347 Identities=17% Similarity=0.230 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHH
Q ss_conf 78989999999997599--699992898746899999999986104212255688279998499899999999999-985
Q gi|254780601|r 22 NLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLY 98 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~--d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~-~l~ 98 (573)
.+-|-|--..-.+.+.. =+++.-.-|-|||.=-+|-+-+.+..... -++|||||-- |+.|=..++. +|
T Consensus 151 ~l~pHQ~~ia~~v~~r~~PRvLLADEVGLGKTIEAGLIl~ell~rgra-------~RvLIvvP~~-L~~QW~~EL~~KF- 221 (955)
T PRK04914 151 GLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGLIIHQQLLTGRA-------ERVLIIVPET-LQHQWLVEMLRRF- 221 (955)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC-------CEEEEECCHH-HHHHHHHHHHHHC-
T ss_conf 656379999999971458848970588886899999999999974877-------7799992779-9899999999983-
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHCCC----CEEEEECCCCHHHHHHCCC-----CCCCCCEEEEEECCCCCCCCH-HHHH
Q ss_conf 44698799998899879999961289----7599822310133210001-----224643189996131100100-1235
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDLQNG----AHIVVGTPGRLCDHIRGKG-----LNISHLKAVVLDEADEMLDLG-FRDD 168 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l~~~----~~iiv~TPgrl~d~~~~~~-----l~l~~v~~lVlDEaD~ml~~g-f~~~ 168 (573)
++.+.+ +....... ...-..+ -+++|++- |.+.+.. +.-..-.++|+|||-+|-.-. -...
T Consensus 222 -~L~f~i---~D~~r~~~-~~~~~~NpF~~~~~vI~Sl----d~l~~~~~~~e~l~~a~WDLVIVDEAHhL~~~~~~~s~ 292 (955)
T PRK04914 222 -NLRFSL---FDEERCAE-AQADADNPFETEQLVICSL----DFLRKNKKRLEQALDAEWDLLVVDEAHHLVWSEEAPSR 292 (955)
T ss_pred -CCCCEE---ECCHHHHH-HHCCCCCCCCCCCEEEEEH----HHHCCCHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCCH
T ss_conf -998099---55188887-5335799754589799878----99603967899873389888997134453058878887
Q ss_pred HHHHHHHCC-CCCCEEEEECCCCC-C---------------C----------------HHHHHHHCCCCCC---------
Q ss_conf 788875214-33422563111122-2---------------0----------------0111121012333---------
Q gi|254780601|r 169 IEFILDSSP-KKRRMLMFSATISP-A---------------I----------------TTLAKNYQKDAVR--------- 206 (573)
Q Consensus 169 i~~i~~~~p-~~~q~~l~SAT~~~-~---------------i----------------~~l~~~~~~~p~~--------- 206 (573)
-..++..+. ..+..+|.|||=-+ . . .+.+..++.+...
T Consensus 293 ~y~lve~La~~~~~lLLLTATP~QlG~e~~Fa~L~LLDPdrF~d~~~F~~e~~~y~~va~~v~~L~~~~~l~~~~~~~l~ 372 (955)
T PRK04914 293 EYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEEQQYRPVADAVQALLDGEKLSDDALNALG 372 (955)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999851597699847998898666898852779421158888998887557899999986315668889999999
Q ss_pred --C----------CCC------------------CCCCCC--------CCCC---HHC-----C----------------
Q ss_conf --3----------233------------------323256--------6520---000-----0----------------
Q gi|254780601|r 207 --V----------NIA------------------SENRQH--------SDID---YRA-----V---------------- 224 (573)
Q Consensus 207 --i----------~~~------------------~~~~~~--------~~i~---~~~-----~---------------- 224 (573)
+ .+. ....+. ..++ .+. .
T Consensus 373 ~~l~e~~~~~l~~~~~~~~~~~~~~r~~li~~Lldr~gtgrvlfRntRa~v~gfp~R~l~~~~l~~~~~~~~~~~~~~~~ 452 (955)
T PRK04914 373 ELLGEQDIEPLLQAINSDSEDAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPYPLPLPEQYQTAIRKSLEA 452 (955)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 98644114478987521444569999999999986232157777656777431655453105678715678765432324
Q ss_pred ---------------------CCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHH
Q ss_conf ---------------------000000245542001023564167751302334565555542-2666301048999999
Q gi|254780601|r 225 ---------------------LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQE 282 (573)
Q Consensus 225 ---------------------~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~-~g~~~~~lhg~~~q~~ 282 (573)
......|...|..+|......++||||..+..++.|.+.|.. .|+.+..+||+|+-.+
T Consensus 453 ~~~~~l~~E~~~~~~~~~~~~~~~~D~rv~~Li~~Lk~~~~eKvLVFte~~~Ta~~L~~~Lr~~~Gi~~avfh~gms~~E 532 (955)
T PRK04914 453 RARDMLYPEQIYQEFEGDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAETALQLEQALREREGIRAAVFHEGMSIIE 532 (955)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 67875173566654565565542138899999999985779858999683899999999998755995699709999899
Q ss_pred HHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEE----CHHHHHHH
Q ss_conf 999986654488--149985386500145788733897058874789998603010378886025640----59999999
Q gi|254780601|r 283 RSNALQMMRDGR--ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQNMQRRA 356 (573)
Q Consensus 283 R~~~~~~fr~g~--~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~----~~~e~~~~ 356 (573)
|+++...|.+.. .+||||||++|-|+|+.-.+|+||||+|.++.--=+||||.-|.|++-..-..| ...+...+
T Consensus 533 Rdraaa~Fa~~e~gaqVLI~TEagsEG~NLQF~~~LVnyDLPWNP~rLEQRIGRlDRiGQ~~dV~Ihvpy~~~s~q~~l~ 612 (955)
T PRK04914 533 RDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLF 612 (955)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 99999986176778519997252124503777435235258987658899852065427867507986202898899999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999850664105689999988889986554
Q gi|254780601|r 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388 (573)
Q Consensus 357 ~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~ 388 (573)
+.+.. +.+.-..+.|++..|.+.-...+..
T Consensus 613 ~wy~~--gl~af~~~~~~g~~v~~~~~~~l~~ 642 (955)
T PRK04914 613 RWYHE--GLNAFEHTCPTGRALYDEFGDELIP 642 (955)
T ss_pred HHHHH--HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99998--8889755691189999999999999
No 78
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.2e-20 Score=156.24 Aligned_cols=316 Identities=25% Similarity=0.304 Sum_probs=209.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 99999787987898999999999759969999289874689--9999999986104212255688279998499899999
Q gi|254780601|r 12 GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV--AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ 89 (573)
Q Consensus 12 ~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~--af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Q 89 (573)
.......||+ |-+.|+.+|-.+-+|..|++.|+||+|||. -|++.+. +. .+-+++..+|+..|..|
T Consensus 110 ~~~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a--l~---------~~qrviYTsPIKALsNQ 177 (1041)
T COG4581 110 APPAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA--LR---------DGQRVIYTSPIKALSNQ 177 (1041)
T ss_pred CCHHHHCCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH--HH---------CCCCEEECCCHHHHHHH
T ss_conf 8378748989-678999999998479957997337898555999999999--87---------18944861630664206
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 99999998544698799998899879999961289759982231013321000122464318999613110010012357
Q gi|254780601|r 90 VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169 (573)
Q Consensus 90 v~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i 169 (573)
.+.++........-.+....|..+ +..++.++|-|-.-|..|+-++.-.+..+.++|+||.--|=|+ ++.-+
T Consensus 178 Kyrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~V 249 (1041)
T COG4581 178 KYRDLLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVV 249 (1041)
T ss_pred HHHHHHHHHHHHHHHCCCEECCEE-------ECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCC-CCCHH
T ss_conf 799999986005654040105434-------2799966886099999986258610135306888766650463-22125
Q ss_pred -HHHHHHCCCCCCEEEEECCCCCCCHHHHHHH---CCCCCCCCCCCCCCCCCCCCHHCCC------CCCCH---------
Q ss_conf -8887521433422563111122200111121---0123333233323256652000000------00000---------
Q gi|254780601|r 170 -EFILDSSPKKRRMLMFSATISPAITTLAKNY---QKDAVRVNIASENRQHSDIDYRAVL------VALSD--------- 230 (573)
Q Consensus 170 -~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~---~~~p~~i~~~~~~~~~~~i~~~~~~------v~~~~--------- 230 (573)
+.++-.+|...|.+++|||+|+. .+++.=+ -..|..+. ..+...+|...++|.. +.+.-
T Consensus 250 WEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv-~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 250 WEEVIILLPDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVV-STEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCH-HHHHHHHHHCCCCCEEEE-EECCCCCCEEEEEECCCCEEEEECCCCCCHHHCCHH
T ss_conf 789998667777689996788987-999999974037874899-506888971798865875145354565301113433
Q ss_pred --------------------------------------HHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-----
Q ss_conf --------------------------------------2455420010235641677513023345655555422-----
Q gi|254780601|r 231 --------------------------------------RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH----- 267 (573)
Q Consensus 231 --------------------------------------k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~----- 267 (573)
+..-+.+.+...+.--+|+||=+++.|+..+..|...
T Consensus 328 a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 328 ANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred HHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCC
T ss_conf 43343022000135676543212333345677665655305777665440378528999736518999987503642158
Q ss_pred -----------------------CCC-------------CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf -----------------------666-------------30104899999999998665448814998538650014578
Q gi|254780601|r 268 -----------------------LFQ-------------VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311 (573)
Q Consensus 268 -----------------------g~~-------------~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~ 311 (573)
++. ....|++|-...+..+-.-|..|-++|+.||.+.|-||++|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCC
T ss_conf 82788899999999853472021275009999998760345402450368999999998604305775333464015784
Q ss_pred CCCEEE----EEC----CCCCHHHHHHHHCCCCCCCC--CCEEEEEEC
Q ss_conf 873389----705----88747899986030103788--860256405
Q gi|254780601|r 312 DLELVI----HAE----LSSNPENLLHRSGRTGRAGR--KGMSVFVIP 349 (573)
Q Consensus 312 ~v~~Vi----n~d----~P~~~~~yvHR~GRtgRag~--~G~ai~l~~ 349 (573)
.=+.|+ .|| -+-.+..|++=+||.||.|- .|++|+...
T Consensus 488 artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 488 ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred CCCEEEEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 001354655775488535658157777544430155654654999557
No 79
>KOG0950 consensus
Probab=99.88 E-value=2e-20 Score=156.59 Aligned_cols=340 Identities=20% Similarity=0.284 Sum_probs=221.4
Q ss_pred CCCHHHHHH-HHHCCCCCCCHHHHHHH--HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 998899999-99787987898999999--999759969999289874689999999998610421225568827999849
Q gi|254780601|r 6 NIPQVIGEA-LSERGYVNLTSVQEAIL--NPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 (573)
Q Consensus 6 ~l~~~l~~~-l~~~g~~~pt~iQ~~~i--p~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P 82 (573)
.+++.+... .+..|......-|..|+ |.+++++++|-.+||+-||||+--|=++..++.-... ++.+.|
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~--------~llilp 277 (1008)
T KOG0950 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRN--------VLLILP 277 (1008)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHC--------EEEECC
T ss_conf 384688889987644898999999871465342356558857876406799999999999887421--------167424
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHH----HHCCCCCCCCCEEEEEECCC
Q ss_conf 98999999999999854469879999889987999996128975998223101332----10001224643189996131
Q gi|254780601|r 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH----IRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 83 TrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~----~~~~~l~l~~v~~lVlDEaD 158 (573)
----+.--...+..++...|+.|-..+|+.+-.. ..+..++-|||-.+-.-+ ++.+ +++.+.++|+||-.
T Consensus 278 ~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElh 351 (1008)
T KOG0950 278 YVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELH 351 (1008)
T ss_pred EEEHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC----CCCCEEEEEEEHHHHHHHHHHHHHCC--CCCCCCCEEEEEEE
T ss_conf 2102587776400220335886221126689988----64410455420376676888887617--83304728975224
Q ss_pred CCCCCHHHHHHHHHHHHC-----CCCCCEEEEECCCCCCCHHHHHHHCCC--------CCCCC----CCCCCCC------
Q ss_conf 100100123578887521-----433422563111122200111121012--------33332----3332325------
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSS-----PKKRRMLMFSATISPAITTLAKNYQKD--------AVRVN----IASENRQ------ 215 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~-----p~~~q~~l~SAT~~~~i~~l~~~~~~~--------p~~i~----~~~~~~~------ 215 (573)
...|-|--.++|.++..+ ....|.+-.|||+|+. .+.+.|+.. |+... +...-..
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~ 429 (1008)
T KOG0950 352 MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKV 429 (1008)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH--HHHHHHHHHHHEECCCCCCCCHHCCCCCCCCCCCHHHHH
T ss_conf 640356355899999999996325634676552414774--889988643232046676430103677763012305677
Q ss_pred CCCCCHHCCCCCCCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHC--------------------------
Q ss_conf 6652000000000002455420010--235641677513023345655555422--------------------------
Q gi|254780601|r 216 HSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEH-------------------------- 267 (573)
Q Consensus 216 ~~~i~~~~~~v~~~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~-------------------------- 267 (573)
..+|...+......+-.+.+..+.. .-+..++||||.+|+.|+.++..+...
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 77754322220256797554421254652587179975764334778888988726766556654577788887576407
Q ss_pred ------------CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC----CCCHHHHHHH
Q ss_conf ------------666301048999999999986654488149985386500145788733897058----8747899986
Q gi|254780601|r 268 ------------LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL----SSNPENLLHR 331 (573)
Q Consensus 268 ------------g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~----P~~~~~yvHR 331 (573)
-+.+...|.++++.+|+-+-..||+|.+.|++||+..|=|.+.|....+|-.-. +.+.-.|.+.
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CCCCCHHHHEECCCCCEECCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 75445387602003533034446500688899999746769999434464068687511587477546230002467765
Q ss_pred HCCCCCCCC--CCEEEEEECHHHHHHHHHHHH
Q ss_conf 030103788--860256405999999999999
Q gi|254780601|r 332 SGRTGRAGR--KGMSVFVIPQNMQRRAERLFR 361 (573)
Q Consensus 332 ~GRtgRag~--~G~ai~l~~~~e~~~~~~i~~ 361 (573)
+|||||+|- .|.||+++.+.|..++..+.+
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 30200033465765589850333567788871
No 80
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.86 E-value=1.9e-18 Score=143.17 Aligned_cols=327 Identities=20% Similarity=0.296 Sum_probs=201.8
Q ss_pred HHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHHHHCCCEEE
Q ss_conf 9999997-599699992898746899999999986104212255688279998499899999999999-98544698799
Q gi|254780601|r 29 AILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVA 106 (573)
Q Consensus 29 ~~ip~~l-~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~-~l~~~~~~~v~ 106 (573)
.-|-..+ +..=+|+...||||||. -||-+ ++.. .. ...-...+--|-|--|.-|++-+. -++..+|-.|.
T Consensus 80 ~~i~~~i~~nqVvii~GeTGsGKTT--QiPq~--~le~-g~---g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VG 151 (1295)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKI--CLEL-GR---GIKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1295)
T ss_pred HHHHHHHHHCCEEEEECCCCCCHHH--HHHHH--HHHC-CC---CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999979969997689998788--99999--9962-79---999989977965999999999999981999899888
Q ss_pred EEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-CCCCHHH-HHHHHHHHHCCCCCCEEE
Q ss_conf 99889987999996128975998223101332100012246431899961311-0010012-357888752143342256
Q gi|254780601|r 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-MLDLGFR-DDIEFILDSSPKKRRMLM 184 (573)
Q Consensus 107 ~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-ml~~gf~-~~i~~i~~~~p~~~q~~l 184 (573)
--+.- +. .......|.++|.|-|+..+... -.|+.+.++|||||-+ -|+.-|. .-++.++..-|+ -..++
T Consensus 152 Y~VRf---~~---~~s~~t~i~~~TdGiLL~e~~~d-~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~d-LKvIi 223 (1295)
T PRK11131 152 YKVRF---ND---QVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPD-LKVII 223 (1295)
T ss_pred EEECC---CC---CCCCCCEEEEECCHHHHHHHHHC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-CEEEE
T ss_conf 89456---98---87999779997656999986209-9878877799868556880199999999999833999-88999
Q ss_pred EECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCC-C-----CCHHHHHHHHCC---CCCCCCEEEEECCCHH
Q ss_conf 311112220011112101233332333232566520000000-0-----000245542001---0235641677513023
Q gi|254780601|r 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A-----LSDRDNAIVNIL---RYHGAKNAIVFCSTRA 255 (573)
Q Consensus 185 ~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v-~-----~~~k~~~l~~ll---~~~~~~~~ivF~~t~~ 255 (573)
+|||+..+ .+++ |+.++-.|.+....-.+ +-+|-.. . ..+....+...+ ..+.+..++||.....
T Consensus 224 mSATid~e--~fs~-yF~~apvi~v~Gr~~PV---ev~y~p~~~~~~~~~~d~~~~i~~~v~~~~~~~~GdILVFLpG~~ 297 (1295)
T PRK11131 224 TSATIDPE--RFSR-HFNNAPIIEVSGRTYPV---EVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGER 297 (1295)
T ss_pred ECCCCCHH--HHHH-HCCCCCEEEECCCCCCE---EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 55868979--9996-57999989878917886---757636866544215899999999999985489987798669799
Q ss_pred HHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC----------
Q ss_conf 3456555554226---663010489999999999866544881499853865001457887338970588----------
Q gi|254780601|r 256 SVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS---------- 322 (573)
Q Consensus 256 ~~~~l~~~L~~~g---~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P---------- 322 (573)
+...+++.|...+ +.+.+|||.++..+...+++- .|.-+|++||+||.=.|-||+|.+||--.+-
T Consensus 298 EI~~~~~~L~~~~~~~~~ilPL~s~ls~~eQ~~vF~p--~~~RkIVlaTNIAETSlTIp~I~yVIDsG~~k~~~y~~~~~ 375 (1295)
T PRK11131 298 EIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1295)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCC--CCCCEEEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCC
T ss_conf 9999999986148988769865578999999998488--99733898405200010005648999378401004757778
Q ss_pred --------CCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHH--------------HHHH--HHHH----CCCCCCCCCC
Q ss_conf --------7478999860301037888602564059999999--------------9999--9850----6641056899
Q gi|254780601|r 323 --------SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA--------------ERLF--REAN----VSVVWEPAPS 374 (573)
Q Consensus 323 --------~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~--------------~~i~--~~~~----~~~~~~~~Ps 374 (573)
-+-.+--+|.||+||- ..|+|+-||+..+.... .-|. +..+ ..|.+...|+
T Consensus 376 ~~~L~~~~iSqAsA~QR~GRaGR~-~~G~C~RLyse~~~~~~p~~t~PEIlR~~L~~viLqm~~lgl~~i~~F~f~dpP~ 454 (1295)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPD 454 (1295)
T ss_pred CCEEEEEEECHHHHHHHHHHHCCC-CCCEEEEEECHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 664667870165698750540788-9953999835988852877899867416679999999864899914588999999
Q ss_pred HHHHHH
Q ss_conf 999888
Q gi|254780601|r 375 VEAIRE 380 (573)
Q Consensus 375 ~eeI~~ 380 (573)
.+.|..
T Consensus 455 ~~~i~~ 460 (1295)
T PRK11131 455 KRNIQD 460 (1295)
T ss_pred HHHHHH
T ss_conf 899999
No 81
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.85 E-value=4.1e-18 Score=140.97 Aligned_cols=130 Identities=19% Similarity=0.303 Sum_probs=108.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 23564167751302334565555542266630104899999999998665448814998538650014578873389705
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
.....+++|-+-||+.++.|+++|...|+++..||+++..-+|..++.++|.|.++|||.-+++--|||+|.|++|.-+|
T Consensus 443 ~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 443 VAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred HHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEE
T ss_conf 96497299984368889999999986696478642440389999999997577874898501331347886455798860
Q ss_pred CC-----CCHHHHHHHHCCCCCCCCCCEEEEEEC---HH--------HHHHHHHHHHHHHCCCCCCC
Q ss_conf 88-----747899986030103788860256405---99--------99999999998506641056
Q gi|254780601|r 321 LS-----SNPENLLHRSGRTGRAGRKGMSVFVIP---QN--------MQRRAERLFREANVSVVWEP 371 (573)
Q Consensus 321 ~P-----~~~~~yvHR~GRtgRag~~G~ai~l~~---~~--------e~~~~~~i~~~~~~~~~~~~ 371 (573)
.- .+..+.++-|||++| +-.|.+|.+.. .+ ++++-.+++-.-...|...+
T Consensus 523 ADKeGFLRse~SLIQtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~t 588 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQT 588 (663)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6854443453259999878863-57973999710114999999998888999999999966999712
No 82
>KOG0947 consensus
Probab=99.85 E-value=3e-19 Score=148.65 Aligned_cols=306 Identities=20% Similarity=0.286 Sum_probs=203.9
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 787987898999999999759969999289874689--999999998610421225568827999849989999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV--AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~--af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~ 94 (573)
...|+ |-+-|++||-++..|..|.+.|+|-+|||+ -|++.+.++ ...+++.-+|-..|..|-+..|
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-----------h~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947 293 IYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-----------HMTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred HCCCC-CCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHH-----------HCCCEEECCHHHHHCCCHHHHH
T ss_conf 18877-66789999999972781799713778843699999999886-----------3551575263465400157888
Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHH----
Q ss_conf 9985446987999988998799999612897599822310133210001224643189996131100100123578----
Q gi|254780601|r 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE---- 170 (573)
Q Consensus 95 ~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~---- 170 (573)
+.-....| .+.|... +..-+..+|-|-.-|..|+-+|.=-..+|.|+|+||+- |..|++
T Consensus 361 k~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH------YiND~eRGvV 423 (1248)
T KOG0947 361 KETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH------YINDVERGVV 423 (1248)
T ss_pred HHHCCCCC----EEECCEE-------ECCCCCEEEEHHHHHHHHHHCCCCHHHCCCEEEEEEEE------ECCCCCCCCC
T ss_conf 77426665----4514433-------27775467656999999875155432113369874035------4144135622
Q ss_pred --HHHHHCCCCCCEEEEECCCCCC------CHHHHHH--H----CCCCCCCCC--CCCCCCC------------------
Q ss_conf --8875214334225631111222------0011112--1----012333323--3323256------------------
Q gi|254780601|r 171 --FILDSSPKKRRMLMFSATISPA------ITTLAKN--Y----QKDAVRVNI--ASENRQH------------------ 216 (573)
Q Consensus 171 --~i~~~~p~~~q~~l~SAT~~~~------i~~l~~~--~----~~~p~~i~~--~~~~~~~------------------ 216 (573)
+++-.+|...+.+|.|||+|+. |-++-++ | .+.|+-+.. -.++.-.
T Consensus 424 WEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~ 503 (1248)
T KOG0947 424 WEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAK 503 (1248)
T ss_pred CEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCEEHHHCCCCHHHHHCCHHHH
T ss_conf 10122532554159998465798188888750404853899714788643078998666310001544143553010111
Q ss_pred -------------------------CCCCHHCCCC------CCCHHH--HHHHHCC---CCCCCCEEEEECCCHHHHHHH
Q ss_conf -------------------------6520000000------000024--5542001---023564167751302334565
Q gi|254780601|r 217 -------------------------SDIDYRAVLV------ALSDRD--NAIVNIL---RYHGAKNAIVFCSTRASVSRF 260 (573)
Q Consensus 217 -------------------------~~i~~~~~~v------~~~~k~--~~l~~ll---~~~~~~~~ivF~~t~~~~~~l 260 (573)
..-++-+..- ...++. .....++ ...+---+||||=+|+.|++-
T Consensus 504 ~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~ 583 (1248)
T KOG0947 504 DSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEY 583 (1248)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 12224444331325445466655466776788888766666543234444099999998522467669999735657899
Q ss_pred HHHHHHCCCCCC---------------------------------------CCCCCCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 555542266630---------------------------------------10489999999999866544881499853
Q gi|254780601|r 261 TKVLAEHLFQVV---------------------------------------ALSGELSQQERSNALQMMRDGRARVCIAT 301 (573)
Q Consensus 261 ~~~L~~~g~~~~---------------------------------------~lhg~~~q~~R~~~~~~fr~g~~~vLV~T 301 (573)
+++|....+... ..||++-.--.+-+.--|..|-++||+||
T Consensus 584 a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947 584 ADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 99975557665212789999999999866854314337788999986140330366307899999999755854788641
Q ss_pred CCCCCCCCCCCCCEEEEECCC--------CCHHHHHHHHCCCCCCC--CCCEEEEEECHH
Q ss_conf 865001457887338970588--------74789998603010378--886025640599
Q gi|254780601|r 302 DVAARGIDLPDLELVIHAELS--------SNPENLLHRSGRTGRAG--RKGMSVFVIPQN 351 (573)
Q Consensus 302 DvaaRGiDi~~v~~Vin~d~P--------~~~~~yvHR~GRtgRag--~~G~ai~l~~~~ 351 (573)
.-.|.|++.|.=+.||.-=.- -.+-.|++=+||+||-| .+|+.|.+....
T Consensus 664 ETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947 664 ETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHHCCCCCEEEEEEEHHHCCCCCEEECCCHHHHHHHCCCCCCCCCCCCEEEEEECCC
T ss_conf 056511688740677330001368642543870577641102445668676089996688
No 83
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.85 E-value=8.5e-19 Score=145.58 Aligned_cols=326 Identities=24% Similarity=0.326 Sum_probs=204.6
Q ss_pred HHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHHHHCCCEEEEE
Q ss_conf 99997-59969999289874689999999998610421225568827999849989999999999-99854469879999
Q gi|254780601|r 31 LNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVC 108 (573)
Q Consensus 31 ip~~l-~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~-~~l~~~~~~~v~~~ 108 (573)
|-.++ +..=+|+.++||||||...-.-+++... ...-...+.-|-|--|.-+++-+ ..++...|-.|.
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG-- 127 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG-- 127 (845)
T ss_pred HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHC--------CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEE--
T ss_conf 9999986978998679988758788999996001--------668759965843899999999999983898676543--
Q ss_pred ECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-CC----CCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 889987999996128975998223101332100012246431899961311-00----1001235788875214334225
Q gi|254780601|r 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-ML----DLGFRDDIEFILDSSPKKRRML 183 (573)
Q Consensus 109 ~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-ml----~~gf~~~i~~i~~~~p~~~q~~ 183 (573)
-++.-+ ........|-+-|-|-|+..+....+ |+.+.++|+|||-+ -| -||+ +..++...+++-..+
T Consensus 128 ---Y~iRfe-~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgl---lk~~~~~rr~DLKiI 199 (845)
T COG1643 128 ---YSIRFE-SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGL---LKDLLARRRDDLKLI 199 (845)
T ss_pred ---EEEEEE-CCCCCCCEEEEECCHHHHHHHHHCCC-CCCCCEEEEECHHHHHHHHHHHHHH---HHHHHHHCCCCCEEE
T ss_conf ---799962-26787714689514799999843802-0458779970133556888999999---999986468870599
Q ss_pred EEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-H-HHHHHHHCC---CCCCCCEEEEECCCHHHHH
Q ss_conf 6311112220011112101233332333232566520000000000-0-245542001---0235641677513023345
Q gi|254780601|r 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-D-RDNAIVNIL---RYHGAKNAIVFCSTRASVS 258 (573)
Q Consensus 184 l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~-~-k~~~l~~ll---~~~~~~~~ivF~~t~~~~~ 258 (573)
++|||+..+ ++++ |++++-.+.+....- | ++-+|...... + -.+++...+ ..+.+...+||..-..+.+
T Consensus 200 imSATld~~--rfs~-~f~~apvi~i~GR~f--P-Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~ 273 (845)
T COG1643 200 IMSATLDAE--RFSA-YFGNAPVIEIEGRTY--P-VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIE 273 (845)
T ss_pred EEECCCCHH--HHHH-HCCCCCEEEECCCCC--C-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHH
T ss_conf 972535889--9997-628998787558866--4-478865777751369999999999963689998899778689999
Q ss_pred HHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC-------------
Q ss_conf 65555542----2666301048999999999986654488149985386500145788733897058-------------
Q gi|254780601|r 259 RFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL------------- 321 (573)
Q Consensus 259 ~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~------------- 321 (573)
.+++.|.. ..+.+.+|||.|+.++..++++---.|+-+|.+||+||.=+|-|++|..||-=.+
T Consensus 274 ~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~ 353 (845)
T COG1643 274 RTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLT 353 (845)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEECCEEEEEECCCCCCCCCCCCCCCE
T ss_conf 99999973244788389404035998999866287888860499975140013115785899848825210035134852
Q ss_pred -----CCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHH----------------HHHHHHHC-----CCCCCCCCCH
Q ss_conf -----874789998603010378886025640599999999----------------99998506-----6410568999
Q gi|254780601|r 322 -----SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE----------------RLFREANV-----SVVWEPAPSV 375 (573)
Q Consensus 322 -----P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~----------------~i~~~~~~-----~~~~~~~Ps~ 375 (573)
|-+-.+..+|.||+||- .+|+|+=|++.++...+. --.+..|. .+.+...|..
T Consensus 354 ~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~ 432 (845)
T COG1643 354 RLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPE 432 (845)
T ss_pred EEEEEEECHHHHHHHCCCCCCC-CCCEEEEECCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 6667875053233434554577-785289944799987362279917753352899999996699888766867789975
Q ss_pred HHHHHH
Q ss_conf 998888
Q gi|254780601|r 376 EAIRER 381 (573)
Q Consensus 376 eeI~~~ 381 (573)
..+...
T Consensus 433 ~~i~~A 438 (845)
T COG1643 433 AAIQAA 438 (845)
T ss_pred HHHHHH
T ss_conf 899999
No 84
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.85 E-value=2.8e-20 Score=155.60 Aligned_cols=290 Identities=19% Similarity=0.287 Sum_probs=181.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHH---HHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH----HHHHCCCEEEEEECC
Q ss_conf 6999928987468999999999---861042122556882799984998999999999999----854469879999889
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW----LYAKTGVVVAVCIGG 111 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~---~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~----l~~~~~~~v~~~~gg 111 (573)
.+|+.||||.|||-+=++=+.+ .++.... -++++.-|||-.+.-+++-+.. +.+..+. ....++
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~~~-------~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~--~~~~~s 71 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQKA-------DKVIFALPTRVTINAMYRRLKESASHLFGSPEL--VLLLHS 71 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH-------CCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCC
T ss_conf 96886178998789999999863666422444-------010122026888999999999867754178543--233455
Q ss_pred CCH--HHHH---HHHC----------------CC------CEEEEECCCCHHHHHHC---CCCC-----CC--CCEEEEE
Q ss_conf 987--9999---9612----------------89------75998223101332100---0122-----46--4318999
Q gi|254780601|r 112 VSV--HRER---RDLQ----------------NG------AHIVVGTPGRLCDHIRG---KGLN-----IS--HLKAVVL 154 (573)
Q Consensus 112 ~~~--~~q~---~~l~----------------~~------~~iiv~TPgrl~d~~~~---~~l~-----l~--~v~~lVl 154 (573)
..+ ..+. +... .+ -.|=||||..++-.+-. |.+. +. ....||+
T Consensus 72 srfnh~~~~ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~ 151 (424)
T TIGR01587 72 SRFNHLASSIKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIF 151 (424)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 22678999999877630478279999998522421210131788534122000000553445205688887777676562
Q ss_pred ECCCCCCCCHHHHH-HHHHHHHCC--CCCCEEEEECCCCCCCHHHHHHHCCCCCCCC----CCCCC------------CC
Q ss_conf 61311001001235-788875214--3342256311112220011112101233332----33323------------25
Q gi|254780601|r 155 DEADEMLDLGFRDD-IEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVN----IASEN------------RQ 215 (573)
Q Consensus 155 DEaD~ml~~gf~~~-i~~i~~~~p--~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~----~~~~~------------~~ 215 (573)
||++-..+. -..- +...|..+- .+...+|+|||+|....++.++|..+-..+. ...+. ..
T Consensus 152 DE~h~y~~~-~~~~~~l~~L~~~~~~~~~~~~lMsATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GvnGaqrfdlla 230 (424)
T TIGR01587 152 DEVHAYEEY-TLALTILAALEVLKIDNDVKILLMSATLPRELKKFLKEYLEKIEYVEENELLDLKEVEGVNGAQRFDLLA 230 (424)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 536777642-5555699999999987389889984056757899999873104763333557866435464202333321
Q ss_pred CC-----CC-CHHCCCCCCC--HHHHHHHHC-CC-CCCCCEEEEECCCHHHHHHHHHHHHHCCCC---CCCCCCCCCHHH
Q ss_conf 66-----52-0000000000--024554200-10-235641677513023345655555422666---301048999999
Q gi|254780601|r 216 HS-----DI-DYRAVLVALS--DRDNAIVNI-LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQ---VVALSGELSQQE 282 (573)
Q Consensus 216 ~~-----~i-~~~~~~v~~~--~k~~~l~~l-l~-~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~---~~~lhg~~~q~~ 282 (573)
|| .. ++.+..+... .....|.++ |+ .....+.+|+|||...+.+++..|.+.+-. +.-|||-+.+..
T Consensus 231 hPe~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~D 310 (424)
T TIGR01587 231 HPEFKEKRFENHRISLIEKDKVGEISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKD 310 (424)
T ss_pred CCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
T ss_conf 72021002215764213432033134666677874157786699985438999999998512652002124404477003
Q ss_pred HH------HHHHHHHC-----CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99------99866544-----8814998538650014578873389705887478999860301037888
Q gi|254780601|r 283 RS------NALQMMRD-----GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341 (573)
Q Consensus 283 R~------~~~~~fr~-----g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~ 341 (573)
|. ..|..|++ +.-.|+|+|-|..-|+||+ +|+.|-=-+| +++.+||.||..|.|++
T Consensus 311 R~~KEde~~~l~e~~~S~~~~~~~~v~V~TQv~E~SlD~s-~D~~iTe~aP--~d~LiQR~GR~~R~~~~ 377 (424)
T TIGR01587 311 RAKKEDEAELLKELKKSAWKDNEKFVIVATQVIEVSLDIS-VDVMITELAP--IDSLIQRLGRLNRYGRK 377 (424)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECC-CCHHHHHCCC--HHHHHHHHHHHCCCCCC
T ss_conf 6677679999998510135445770699878788864204-4413431150--12335542111011356
No 85
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=2e-18 Score=143.09 Aligned_cols=328 Identities=21% Similarity=0.332 Sum_probs=190.7
Q ss_pred CHHHHHHHHHCCCC----------------------CCCHHHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 88999999978798----------------------7898999999999759----969999289874689999999998
Q gi|254780601|r 8 PQVIGEALSERGYV----------------------NLTSVQEAILNPDLRE----KDVLVSAQTGSGKTVAFGLALAST 61 (573)
Q Consensus 8 ~~~l~~~l~~~g~~----------------------~pt~iQ~~~ip~~l~g----~d~i~~a~TGsGKT~af~lp~l~~ 61 (573)
+...+++|.+.|+. ..++-|+.+...+... +-.+...-||||||..|+ .++..
T Consensus 162 s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~ 240 (730)
T COG1198 162 SLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAK 240 (730)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH-HHHHH
T ss_conf 38989888765735653036777522346565431103889999999999750566653676777885899999-99999
Q ss_pred HHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHCC-CCEEEEECCCCHHH
Q ss_conf 6104212255688279998499899999999999985446987999988998799---9996128-97599822310133
Q gi|254780601|r 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQN-GAHIVVGTPGRLCD 137 (573)
Q Consensus 62 l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~---q~~~l~~-~~~iiv~TPgrl~d 137 (573)
.+.. +-|+|||+|--.|--|+.+.|+... +.+++.+.+|-+-.+ ....... .+.|||||=--|.
T Consensus 241 ~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF- 308 (730)
T COG1198 241 VLAQ--------GKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF- 308 (730)
T ss_pred HHHC--------CCEEEEEECCCCCHHHHHHHHHHHH---CCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC-
T ss_conf 9975--------9879999565345699999999986---787453146579278999999985597159997122330-
Q ss_pred HHHCCCCCCCCCEEEEEECC-CCCCCC--HH---HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 21000122464318999613-110010--01---2357888752143342256311112220011112101233332333
Q gi|254780601|r 138 HIRGKGLNISHLKAVVLDEA-DEMLDL--GF---RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 (573)
Q Consensus 138 ~~~~~~l~l~~v~~lVlDEa-D~ml~~--gf---~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~ 211 (573)
+-+.++..+|+||= |-.... +. .-|+-. +..--.+...+|-||| +.++.+.+--......+.+..
T Consensus 309 ------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~-~Ra~~~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~ 379 (730)
T COG1198 309 ------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV-LRAKKENAPVVLGSAT--PSLESYANAESGKYKLLRLTN 379 (730)
T ss_pred ------CCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCCEEEECCC--CCHHHHHHHHCCCEEEEECCC
T ss_conf ------7231257699702456432477777767899999-9988609988982688--778999866538558997035
Q ss_pred C-C-CCCCCCCHHCCCCCCC--HHH----HHHHHCC--CCCCCCEEEEECCC----------------------------
Q ss_conf 2-3-2566520000000000--024----5542001--02356416775130----------------------------
Q gi|254780601|r 212 E-N-RQHSDIDYRAVLVALS--DRD----NAIVNIL--RYHGAKNAIVFCST---------------------------- 253 (573)
Q Consensus 212 ~-~-~~~~~i~~~~~~v~~~--~k~----~~l~~ll--~~~~~~~~ivF~~t---------------------------- 253 (573)
. + ...+.+. ++..... +.- ..|.+-+ .....+++|+|.|.
T Consensus 380 R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H 457 (730)
T COG1198 380 RAGRARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLH 457 (730)
T ss_pred CCCCCCCCCCE--EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 45556787625--8735666554677579999999999984298689997167765400425689802489999512786
Q ss_pred --------------------------------HHHHHHHHHHHHHC--CCCCCCCCCCCCHHH--HHHHHHHHHCCCEEE
Q ss_conf --------------------------------23345655555422--666301048999999--999986654488149
Q gi|254780601|r 254 --------------------------------RASVSRFTKVLAEH--LFQVVALSGELSQQE--RSNALQMMRDGRARV 297 (573)
Q Consensus 254 --------------------------------~~~~~~l~~~L~~~--g~~~~~lhg~~~q~~--R~~~~~~fr~g~~~v 297 (573)
...++++.+.|... +..+..+.+|..... =...++.|.+|+.+|
T Consensus 458 ~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dI 537 (730)
T COG1198 458 KATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADI 537 (730)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 47980670779998998877989999736996461999999999878999479984666664356899999975799886
Q ss_pred EEECCCCCCCCCCCCCCEEEEECC------CC------CHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH
Q ss_conf 985386500145788733897058------87------478999860301037888602564059999999999
Q gi|254780601|r 298 CIATDVAARGIDLPDLELVIHAEL------SS------NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 (573)
Q Consensus 298 LV~TDvaaRGiDi~~v~~Vin~d~------P~------~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i 359 (573)
||.|-..|-|.|+|+|++|.-.|. |+ ....|++=+||+||++++|..+.=....|...++.+
T Consensus 538 LiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 538 LIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred EECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 63416664278866631899996314315888435789999999997553267889869999679985799999
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.84 E-value=1e-17 Score=138.35 Aligned_cols=323 Identities=22% Similarity=0.275 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 988999999978798---------------------7898999999999759---9699992898746899999999986
Q gi|254780601|r 7 IPQVIGEALSERGYV---------------------NLTSVQEAILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 7 l~~~l~~~l~~~g~~---------------------~pt~iQ~~~ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
.+...++.|.+.|+. .+|+-|..++..+.+. +-.+...-||||||.-| +.++...
T Consensus 132 ~s~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevY-l~li~~~ 210 (699)
T PRK05580 132 VSASVLKGLAKKGLIEIVERPPLRLRDPPDPDTEPPTLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVY-LQAIAEA 210 (699)
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHHHHH
T ss_conf 988999999978971675321456543344456787889999999999985588871787478986079999-9999999
Q ss_pred HCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH---HHHH-CCCCEEEEECCCCHHHH
Q ss_conf 1042122556882799984998999999999999854469879999889987999---9961-28975998223101332
Q gi|254780601|r 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE---RRDL-QNGAHIVVGTPGRLCDH 138 (573)
Q Consensus 63 ~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q---~~~l-~~~~~iiv~TPgrl~d~ 138 (573)
+.. +-|+|||+|.-.|..|+.+.++.. .+..++.+.++.+-.+. ...+ ...+.|||||-.-+.
T Consensus 211 l~~--------GkqvLiLvPEI~lt~q~~~rl~~~---fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF-- 277 (699)
T PRK05580 211 LAQ--------GKQALVLVPEIALTPQLLARFRAR---FGARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF-- 277 (699)
T ss_pred HHC--------CCCEEEEECCHHHHHHHHHHHHHH---HCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE--
T ss_conf 973--------997899917678789999999987---0995799648898579999999997699719997360110--
Q ss_pred HHCCCCCCCCCEEEEEEC-CCCCCCC--HHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH-----------HHC
Q ss_conf 100012246431899961-3110010--012---35788875214334225631111222001111-----------210
Q gi|254780601|r 139 IRGKGLNISHLKAVVLDE-ADEMLDL--GFR---DDIEFILDSSPKKRRMLMFSATISPAITTLAK-----------NYQ 201 (573)
Q Consensus 139 ~~~~~l~l~~v~~lVlDE-aD~ml~~--gf~---~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~-----------~~~ 201 (573)
+-+.++..+|+|| .|.-... +.. -|+-... .--.+...+|-|||-+-+....++ ++.
T Consensus 278 -----aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~R-a~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~ 351 (699)
T PRK05580 278 -----APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLR-AKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAG 351 (699)
T ss_pred -----CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHH-HHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCC
T ss_conf -----657898489997365454446668761199999999-99849988961689999999999759976644653223
Q ss_pred CC--CC--CCCCCCCCCCC-CCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC-----------------------
Q ss_conf 12--33--33233323256-6520000000000024554200102356416775130-----------------------
Q gi|254780601|r 202 KD--AV--RVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST----------------------- 253 (573)
Q Consensus 202 ~~--p~--~i~~~~~~~~~-~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t----------------------- 253 (573)
.. |. .|+........ ..+... -.+.+.+-| ...+++|||.|.
T Consensus 352 ~~~~P~v~ivDm~~~~~~~~~~ls~~--------l~~~i~~~L--~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~ 421 (699)
T PRK05580 352 AAALPRVEIIDMREEPLERGAGLSPP--------LLEAIREAL--ERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDG 421 (699)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHH--------HHHHHHHHH--HCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCC
T ss_conf 47898379335421410025754699--------999999999--73884799954775225147453199456567898
Q ss_pred -------------------------------------HHHHHHHHHHHHHC--CCCCCCCCCCC--CHHHHHHHHHHHHC
Q ss_conf -------------------------------------23345655555422--66630104899--99999999866544
Q gi|254780601|r 254 -------------------------------------RASVSRFTKVLAEH--LFQVVALSGEL--SQQERSNALQMMRD 292 (573)
Q Consensus 254 -------------------------------------~~~~~~l~~~L~~~--g~~~~~lhg~~--~q~~R~~~~~~fr~ 292 (573)
...++.+.+.|... +.++..+.+|. ....-..++++|.+
T Consensus 422 ~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~ 501 (699)
T PRK05580 422 PLTLHRAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFAR 501 (699)
T ss_pred EEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHC
T ss_conf 63420689833226468836575546567997524111685999999997789998899847556786316889999746
Q ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEECC------CC--CHH----HHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH
Q ss_conf 88149985386500145788733897058------87--478----999860301037888602564059999999999
Q gi|254780601|r 293 GRARVCIATDVAARGIDLPDLELVIHAEL------SS--NPE----NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 (573)
Q Consensus 293 g~~~vLV~TDvaaRGiDi~~v~~Vin~d~------P~--~~~----~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i 359 (573)
|+.+|||.|-..|.|.|+|+|++|+-.|. |+ ..| -+++=+||+||..+.|..|.-....+...++.+
T Consensus 502 ~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQt~~p~~~~~~~l 580 (699)
T PRK05580 502 GEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQTYEPEHPLLQAL 580 (699)
T ss_pred CCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 8987897773345567777626998732265354888347999999999998765567889879999379998999999
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.84 E-value=8.3e-18 Score=138.93 Aligned_cols=308 Identities=18% Similarity=0.265 Sum_probs=201.1
Q ss_pred CCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 78989999999997----59969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 22 NLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
.+||-|+.+-..++ +..|+++.|-||+|||-- ..+.++..+.. +-.+.|-+|--..|.-++.-++.-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHHHHHHHC--------CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 327247899999999987157689997427985101-69999999965--------986998468610117778999976
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHH-HHH
Q ss_conf 54469879999889987999996128975998223101332100012246431899961311001001235--788-875
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEF-ILD 174 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~-i~~ 174 (573)
+.++.+.++||+.+-.- ..++||+|---|+.. -+...++++||+|-. -|.+| +.. +-+
T Consensus 168 --F~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAF---P~~~d~~L~~Av~~ 228 (441)
T COG4098 168 --FSNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAF---PFSDDQSLQYAVKK 228 (441)
T ss_pred --HCCCCEEEEECCCCHHC-------CCCEEEEEHHHHHHH-------HHHCCEEEEECCCCC---CCCCCHHHHHHHHH
T ss_conf --21498666725871313-------344799766888888-------864338998302456---56678889999997
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH-------HHHHHCCCCC--CCC
Q ss_conf 2143342256311112220011112101233332333232566520000000000024-------5542001023--564
Q gi|254780601|r 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILRYH--GAK 245 (573)
Q Consensus 175 ~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~-------~~l~~ll~~~--~~~ 245 (573)
...++.-++..|||=|++..+-+.. .+-..+.+...-...|..--.|+.+..-+|. ..|.+.|+.. ...
T Consensus 229 ark~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 229 ARKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHH--CCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 5123673699964880788887540--77567634465438998987428864477776644477899999999874388
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCC-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE-EEEECCC
Q ss_conf 167751302334565555542-2666-301048999999999986654488149985386500145788733-8970588
Q gi|254780601|r 246 NAIVFCSTRASVSRFTKVLAE-HLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL-VIHAELS 322 (573)
Q Consensus 246 ~~ivF~~t~~~~~~l~~~L~~-~g~~-~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~-Vin~d~P 322 (573)
.++||+++....+.+++.|.. .++. ..+.|+.- ..|...++.||+|++.+||+|.++.||.-+|+|+. |+.-+-+
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEECCCCC
T ss_conf 28999250588999999998618864215653367--0178999998758638999844033266435623999547764
Q ss_pred -CCHHHHHHHHCCCCCCC--CCCEEEEEEC---HHHHHHHHHHHH
Q ss_conf -74789998603010378--8860256405---999999999999
Q gi|254780601|r 323 -SNPENLLHRSGRTGRAG--RKGMSVFVIP---QNMQRRAERLFR 361 (573)
Q Consensus 323 -~~~~~yvHR~GRtgRag--~~G~ai~l~~---~~e~~~~~~i~~ 361 (573)
.+.++.|+=+||+||-- -.|..+.|-- .+.....++|.+
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~ 429 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKE 429 (441)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 201889999752316787689875899964633899999999999
No 88
>PRK09694 hypothetical protein; Provisional
Probab=99.81 E-value=2.3e-17 Score=136.00 Aligned_cols=307 Identities=18% Similarity=0.202 Sum_probs=180.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 87898999999999759969999289874689999999998610421225568827999849989999999999998544
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~ 100 (573)
..|+|+|+.+...-..-.=+|+.|+||+|||-|-++ ..+++..... .--..+..||+.-+.+.++-+..+...
T Consensus 287 ~~PrplQ~~~~~l~~~PgL~IiEAptG~GKTEAAL~-~A~~L~~~~~------~~Gl~faLPT~ATaNaMf~Rv~~~~~~ 359 (878)
T PRK09694 287 YQPRQLQTLVDALPLAPGLTVIEAPTGSGKTETALA-YAWKLIDQQL------ADSVIFALPTQATANAMLSRMEAAASK 359 (878)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HHHHHHHHCC------CCCEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 999679999984567998799975899975899999-9999997348------983699774798899999999999997
Q ss_pred --CCCEEEEEECCCCHHHHHHHH-------------------------CCC--CEEEEECCCCHHH-HHHCCC-----CC
Q ss_conf --698799998899879999961-------------------------289--7599822310133-210001-----22
Q gi|254780601|r 101 --TGVVVAVCIGGVSVHRERRDL-------------------------QNG--AHIVVGTPGRLCD-HIRGKG-----LN 145 (573)
Q Consensus 101 --~~~~v~~~~gg~~~~~q~~~l-------------------------~~~--~~iiv~TPgrl~d-~~~~~~-----l~ 145 (573)
..-.+..+.|...+......+ |++ +.+.|||+.-++- -+..+. +-
T Consensus 360 ~~~~~~v~LaHg~a~l~~~~~~l~~~~~~~~~~~~~~~~~~~W~~~~~Kr~LLap~~VGTiDQaLla~L~~kH~~LR~~g 439 (878)
T PRK09694 360 LFPSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGLG 439 (878)
T ss_pred HCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHH
T ss_conf 36899769744736550566651013676544543015777664111022313771546799999987461489999998
Q ss_pred CCCCEEEEEECCCCCCCCHH-HHHHHHHHHHCC-CCCCEEEEECCCCCCCH-HHHHHHCCCCCC---------CCCCCCC
Q ss_conf 46431899961311001001-235788875214-33422563111122200-111121012333---------3233323
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGF-RDDIEFILDSSP-KKRRMLMFSATISPAIT-TLAKNYQKDAVR---------VNIASEN 213 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf-~~~i~~i~~~~p-~~~q~~l~SAT~~~~i~-~l~~~~~~~p~~---------i~~~~~~ 213 (573)
|. =+.+|+||+.-. |. | ..-++.+|+.+. -....+|.|||||.... +|++.|-..... |+.....
T Consensus 440 La-~kvvIiDEVHAY-D~-Ym~~lL~~lL~wl~~~g~~viLLSATLP~~~R~~L~~ay~~~~~~~~~~~~YP~it~~~~~ 516 (878)
T PRK09694 440 IG-RSVLIVDEVHAY-DA-YMNGLLEAVLKAQAQVGGSVILLSATLPMTQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 516 (878)
T ss_pred HC-CCEEEEECCCCC-CH-HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCC
T ss_conf 62-874897253334-58-8999999999999983998899927898999999999755688766667788613631556
Q ss_pred C--CCCCCCH-----HCCCC-----CC-CHHHHHHHHCCC-CCCCCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCC
Q ss_conf 2--5665200-----00000-----00-002455420010-2356416775130233456555554226---66301048
Q gi|254780601|r 214 R--QHSDIDY-----RAVLV-----AL-SDRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSG 276 (573)
Q Consensus 214 ~--~~~~i~~-----~~~~v-----~~-~~k~~~l~~ll~-~~~~~~~ivF~~t~~~~~~l~~~L~~~g---~~~~~lhg 276 (573)
. ......+ .-+.+ .. ..-...+.++++ ..+...++|.|||...+.+++..|...+ ..+.-+|+
T Consensus 517 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~G~~v~vI~NTV~rAq~~y~~L~~~~~~~~~v~L~Hs 596 (878)
T PRK09694 517 GAQRFDLLAHQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCVICNLVDDAQVCYQRLKELNNTQVDIDLFHA 596 (878)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 66753446555677723788876314447648999999999978995999938899999999999985289987799868
Q ss_pred CCCHHHHHHH----HHHHHC-C---CEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCC
Q ss_conf 9999999999----866544-8---81499853865001457887338970588747899986030103788
Q gi|254780601|r 277 ELSQQERSNA----LQMMRD-G---RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 (573)
Q Consensus 277 ~~~q~~R~~~----~~~fr~-g---~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~ 340 (573)
.....+|... ++.|-. | .-.|||||-|+.--|||+ .|..|-==+| ++..++|+||.-|--+
T Consensus 597 RF~~~DR~~~E~~vl~~~Gk~~~r~~g~IlVaTQVvEQSLDiD-fD~liTDLAP--iDlLlQR~GRLhRH~R 665 (878)
T PRK09694 597 RFTFNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDLD-FDWLITQHCP--ADLLFQRMGRLHRHHR 665 (878)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCC-CCHHHCCCCC--HHHHHHHHHHHHCCCC
T ss_conf 8877669999999999868898899986999773332430335-3301104686--9999987423205899
No 89
>KOG0920 consensus
Probab=99.75 E-value=6e-15 Score=119.71 Aligned_cols=311 Identities=18% Similarity=0.264 Sum_probs=189.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HHHHCCCE
Q ss_conf 99999999975996999928987468999999999861042122556882799984998999999999999-85446987
Q gi|254780601|r 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVV 104 (573)
Q Consensus 26 iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~-l~~~~~~~ 104 (573)
.+...|..+-+..-+++...||+|||.=----+++...... .....++--|-|==|+-|++.+.+ .+...|-.
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKtTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 89999999974966999578898712246699999998628------997388667751778999999988754666871
Q ss_pred EEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-CCCHHHH-HHHHHHHHCCCCCCE
Q ss_conf 99998899879999961289759982231013321000122464318999613110-0100123-578887521433422
Q gi|254780601|r 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-LDLGFRD-DIEFILDSSPKKRRM 182 (573)
Q Consensus 105 v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l~~gf~~-~i~~i~~~~p~~~q~ 182 (573)
|.--++..+ ......-++.||-|-|+..+.. .-.+.++.++|+||+-+= ++.-|.- -++.++..- .+-+.
T Consensus 251 VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~~thiivDEVHER~i~~DflLi~lk~lL~~~-p~Lkv 322 (924)
T KOG0920 251 VGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN-PDLKV 322 (924)
T ss_pred EEEEEEEEC------CCCCCEEEEEECHHHHHHHHCC-CCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHC-CCCEE
T ss_conf 368986201------3677516898406899987546-862145866544227971677521799999886228-88569
Q ss_pred EEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCC----------------CCCCHHC-----------CCC-CCCHHHHH
Q ss_conf 5631111222001111210123333233323256----------------6520000-----------000-00002455
Q gi|254780601|r 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH----------------SDIDYRA-----------VLV-ALSDRDNA 234 (573)
Q Consensus 183 ~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~----------------~~i~~~~-----------~~v-~~~~k~~~ 234 (573)
+|+|||+.. ..+. .|...+-.+.+....-.+ ..-.++. +.+ ...-.++.
T Consensus 323 ILMSAT~da--e~fs-~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920 323 ILMSATLDA--ELFS-DYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEEEEECCH--HHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHH
T ss_conf 986211262--8889-8718993586468786458878999998751444455655555667443222001154214779
Q ss_pred HHHCC----CCCCCCEEEEECCCHHHHHHHHHHHHHC-------CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 42001----0235641677513023345655555422-------666301048999999999986654488149985386
Q gi|254780601|r 235 IVNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEH-------LFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 (573)
Q Consensus 235 l~~ll----~~~~~~~~ivF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv 303 (573)
+..++ +...+...|||-........+.+.|... .+-+.+||+.|+-.+...+.+.--.|.-+|+++|++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~~~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99998740557887428997488899999999754156656666258870510088688998617899995123222013
Q ss_pred CCCCCCCCCCCEEE--------EECCCCCHHH----------HHHHHCCCCCCCCCCEEEEEECHHHHH
Q ss_conf 50014578873389--------7058874789----------998603010378886025640599999
Q gi|254780601|r 304 AARGIDLPDLELVI--------HAELSSNPEN----------LLHRSGRTGRAGRKGMSVFVIPQNMQR 354 (573)
Q Consensus 304 aaRGiDi~~v~~Vi--------n~d~P~~~~~----------yvHR~GRtgRag~~G~ai~l~~~~e~~ 354 (573)
|.=.|-|++|-+|| .||.-.+..+ =-+|.||+|| -+.|.|+.+++.....
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR-v~~G~cy~Ly~~~~~~ 547 (924)
T KOG0920 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR-VRPGICYHLYTRSRYE 547 (924)
T ss_pred HHHCCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEECCCCCHHHHCCCCCC-CCCCEEEEECCCHHHH
T ss_conf 7534523674799864715444405667854000242010036775455556-4576268840534333
No 90
>KOG0948 consensus
Probab=99.75 E-value=1.3e-17 Score=137.70 Aligned_cols=304 Identities=23% Similarity=0.282 Sum_probs=201.2
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89899999999975996999928987468999999999861042122556882799984998999999999999854469
Q gi|254780601|r 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG 102 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~ 102 (573)
+-|-|..+|..+-++..|+++|.|-.|||..---.|.+.+. ++ -+++.-+|-..|..|-|+++..=.+..|
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-~k--------QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-EK--------QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred CCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHH-HC--------CEEEEECHHHHHCCHHHHHHHHHHCCCC
T ss_conf 48067654531127963899840578852379999999987-64--------8589607315541154899998846365
Q ss_pred CEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCCC
Q ss_conf 8799998899879999961289759982231013321000122464318999613110010--01235788875214334
Q gi|254780601|r 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--GFRDDIEFILDSSPKKR 180 (573)
Q Consensus 103 ~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~--gf~~~i~~i~~~~p~~~ 180 (573)
+ ..|... +.-.+--+|-|-.-|..|+-||.--+..|-|+|.||.--|-|- |-. .-+. +-.+|++.
T Consensus 201 L----MTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVV-WEET-IIllP~~v 267 (1041)
T KOG0948 201 L----MTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVV-WEET-IILLPDNV 267 (1041)
T ss_pred E----EECCEE-------ECCCCCEEEEHHHHHHHHHHCCCHHHHEEEEEEEEEEHHCCCCCCCEE-EEEE-EEECCCCC
T ss_conf 2----305446-------689875453379999998743316755231488620010013445602-3566-78536660
Q ss_pred CEEEEECCCCCCCHHHHH---HHCCCCCCCCCCCCCCCCCCCCHH---------CCCCCCCHHH---------H------
Q ss_conf 225631111222001111---210123333233323256652000---------0000000024---------5------
Q gi|254780601|r 181 RMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYR---------AVLVALSDRD---------N------ 233 (573)
Q Consensus 181 q~~l~SAT~~~~i~~l~~---~~~~~p~~i~~~~~~~~~~~i~~~---------~~~v~~~~k~---------~------ 233 (573)
..++.|||+|+. ..+|+ ..-+.|..|.-+.-..|+ +.|+ |..|....++ .
T Consensus 268 r~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyRPTP--LQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948 268 RFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYRPTP--LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred EEEEEECCCCCH-HHHHHHHHHHHCCCCEEEEECCCCCC--CEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 389995658777-99999999975587428950587886--414453079980699970566422677999999763257
Q ss_pred ----------------------------HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC-------------
Q ss_conf ----------------------------542001023564167751302334565555542266630-------------
Q gi|254780601|r 234 ----------------------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV------------- 272 (573)
Q Consensus 234 ----------------------------~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~------------- 272 (573)
-+.+.+-..+..-+|||+=+|++|+.++-.+....|+..
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78644455544565776788987431999999999626896699981476799999765157678856888999999999
Q ss_pred --------------------------CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----ECCC
Q ss_conf --------------------------1048999999999986654488149985386500145788733897----0588
Q gi|254780601|r 273 --------------------------ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AELS 322 (573)
Q Consensus 273 --------------------------~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d~P 322 (573)
..||++-.--.+-+.=-|..|-+++|.||.-.|-||+.|.-+.|+- ||=-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred HHHCCHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 98548533155178888999873554344550478999999998502798877541231005886405887401114786
Q ss_pred C----CHHHHHHHHCCCCCCCC--CCEEEEEECHH
Q ss_conf 7----47899986030103788--86025640599
Q gi|254780601|r 323 S----NPENLLHRSGRTGRAGR--KGMSVFVIPQN 351 (573)
Q Consensus 323 ~----~~~~yvHR~GRtgRag~--~G~ai~l~~~~ 351 (573)
. +.-.|++=+||+||-|. .|.+|+.+...
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred CEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 40453366357741534556778775299995676
No 91
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.74 E-value=8e-15 Score=118.86 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=58.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--CCEEEE
Q ss_conf 564167751302334565555542266--6301048999999999986654488149985386500145788--733897
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD--LELVIH 318 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~~g~--~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~--v~~Vin 318 (573)
...+++|++++.+..+.+++.|....- ....|--+|+...|...+++|+.+.-.||+.|+-..-|+|+|+ +++||-
T Consensus 755 ~~G~~LVLFtS~~~L~~v~~~l~~~~~~~~~~ll~Qg~~~~sr~~ll~~F~~~~~svLlGt~SFwEGVDlpGd~L~~ViI 834 (932)
T PRK08074 755 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVTGGSRARLMKKFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 834 (932)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 29999999265999999999986433357955998789875099999999847984999656643562279988689999
Q ss_pred ECCCC
Q ss_conf 05887
Q gi|254780601|r 319 AELSS 323 (573)
Q Consensus 319 ~d~P~ 323 (573)
.-+|.
T Consensus 835 ~kLPF 839 (932)
T PRK08074 835 VRLPF 839 (932)
T ss_pred EECCC
T ss_conf 80899
No 92
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.9e-14 Score=116.29 Aligned_cols=323 Identities=20% Similarity=0.240 Sum_probs=200.5
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|. .|.++|-..--.+.+|+ |+.-+||-||||+-.+|+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 74 ~lg~-~~~dvQl~g~~~l~~g~--iaEm~TGEGKTL~a~l~~~l~al~g---------~~vhvvTvNdYLA~RDa~~m~~ 141 (799)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG---------KGVHLITTNDYLAKRDFEEMGQ 141 (799)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHHHHHHHH
T ss_conf 6599-76568999899984695--2455178858999999999997469---------9818980055777887999999
Q ss_pred HHHHCCCEEEEEECCCCHH---HHHHHHCCCCEEEEECCCCH-----HHHHH--CCCCCCCCCEEEEEECCCCCC-CC--
Q ss_conf 8544698799998899879---99996128975998223101-----33210--001224643189996131100-10--
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVH---RERRDLQNGAHIVVGTPGRL-----CDHIR--GKGLNISHLKAVVLDEADEML-DL-- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~---~q~~~l~~~~~iiv~TPgrl-----~d~~~--~~~l~l~~v~~lVlDEaD~ml-~~-- 163 (573)
++.++|+.|.+++++++-. .+.+.-.-.|||+.||..-+ .|.+. ....-.....|.|+||||-+| |-
T Consensus 142 iy~~lGl~vg~~~~~~~~~~~~~~~r~~~Y~~di~Y~tn~e~gfDyLrDn~~~~~~~~v~r~~~~aivDEvDsiLiDeAr 221 (799)
T PRK09200 142 VYEFLGLTVGLNFSDIDDYEYQAGEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVLRPLNYAIIDEVDSILLDEAQ 221 (799)
T ss_pred HHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEECCCCCCHHHHHCCCCCCCHHHCCCCCCCEEEEECHHHHHHHCCC
T ss_conf 99982965833368886443797999988747722235654003453012015676525778966898532667774135
Q ss_pred -------------HHHHHHHHHHHHCCC---------CCCEEEEECCC-----------------CCCCH----HHHHH-
Q ss_conf -------------012357888752143---------34225631111-----------------22200----11112-
Q gi|254780601|r 164 -------------GFRDDIEFILDSSPK---------KRRMLMFSATI-----------------SPAIT----TLAKN- 199 (573)
Q Consensus 164 -------------gf~~~i~~i~~~~p~---------~~q~~l~SAT~-----------------~~~i~----~l~~~- 199 (573)
.+......+...+-+ .++..|...-+ ...+. .|...
T Consensus 222 tPliisg~~~~~~~~~~~~~~~~~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~ 301 (799)
T PRK09200 222 TPLVISGAPRVQSNLYHIAAEFVKTLEEDVDYEFDKEKKEVWLTDQGIEKAESYFGIDNLYSEEHQVLVRHIILALRAHY 301 (799)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 64121489876527999999998526774437851100677624457999999709975476557789999999999999
Q ss_pred -HCCCCC------------------------------------CCCCCCCCCCCCCCCH-HCC-----------------
Q ss_conf -101233------------------------------------3323332325665200-000-----------------
Q gi|254780601|r 200 -YQKDAV------------------------------------RVNIASENRQHSDIDY-RAV----------------- 224 (573)
Q Consensus 200 -~~~~p~------------------------------------~i~~~~~~~~~~~i~~-~~~----------------- 224 (573)
|.++-- .|.+..++.+...|+. .|+
T Consensus 302 ~~~~d~~YiV~~~~v~ivDe~TGR~~~gr~~s~GlhQaiEaKE~v~i~~e~~t~a~it~Qn~Fr~y~kl~GmTGTa~~~~ 381 (799)
T PRK09200 302 LFERDVDYIVYDGEIVLIDRFTGRVLPGRKLQDGLHQAIEAKEGVEVTEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 381 (799)
T ss_pred HHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHCCHHCCCCCCCHHHH
T ss_conf 98458627986681899878988748998266577999998708987888731266448989864723125767609899
Q ss_pred -----------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf -----------------------------000000245542001-023-5641677513023345655555422666301
Q gi|254780601|r 225 -----------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 (573)
Q Consensus 225 -----------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~ 273 (573)
+....+|+.++..-+ +.+ ....++|-|.|....+.++..|...|+....
T Consensus 382 ~Ef~~iY~l~v~~iPtn~p~~r~d~~d~v~~t~~~k~~av~~~v~~~~~~g~pvLvgt~sv~~Se~~s~~L~~~~i~h~v 461 (799)
T PRK09200 382 KEFFEVYNMEVVQIPTNRPIIRIDYPDKVFATVDEKYKAVIEEVKERHETGRPVLIGTGSIEQSEYFSKLLFEAGIPHNL 461 (799)
T ss_pred HHHHHHHCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999868776988999985445474301089999999999999999857998899838579999999999865764332
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--------CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 04899999999998665448814998538650014578--------8733897058874789998603010378886025
Q gi|254780601|r 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--------DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 (573)
Q Consensus 274 lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~--------~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai 345 (573)
|+.. +.+++..+=.=--..-.|-|||+.|.||-||. +==|||--..+.+.--=-+=-||+||-|-+|.+.
T Consensus 462 LnAk--~~~~Ea~Iia~AG~~g~vTiaTnMAGRGtDI~l~~~v~~~GGL~Vigterhes~Rid~QlrGR~gRQGdpG~s~ 539 (799)
T PRK09200 462 LNAK--NAAQEAQIIAEAGQKGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 539 (799)
T ss_pred CCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 0532--17789999982789994898454558986953384535438817740344514667767516534579998548
Q ss_pred EEECHHHH
Q ss_conf 64059999
Q gi|254780601|r 346 FVIPQNMQ 353 (573)
Q Consensus 346 ~l~~~~e~ 353 (573)
.|++-+|.
T Consensus 540 f~~sled~ 547 (799)
T PRK09200 540 FFISLEDD 547 (799)
T ss_pred EEEECCHH
T ss_conf 99851478
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.74 E-value=1.4e-14 Score=117.28 Aligned_cols=315 Identities=19% Similarity=0.263 Sum_probs=187.7
Q ss_pred HHHHHCCCCC---CCHHHHHHHHHHH----CC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9999787987---8989999999997----59-96999928987468999999999861042122556882799984998
Q gi|254780601|r 13 EALSERGYVN---LTSVQEAILNPDL----RE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 13 ~~l~~~g~~~---pt~iQ~~~ip~~l----~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
+.|....+.. .-+-|..||..+- +| +-.++.--||||||-. ++.++.+|+... ...++|.||=..
T Consensus 404 ~~L~~~~~~~~i~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrt-aial~~rLlk~~------~~kRILFLvDR~ 476 (1126)
T PRK11448 404 QWLAEEPFDYELGLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRT-AIALMYRLLKAK------RFKRILFLVDRR 476 (1126)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH-HHHHHHHHHHCC------CCCEEEEECCHH
T ss_conf 6074289877777868899999999999980985468872488858989-999999999658------767257985658
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC----CCCCCCCCEEEEEECCCC-
Q ss_conf 999999999999854469879999889987999996128975998223101332100----012246431899961311-
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG----KGLNISHLKAVVLDEADE- 159 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~----~~l~l~~v~~lVlDEaD~- 159 (573)
+|+.|..+.|+......+.....+|.-..... ........|.|+|=..++..+.. ..+..+.-.++|+|||-+
T Consensus 477 ~L~~QA~~~F~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRg 554 (1126)
T PRK11448 477 ALGEQALDAFKDTKIEGNQTFASIYDIKGLTD--KFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRG 554 (1126)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC--CCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 99999999875434545666400220010256--7878777199973078998752357677999985137989778788
Q ss_pred -CC-------CCHHHHH------HHHHHHHCCCCCCEEEEECCCCC--------CC------HHHHHHHCCC---CCCCC
Q ss_conf -00-------1001235------78887521433422563111122--------20------0111121012---33332
Q gi|254780601|r 160 -ML-------DLGFRDD------IEFILDSSPKKRRMLMFSATISP--------AI------TTLAKNYQKD---AVRVN 208 (573)
Q Consensus 160 -ml-------~~gf~~~------i~~i~~~~p~~~q~~l~SAT~~~--------~i------~~l~~~~~~~---p~~i~ 208 (573)
.| +++|++. ...||+.. +.-.+-.+||=.. ++ ..++.-|+-+ |..|.
T Consensus 555 y~ld~em~e~e~~~rd~~s~~skyr~IldYF--DA~~iGLTATP~~~T~~~Fg~P~~~Ys~~eAV~DG~LVd~~~P~~i~ 632 (1126)
T PRK11448 555 YTLDKEMTEGELQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIE 632 (1126)
T ss_pred CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCHHHHHCCCCEEECHHHHHCCCCCCCCCCCEEEE
T ss_conf 7433231100010232024777899998762--15540476799955567709973000588873047556886887997
Q ss_pred CCCC--CCC------CC-------CCC------HHCCCCCCCHH-----------HHHHHHCCCCCCCCEEEEECCCHHH
Q ss_conf 3332--325------66-------520------00000000002-----------4554200102356416775130233
Q gi|254780601|r 209 IASE--NRQ------HS-------DID------YRAVLVALSDR-----------DNAIVNILRYHGAKNAIVFCSTRAS 256 (573)
Q Consensus 209 ~~~~--~~~------~~-------~i~------~~~~~v~~~~k-----------~~~l~~ll~~~~~~~~ivF~~t~~~ 256 (573)
+.-. ... .+ .+. ..-+.+..-+| ...|..-++...+.++||||.+...
T Consensus 633 T~l~~~Gi~~~~~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~H 712 (1126)
T PRK11448 633 TKLAKEGIHFEKGEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCVTDAH 712 (1126)
T ss_pred EEEECCCCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHH
T ss_conf 56510460358764344203000002025587313378888273203834799999999984588999876999278699
Q ss_pred HHHHHHHHHHC---------CCCCCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 45655555422---------6663010489999999999866544881-4998538650014578873389705887478
Q gi|254780601|r 257 VSRFTKVLAEH---------LFQVVALSGELSQQERSNALQMMRDGRA-RVCIATDVAARGIDLPDLELVIHAELSSNPE 326 (573)
Q Consensus 257 ~~~l~~~L~~~---------g~~~~~lhg~~~q~~R~~~~~~fr~g~~-~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~ 326 (573)
++.++..|.+. +--|..++|+.... ...+++|++... +|.|+-|+++-|||||.|..++-+-.=.+..
T Consensus 713 Ad~Iv~~l~e~F~~~y~~~~~~~~~~It~~~~~~--~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R~V~S~i 790 (1126)
T PRK11448 713 ADMVVRLLKEAFKKKYGQVEDDAIIKITGDADKV--QQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVKSRI 790 (1126)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH--HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCHH
T ss_conf 9999999999988647876784489970888447--89999725789983899856210476664201688766756677
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99986030103788
Q gi|254780601|r 327 NLLHRSGRTGRAGR 340 (573)
Q Consensus 327 ~yvHR~GRtgRag~ 340 (573)
-|-+=+||--|-.-
T Consensus 791 ~F~QMiGRGTRlc~ 804 (1126)
T PRK11448 791 LYEQMKGRATRLCP 804 (1126)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 86654167554376
No 94
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.73 E-value=9.2e-18 Score=138.62 Aligned_cols=82 Identities=43% Similarity=0.714 Sum_probs=79.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 56555554226663010489999999999866544881499853865001457887338970588747899986030103
Q gi|254780601|r 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 (573)
Q Consensus 258 ~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR 337 (573)
+.+++.|.+.|+++..+||+|++.+|..+++.|++++.+|||||+++++|+|+|++++||+||+|.++..|+||+||++|
T Consensus 1 ~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gidl~~~~~vI~~~~~~~~~~~~Q~~GR~~R 80 (82)
T smart00490 1 EELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred CHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 97899998889919999896999999999999987997199995024211489889999997899698999999725878
Q ss_pred CC
Q ss_conf 78
Q gi|254780601|r 338 AG 339 (573)
Q Consensus 338 ag 339 (573)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
T ss_conf 99
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=4.5e-14 Score=113.82 Aligned_cols=320 Identities=22% Similarity=0.243 Sum_probs=198.6
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|. .|.++|-..--.+.+|+ |+.-+||-||||+-.+|+.-.-+.. -.+-|++..-=||.-=++.+..
T Consensus 76 ~lg~-r~ydvQl~Gg~~L~~G~--iaEM~TGEGKTL~atlp~ylnaL~G---------kgvhvvTvNdYLA~RDae~m~~ 143 (823)
T PRK12906 76 VLGL-YPFDVQIIGGIALHFGN--IAEMRTGEGKTLTATLPVYLNALEG---------KGVHVVTVNEYLAKRDATEMGE 143 (823)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6389-76478999899983695--2565068858999999999986469---------9808980544655867999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHH------CCCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-33210------001224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIR------GKGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~------~~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++.++++......+ -.|||+.||..-+ .|+|. ....-.....|.|+||||-+| |-
T Consensus 144 vy~~lGltvg~i~~~~~~~err~a--Y~~DItY~Tn~e~gFDYLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPL 221 (823)
T PRK12906 144 LYRWLGLTVGLNLNDMSPDEKREA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (823)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHH--HCCCCEEECCCCEECCCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999809667120899998999998--507844625655021113544126888834788855898541465432356762
Q ss_pred ----------HHHHHHHHHHHHCC--------------------CCCCEEEEECCC--------------CCC--CHH--
Q ss_conf ----------01235788875214--------------------334225631111--------------222--001--
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP--------------------KKRRMLMFSATI--------------SPA--ITT-- 195 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p--------------------~~~q~~l~SAT~--------------~~~--i~~-- 195 (573)
.+...+..++..+. +.++..|.-.-+ +.. +..
T Consensus 222 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i 301 (823)
T PRK12906 222 IISGPAEGASDLYIRADRFVKTLTKDEDDDADDDEDHGDYKIDEPSKTVSLTEEGIEKAEKLLGLDNLYDPENQALVHHI 301 (823)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 66257755535899999999999863431123347777758742546677517799998860488877883110599999
Q ss_pred ---H-HHH-HCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC---------
Q ss_conf ---1-112-1012333------------------------------------323332325665200-000---------
Q gi|254780601|r 196 ---L-AKN-YQKDAVR------------------------------------VNIASENRQHSDIDY-RAV--------- 224 (573)
Q Consensus 196 ---l-~~~-~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~--------- 224 (573)
| |.. |.++--. |.+..++.+...|+. .|+
T Consensus 302 ~~aL~A~~lf~~d~dYiV~d~~V~ivDe~TGR~m~gRr~s~GLHQAiEaKE~v~i~~e~~tlA~IT~QnfFr~Y~kLsGM 381 (823)
T PRK12906 302 DQALRANYLMLKDKDYIVQNGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQNENQTLATITYQNYFRLYKKLSGM 381 (823)
T ss_pred HHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCHHHCCC
T ss_conf 99999999985798589988918998788888689992664679999987288778887303676699998646253167
Q ss_pred -------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHH
Q ss_conf -------------------------------------000000245542001-023-56416775130233456555554
Q gi|254780601|r 225 -------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLA 265 (573)
Q Consensus 225 -------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~ 265 (573)
+....+|+.++..-+ +.+ ...-++|-+.|....+.++..|.
T Consensus 382 TGTA~te~~Ef~~iY~l~Vv~IPTn~P~~R~d~~d~iy~t~~~K~~Ai~~ei~~~~~~gqPvLvGT~SVe~SE~ls~~L~ 461 (823)
T PRK12906 382 TGTAKTEEEEFREIYNMDVITIPTNRPVIRVDLPDLLYPTLDSKFNAVVDDIKERHAKGQPVLVGTVSIESSERLSQLLD 461 (823)
T ss_pred CCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 67768789999998688618717999851150743464799999999999999998679988997175899999999999
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--------------------------------C
Q ss_conf 22666301048999999999986654488149985386500145788--------------------------------7
Q gi|254780601|r 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD--------------------------------L 313 (573)
Q Consensus 266 ~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~--------------------------------v 313 (573)
..|++...|+.. +.+++..+=.=--..-.|-|||+.|.||-||.= |
T Consensus 462 ~~gi~h~vLNAk--~~~~EA~IIa~AG~~GaVTIATNMAGRGTDI~LGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 539 (823)
T PRK12906 462 KAGIPHAVLNAK--NHAKEAEIIAQAGQRGAVTIATNMAGRGTDIKLGGNPFEDIEAYQEAWIRELPKMKQRCEERRDKV 539 (823)
T ss_pred HCCCCHHHHCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 768703530687--757899999834899938970655689879630897302134332224667888888776556899
Q ss_pred -----CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf -----338970588747899986030103788860256405999
Q gi|254780601|r 314 -----ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 -----~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
=|||--.-..+---=-+=-||+||-|-.|.+.+|++=+|
T Consensus 540 ~~~GGL~VIgTErheSrRIDnQLrGRaGRQGDPGss~F~lSLED 583 (823)
T PRK12906 540 RELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSTRFYLSLED 583 (823)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 97389379850444025678787232134799985237653346
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=4.7e-14 Score=113.67 Aligned_cols=320 Identities=23% Similarity=0.251 Sum_probs=196.1
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|. .|.++|-..--.+.+|+ |+.-+||-||||+-.||+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 77 ~lg~-~~~dvQl~gg~~l~~g~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDa~~m~~ 144 (833)
T PRK12904 77 VLGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG---------KGVHVVTVNDYLAKRDAEWMGP 144 (833)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCC---------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6589-76478999899994695--2465068858999999999997369---------9819981555777877999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++......+ -.|||+.||..-+ .|+|.- ..+-.....|.|+||||-.| |-
T Consensus 145 ~~~~lGltvg~i~~~~~~~~r~~a--Y~~ditY~tn~e~gFDyLrDnm~~~~~~~v~r~~~~aivDE~DSiLiDeArtPL 222 (833)
T PRK12904 145 LYNFLGLSVGVILSGMSPEERREA--YAADITYGTNNEFGFDYLRDNMVFSLEDRVQRGLNYAIVDEVDSILIDEARTPL 222 (833)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHEEECCCCCE
T ss_conf 999819788043899983999998--637713412543245412555437889875012572688641132013267773
Q ss_pred ----------HHHHHHHHHHHHCC---------CCCCEEEEECCC--------------CCC------CHH-H-HHH-HC
Q ss_conf ----------01235788875214---------334225631111--------------222------001-1-112-10
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP---------KKRRMLMFSATI--------------SPA------ITT-L-AKN-YQ 201 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p---------~~~q~~l~SAT~--------------~~~------i~~-l-~~~-~~ 201 (573)
.+...+..+...+- +.++..|..+-+ +.. |.. | |.. |.
T Consensus 223 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~al~A~~l~~ 302 (833)
T PRK12904 223 IISGPAEDSSELYKRANKFVPTLKKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHVNQALRAHYLFK 302 (833)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88678877779999999999974787867995155775314526999998506566578432369998899999999985
Q ss_pred CCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--------------------
Q ss_conf 12333------------------------------------323332325665200-000--------------------
Q gi|254780601|r 202 KDAVR------------------------------------VNIASENRQHSDIDY-RAV-------------------- 224 (573)
Q Consensus 202 ~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-------------------- 224 (573)
++--. |.+..++.+...|+. .|+
T Consensus 303 ~d~dYiV~d~~v~ivDe~TGR~m~grr~~~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~klsGMTGTa~te~~Ef 382 (833)
T PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382 (833)
T ss_pred CCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHH
T ss_conf 68707988790799866777626787065477999999848877888700123029889832755135677867789999
Q ss_pred --------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------------------------000000245542001-023-5641677513023345655555422666301048
Q gi|254780601|r 225 --------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 (573)
Q Consensus 225 --------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg 276 (573)
+....+|+.++..-+ +.+ ...-++|-+.|....+.++..|...|++...|+.
T Consensus 383 ~~iY~l~V~~IPtn~p~~R~d~~d~iy~t~~~K~~ai~~ei~~~~~~gqPvLvGT~sve~SE~ls~~L~~~~i~h~vLNA 462 (833)
T PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTTSIEKSELLSKLLKKAGIPHNVLNA 462 (833)
T ss_pred HHHHCCCEEECCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99868876985899985436088702079999999999999999976997899427479899999999873782776177
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--------------------------------CC-----CEEEEE
Q ss_conf 99999999998665448814998538650014578--------------------------------87-----338970
Q gi|254780601|r 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--------------------------------DL-----ELVIHA 319 (573)
Q Consensus 277 ~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~--------------------------------~v-----~~Vin~ 319 (573)
. +.+++..+=.=--..-.|-|||+.|.||-||. .| =|||--
T Consensus 463 k--~~~~EA~Iia~AG~~gaVTiATNMAGRGTDI~LGGn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigt 540 (833)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAGLEDETEEQIAKIKAEWQKEHEEVLEAGGLHVIGT 540 (833)
T ss_pred C--HHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3--66668899995599997687402567886821688633444432001466788888887653377886389279851
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf 588747899986030103788860256405999
Q gi|254780601|r 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 320 d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
.--.+---=-+=-||+||-|-.|.+..|++=+|
T Consensus 541 erhesrRiD~QLrGR~GRQGDpG~s~f~lSleD 573 (833)
T PRK12904 541 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 573 (833)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 433346678786122145689985326541208
No 97
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=4.5e-14 Score=113.79 Aligned_cols=289 Identities=17% Similarity=0.219 Sum_probs=159.6
Q ss_pred HHHCCCCCCCHHHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 9978798789899999999----975996999928987468999999999861042122556882799984998999999
Q gi|254780601|r 15 LSERGYVNLTSVQEAILNP----DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV 90 (573)
Q Consensus 15 l~~~g~~~pt~iQ~~~ip~----~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv 90 (573)
..-.||+ +-|=|.+-... +-+|+.+++.|+||||||+||++|++.. .. .-.++|-+.|..|-.|+
T Consensus 239 ~~~~g~E-~R~~Q~~Ma~~V~~al~~~~~l~IEAgTGtGKTlaYLlPaia~---~~-------~~~vVIST~T~~LQeQL 307 (820)
T PRK07246 239 IALLGLE-ERPKQEQFAQLVDEDYHDGVASFIEAQTGIGKTYGYLLPLLAQ---SD-------QNQIIVSVPTKLLQDQI 307 (820)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH---CC-------CCEEEEEECCHHHHHHH
T ss_conf 2567986-1889999999999998058838998899964799999999984---37-------98399990869999999
Q ss_pred H-HHHHHHHHHCCCEEEEEECCCCH---------------HH-------HH-------------------------HHH-
Q ss_conf 9-99999854469879999889987---------------99-------99-------------------------961-
Q gi|254780601|r 91 G-RELEWLYAKTGVVVAVCIGGVSV---------------HR-------ER-------------------------RDL- 121 (573)
Q Consensus 91 ~-~~~~~l~~~~~~~v~~~~gg~~~---------------~~-------q~-------------------------~~l- 121 (573)
. +.+-.+.+..++.+..+=|-.++ .. ++ ..+
T Consensus 308 ~~kDlp~L~~~l~~~~~~lKGr~nYLcL~~~~~~l~~~d~~~~~~~~~~~ll~Wl~~T~tGD~dEL~~~~~~~~~~~~i~ 387 (820)
T PRK07246 308 MAGEVKAIQEQFHIACHSLKGPQNYLKLDSFYDSLQQNDQNRLVNRYKMQLLVWLLETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHHHCCCCCEEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCC
T ss_conf 99789999998487503365678616488899986045302354589999999972689889777235410357877506
Q ss_pred -----------------------CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC---------------
Q ss_conf -----------------------289759982231013321000122464318999613110010---------------
Q gi|254780601|r 122 -----------------------QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--------------- 163 (573)
Q Consensus 122 -----------------------~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~--------------- 163 (573)
...+||||+.=.=|+.++.... .+..-.++|+|||-.+.+.
T Consensus 388 ~~~~l~~~~~~~~~cf~~~ar~~a~~AdivI~NHalLl~~~~~~~-~~~~~~~lIiDEAH~L~~~~~~~~~~~~~~~~~l 466 (820)
T PRK07246 388 HDGDLKQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFVRNKVLVFDEAQKLMLQLEQLSRHQLNITVFL 466 (820)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHH
T ss_conf 557788789876405999999998616589846799999874144-5776887999881427999999999882699999
Q ss_pred ----------------------HH------------------HHHHHH------------------HH------------
Q ss_conf ----------------------01------------------235788------------------87------------
Q gi|254780601|r 164 ----------------------GF------------------RDDIEF------------------IL------------ 173 (573)
Q Consensus 164 ----------------------gf------------------~~~i~~------------------i~------------ 173 (573)
.| .+.+.. ++
T Consensus 467 ~~l~~~l~~~~~~l~~~lle~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~el~~~~~~~l~~~~~~~~~~~wl~~~ 546 (820)
T PRK07246 467 QTIQKKLSNPLPLLEKRLLESISFELGQLSEDFYQNKSHQLAHDWLSRLAQYASELEGADYQELQAFFATSDGDYWLESE 546 (820)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999985416589999999999999999999986065555789999999999998899999999986073676799843
Q ss_pred ---------------------HHCCCCCCEEEEECCCC--CCCHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHCCCCC--
Q ss_conf ---------------------52143342256311112--2200111121-012333323332325665200000000--
Q gi|254780601|r 174 ---------------------DSSPKKRRMLMFSATIS--PAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVA-- 227 (573)
Q Consensus 174 ---------------------~~~p~~~q~~l~SAT~~--~~i~~l~~~~-~~~p~~i~~~~~~~~~~~i~~~~~~v~-- 227 (573)
+.+|..+.++++||||. +.. .+.+.. +.+.....+... .-.|..+.+.
T Consensus 547 ~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~i~tSATLtv~~~f-~~~~~lGl~~~~~~~lp~~-----~~~~~~l~v~~d 620 (820)
T PRK07246 547 KQEEKRVTYLNSASKAFIHFSQLLPETVKTYFVSATLTISPEV-SLADLLGFEEYLYHKIEKD-----KKQDQLVLVDQE 620 (820)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECEECCCCCC-CHHHHHCCCCCCCCCCCCC-----CHHCCEEEECCC
T ss_conf 5666523786246235899998750069099990450609966-3888719960120438998-----343378997589
Q ss_pred -----C---CHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf -----0---002455420010--235641677513023345655555422666301048999999999986654488149
Q gi|254780601|r 228 -----L---SDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 (573)
Q Consensus 228 -----~---~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~v 297 (573)
. ..-.+.+...+. .....+++|.+++++.-+.+++.|...++...+ .| ....+....++|+.+.-.|
T Consensus 621 ~P~~~~~~~~~y~~~la~~i~~l~~~~g~~LVLFTS~~~l~~v~~~L~~~~~~~L~-Qg--~~gs~~~l~~rF~~~~~si 697 (820)
T PRK07246 621 MPIVTEVSDEIYAEAIAKRLESLKQEGQPILVLFNSKKHLLAVSDYLDQWQVSHLA-QE--KNGTAYNIKKRFDRGEQTI 697 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCEEE-EC--CCCCHHHHHHHHHHCCCEE
T ss_conf 99889998599999999999999974999999953099999999998537997788-67--9767999999998489969
Q ss_pred EEECCCCCCCCCCCC--CCEEEEECCCCC
Q ss_conf 985386500145788--733897058874
Q gi|254780601|r 298 CIATDVAARGIDLPD--LELVIHAELSSN 324 (573)
Q Consensus 298 LV~TDvaaRGiDi~~--v~~Vin~d~P~~ 324 (573)
|+.|+-..-|+|+|+ +.+||-.-+|..
T Consensus 698 LlGt~SFWEGVDlpG~~L~~vVI~kLPF~ 726 (820)
T PRK07246 698 LLGLGSFWEGVDFIQADRMIEVITRLPFD 726 (820)
T ss_pred EEECCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99766764664489987799998869999
No 98
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.5e-13 Score=110.40 Aligned_cols=320 Identities=23% Similarity=0.266 Sum_probs=197.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87987898999999999759969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 18 ~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+|. .|.++|-..=-.+.+|+ |+.-+||-||||.-.||+.-.-+... -+-|++..-=||.-=++.+..+
T Consensus 115 lg~-r~ydvQliGg~~Lh~G~--IaEM~TGEGKTL~atlpaylnAL~G~---------gVHvvTvNDYLA~RDae~mg~i 182 (673)
T PRK12898 115 LGM-RHFPVQLMGGLALLEGW--LAEMQTGEGKTLTATLPAGTAALAGR---------PVHVITVNDYLAERDAEQMRPL 182 (673)
T ss_pred CCC-CCCHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCCC---------CEEEEECCHHHHHHHHHHHHHH
T ss_conf 389-86468999899984584--35750788589999999999973699---------7089804557778769999999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-----HHHHHC---------------------CCCCCCCCEE
Q ss_conf 54469879999889987999996128975998223101-----332100---------------------0122464318
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-----CDHIRG---------------------KGLNISHLKA 151 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-----~d~~~~---------------------~~l~l~~v~~ 151 (573)
+.++|+.|.++..+++......+ -.|||+.||-.-+ .|.+.- ..+-...+.|
T Consensus 183 y~fLGLsvg~i~~~~~~~eRr~a--Y~~DItYgTn~E~GFDYLRDnm~~~~~~~~~~~~~~~l~~~~~~~~~~vqR~l~f 260 (673)
T PRK12898 183 YEALGVTVGCVIEDQDPEERRAA--YGADVTYCTNKELVFDYLRDRIALGQRAGDARLALESLRGGSERSGQLLLRGLHF 260 (673)
T ss_pred HHHHCCEEEEECCCCCHHHHHHH--HCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCE
T ss_conf 99829778451799997999997--2699579565233245776413023343211111011013346677751356753
Q ss_pred EEEECCCCCC-CC--------------H---HHHHHHHHHHHCCC---------CCCEEEEECCC--------------C
Q ss_conf 9996131100-10--------------0---12357888752143---------34225631111--------------2
Q gi|254780601|r 152 VVLDEADEML-DL--------------G---FRDDIEFILDSSPK---------KRRMLMFSATI--------------S 190 (573)
Q Consensus 152 lVlDEaD~ml-~~--------------g---f~~~i~~i~~~~p~---------~~q~~l~SAT~--------------~ 190 (573)
.|+||||-+| |- . +......+...+.+ .++..|.-+-. .
T Consensus 261 AIVDEvDSILIDEARTPLIISgp~~~~~~~~~y~~a~~~~~~L~~~~dY~iDek~k~v~LTe~G~~~ie~~l~~~~~~~~ 340 (673)
T PRK12898 261 AIVDEADSVLIDEARTPLIISAPAKEEDGAAVLRRALALAAELQEGEDYRIDAATKQIELTEAGRARIAALAESLPPAWR 340 (673)
T ss_pred EEEECHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECHHHHHHHHHHHCCCCCCCC
T ss_conf 78733033121024676101477777640899999999998567888779866888265786799999997241565565
Q ss_pred CC------CHH-HH-H-HHCCCCCC------------------------------------CCCCCCCCCCCCCCH-HC-
Q ss_conf 22------001-11-1-21012333------------------------------------323332325665200-00-
Q gi|254780601|r 191 PA------ITT-LA-K-NYQKDAVR------------------------------------VNIASENRQHSDIDY-RA- 223 (573)
Q Consensus 191 ~~------i~~-l~-~-~~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~- 223 (573)
.. |.. |- . .|.+|--. |.+..++.+...|+. -|
T Consensus 341 ~~~~~~~~i~~ALrA~~lf~rDvdYIV~dgeVvIVDEfTGR~m~GRrwsdGLHQAIEAKEgV~I~~e~qTlAsIT~QnfF 420 (673)
T PRK12898 341 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWSDGLHQAIEAKEGVELTDPRETLARITFQRFF 420 (673)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 31148999999999999985798389978928998788885068880663789999985399878312356643499999
Q ss_pred ---------------------------------------------CCCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHH
Q ss_conf ---------------------------------------------0000000245542001-023-56416775130233
Q gi|254780601|r 224 ---------------------------------------------VLVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRAS 256 (573)
Q Consensus 224 ---------------------------------------------~~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~ 256 (573)
++....+|+.++..-+ +.+ ...-++|-+.|...
T Consensus 421 R~Y~kLsGMTGTA~tea~Ef~~iY~L~Vv~IPTnrP~~R~D~~D~vy~t~~~K~~Aii~ei~~~~~~GqPVLVGT~SVe~ 500 (673)
T PRK12898 421 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRIVLPTEVFLTLAAKWAAVAARVRELHASGRPVLVGTRSVAA 500 (673)
T ss_pred HHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 85617405777857579999997599769868999730123798585699999999999999998679988998375899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC-----CEEEEECCCCCHHHH
Q ss_conf 4565555542266630104899999999998665448814998538650014578---87-----338970588747899
Q gi|254780601|r 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL-----ELVIHAELSSNPENL 328 (573)
Q Consensus 257 ~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v-----~~Vin~d~P~~~~~y 328 (573)
.+.|+..|.+.|++...|+.. +.+++..+=.=--..-.|-|||+.|.||-||. +| =|||--+--.+---=
T Consensus 501 SE~lS~~L~~~gi~h~VLNAk--~~~~EA~IIA~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRID 578 (673)
T PRK12898 501 SERLSALLREAGLPHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPEVAARGGLHVILTERHESARID 578 (673)
T ss_pred HHHHHHHHHHCCCCHHHCCCC--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCEEEECCCCCHHHHH
T ss_conf 999999999869975664786--668799999943999987970236789868476767886289889843755112456
Q ss_pred HHHHCCCCCCCCCCEEEEEECHHHH
Q ss_conf 9860301037888602564059999
Q gi|254780601|r 329 LHRSGRTGRAGRKGMSVFVIPQNMQ 353 (573)
Q Consensus 329 vHR~GRtgRag~~G~ai~l~~~~e~ 353 (573)
-+=-||+||-|-.|.+..|++-+|.
T Consensus 579 nQLrGRsGRQGDPGss~f~lSleDd 603 (673)
T PRK12898 579 RQLAGRCGRQGDPGSSEAILSLEDD 603 (673)
T ss_pred HHHHCCCCCCCCCCCEEEEEEECHH
T ss_conf 5642354468999851489981467
No 99
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=99.70 E-value=4.6e-17 Score=133.96 Aligned_cols=77 Identities=48% Similarity=0.791 Sum_probs=74.7
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC
Q ss_conf 55422666301048999999999986654488149985386500145788733897058874789998603010378
Q gi|254780601|r 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 (573)
Q Consensus 263 ~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag 339 (573)
.|...|+++..+||+|+..+|..+++.|++++.+|||||+++++|+|+|++++||+||+|.++..|+||+||++|.|
T Consensus 2 ~l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gid~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 78 (78)
T pfam00271 2 LLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNVVINYDLPWNPASYIQRIGRAGRAG 78 (78)
T ss_pred CHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 45568985999869799999999999998799739999256525677878999999789969899999972687799
No 100
>pfam06862 DUF1253 Protein of unknown function (DUF1253). This family represents the C-terminal portion (approximately 500 residues) of several hypothetical eukaryotic proteins of unknown function.
Probab=99.69 E-value=2.1e-15 Score=122.74 Aligned_cols=290 Identities=19% Similarity=0.202 Sum_probs=193.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHHH-CCC----EEEEEECCCCH----------HHHHHH--------------
Q ss_conf 5568827999849989999999999998544-698----79999889987----------999996--------------
Q gi|254780601|r 70 SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGV----VVAVCIGGVSV----------HRERRD-------------- 120 (573)
Q Consensus 70 ~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~-~~~----~v~~~~gg~~~----------~~q~~~-------------- 120 (573)
+.-..|.+|||+|||.-|..+-+.+..|... ..+ +-..=||+.+- ....+.
T Consensus 31 QGftRPKVLIL~P~R~~A~~~V~~l~~l~~~~~~v~nk~RF~~ef~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 110 (435)
T pfam06862 31 QGFTRPKVLILLPTRNIALEVVDTLIKLLPASDQVENKKRFNDEFGEDDDEEPPTLKTKKPEDFQALFKGNNDDMFRLGI 110 (435)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEE
T ss_conf 89888869998587899999999999875836667889999876188511157544679958899972899767388877
Q ss_pred ------HC-----CCCEEEEECCCCHHHHHHC------CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC---CCC-
Q ss_conf ------12-----8975998223101332100------01224643189996131100100123578887521---433-
Q gi|254780601|r 121 ------LQ-----NGAHIVVGTPGRLCDHIRG------KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK- 179 (573)
Q Consensus 121 ------l~-----~~~~iiv~TPgrl~d~~~~------~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~---p~~- 179 (573)
++ ...|||||.|--|.-.+.. ..=.|+.+..+|+|.||.|+-++ .+.+..|++++ |++
T Consensus 111 k~trksikLys~Fy~SDIIiASPLGLr~~i~~~~~k~rd~DFLSSIEvlIiDqad~l~MQN-W~Hv~~v~~~lN~~Pk~~ 189 (435)
T pfam06862 111 KFTRKSIKLYSPFYSSDIIIASPLGLRMIIENEDEKKRDYDFLSSIEVLIVDQADVILMQN-WEHVLTVFKHLNKIPKKS 189 (435)
T ss_pred EECCCEEEEECCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHH-HHHHHHHHHHHCCCCCCC
T ss_conf 8706705984565658979988188899863677644456400004678743266898741-999999999844487756
Q ss_pred --------------------CCEEEEECCCCCCCHHHHHHHCCCCC-CCCCCCC------CCCCCCCCHHCCCCCCC---
Q ss_conf --------------------42256311112220011112101233-3323332------32566520000000000---
Q gi|254780601|r 180 --------------------RRMLMFSATISPAITTLAKNYQKDAV-RVNIASE------NRQHSDIDYRAVLVALS--- 229 (573)
Q Consensus 180 --------------------~q~~l~SAT~~~~i~~l~~~~~~~p~-~i~~~~~------~~~~~~i~~~~~~v~~~--- 229 (573)
|||++||+-..+++..|.+.++.|.. .|.+... ......++|.|..+...
T Consensus 190 h~~DfsRVR~w~L~g~ak~~RQTii~s~~~~p~~nsl~~~~~~N~~Gkvr~~~~~~~g~i~~v~~~v~Q~F~R~~~~s~~ 269 (435)
T pfam06862 190 HGADFSRVRMWYLDGQAKYYRQTIIFSSYITPEINSLFNSKCVNYRGKVKLKPIYKSGVIGQVGLKVRQIFQRFDASSIV 269 (435)
T ss_pred CCCCEEHEEHHHHCCCHHHHEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCCEEEEEECCCCCC
T ss_conf 79982000075726723553466886336888899999974735565588734777755102567864269985689845
Q ss_pred ----HHHHH-----HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf ----02455-----420010235641677513023345655555422666301048999999999986654488149985
Q gi|254780601|r 230 ----DRDNA-----IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 (573)
Q Consensus 230 ----~k~~~-----l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~ 300 (573)
.+++. |-.+.+......++||+.+--+--.|-.+|....++...++---++.+-.++-..|.+|+.+||+-
T Consensus 270 ~~~d~Rf~~F~~~vlp~l~~~~~~~~~LI~iPSYfDfVRvRn~l~~~~~sF~~i~EYt~~~~israR~~F~~g~~~iLLy 349 (435)
T pfam06862 270 DDPDARFKFFTSNVLPQLRKSSYDSGTLIFIPSYFDFVRIRNYLKKENVSFAAISEYTSQKKISRARTLFFSGRIKVLLY 349 (435)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 47468999999976057663578897899956458999999999870883776756388778999999987599418999
Q ss_pred CCCCC--CCCCCCCCCEEEEECCCCCHHHHHHHHCCCC------CCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 38650--0145788733897058874789998603010------378886025640599999999999
Q gi|254780601|r 301 TDVAA--RGIDLPDLELVIHAELSSNPENLLHRSGRTG------RAGRKGMSVFVIPQNMQRRAERLF 360 (573)
Q Consensus 301 TDvaa--RGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg------Rag~~G~ai~l~~~~e~~~~~~i~ 360 (573)
|.=+- |=--|.+|.+||-|.+|..+.-|-.=++--+ ..+..+.+.++++.-|.-.++.|-
T Consensus 350 TER~hffrRy~ikGi~~vIFY~~P~~p~FY~El~~~l~~s~~~~~~~~~~~v~~lyskyD~l~LErIV 417 (435)
T pfam06862 350 TERLHFFRRYKIKGVKNVIFYGPPENPQFYSELVRMLGKSVNNGEALAAASVRALYSKYDALALERIV 417 (435)
T ss_pred EHHHHHEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 60244411200278747999789998338999986551254454456776799998715487898875
No 101
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.69 E-value=2.7e-13 Score=108.57 Aligned_cols=279 Identities=20% Similarity=0.215 Sum_probs=168.6
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|. .|.++|-..=-.+.+|+ |+.-+||-||||+-.||+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 72 ~lg~-r~~dvQl~gg~~Lh~G~--iaEM~TGEGKTL~atlp~ylnal~G---------kgvhvvTvNdYLA~RDae~m~~ 139 (891)
T CHL00122 72 VLGL-RHFDVQLIGGLVLNDGK--IAEMKTGEGKTLVATLPAYLNALTG---------KGVHIVTVNDYLARRDSEWMGQ 139 (891)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6489-76469999899984595--2465068857999999999997559---------9729980645656866999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++......+ -.|||+.||..-+ .|+|.- ...-.....|.|+||||-+| |-
T Consensus 140 vy~~lGlsvg~i~~~~~~~er~~a--Y~~DItY~Tn~e~gFDyLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPL 217 (891)
T CHL00122 140 IYRFLGLSVGLIQEDMSIEERKQN--YKADITYVTNSELGFDYLRDNMALSLSEVVQRPFNYCIIDEVDSILIDEARTPL 217 (891)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HCCCCEEECCCCEECCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999829667020899997999998--358927978876222566633236878840889973788640455432256885
Q ss_pred ---HH-------HHHHHHHHHHCCC---------CCCEEE-----------------EECCCCCCCHHH-----HHH-HC
Q ss_conf ---01-------2357888752143---------342256-----------------311112220011-----112-10
Q gi|254780601|r 164 ---GF-------RDDIEFILDSSPK---------KRRMLM-----------------FSATISPAITTL-----AKN-YQ 201 (573)
Q Consensus 164 ---gf-------~~~i~~i~~~~p~---------~~q~~l-----------------~SAT~~~~i~~l-----~~~-~~ 201 (573)
|- ......+...+-+ .++..| +++- ...+.-+ |+. |.
T Consensus 218 iIsg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~v~lte~G~~~~e~~l~~~~ly~~~-~~~~~~i~~al~A~~lf~ 296 (891)
T CHL00122 218 IISGPVETPIDKYIVAAEIANYLEKDVHYEVDEKNRNIILTDQGILQCEKILKIKDLYDPE-DPWIPYILNAIKAKELFI 296 (891)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 8627987744789999999864377666786223157850632699998613753447854-339999999999998760
Q ss_pred CCCCC------------------------------------CCCCCCCCCCCCCCHH-CC--------------------
Q ss_conf 12333------------------------------------3233323256652000-00--------------------
Q gi|254780601|r 202 KDAVR------------------------------------VNIASENRQHSDIDYR-AV-------------------- 224 (573)
Q Consensus 202 ~~p~~------------------------------------i~~~~~~~~~~~i~~~-~~-------------------- 224 (573)
++--. |.+..++.+...|+.. |+
T Consensus 297 ~d~dYiV~d~~v~ivDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~A~IT~Qn~Fr~y~klsGMTGTA~te~~Ef 376 (891)
T CHL00122 297 KNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENVPIQQETQTLASITYQNFFLLYPKLSGMTGTAKTEEVEL 376 (891)
T ss_pred CCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHH
T ss_conf 69748998898999867888878999356477999998718877888721366659999854504226756768789999
Q ss_pred --------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------------------------000000245542001-023-5641677513023345655555422666301048
Q gi|254780601|r 225 --------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 (573)
Q Consensus 225 --------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg 276 (573)
+.....|+.++..-+ +.+ ...-++|-+.|....+.++..|...|++...|+.
T Consensus 377 ~~iY~l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SVe~SE~ls~~L~~~gi~h~vLNA 456 (891)
T CHL00122 377 EKIYNLEVICIPTHRPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSVEKSELLSQLLEEYQLPHNLLNA 456 (891)
T ss_pred HHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 99858847988999985003088957788999999999999999967999898346558899999999974786220238
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9999999999866544881499853865001457
Q gi|254780601|r 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 (573)
Q Consensus 277 ~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi 310 (573)
.-...+|+..+=.=--..-.|-|||+.|.||-||
T Consensus 457 k~~n~~~EA~IiA~AG~~gaVTIATNMAGRGTDI 490 (891)
T CHL00122 457 KPENVKRESEIIAQAGRKGAITIATNMAGRGTDI 490 (891)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCE
T ss_conf 8430789999999569999389715556898784
No 102
>KOG0922 consensus
Probab=99.69 E-value=3e-14 Score=115.02 Aligned_cols=320 Identities=22% Similarity=0.350 Sum_probs=198.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHHHHCCCEEEEEECCCCH
Q ss_conf 59969999289874689999999998610421225568827999849989999999999-99854469879999889987
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~-~~l~~~~~~~v~~~~gg~~~ 114 (573)
..+-+|+...||||||. -|| |-|.... + ...-..-+--|-|--|+-+++-+ .-.+..+|-.|.-.+ .+
T Consensus 65 ~nqvlIviGeTGsGKST--Qip--QyL~eaG--~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I---RF 133 (674)
T KOG0922 65 DNQVLIVIGETGSGKST--QIP--QYLAEAG--F--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI---RF 133 (674)
T ss_pred HCCEEEEECCCCCCCCC--CHH--HHHHHCC--C--CCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEE---EE
T ss_conf 78779998489898533--276--9998626--5--668827750671677888999999985897676222699---84
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-C--C--CHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 9999961289759982231013321000122464318999613110-0--1--001235788875214334225631111
Q gi|254780601|r 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-L--D--LGFRDDIEFILDSSPKKRRMLMFSATI 189 (573)
Q Consensus 115 ~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l--~--~gf~~~i~~i~~~~p~~~q~~l~SAT~ 189 (573)
++ .-.+..-|..=|-|-|+.++.... .|++-.+++||||-+= | | +|+ ++.|++.-|. -..++.|||+
T Consensus 134 ed---~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGl---LKki~~~R~~-LklIimSATl 205 (674)
T KOG0922 134 ED---STSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGL---LKKILKKRPD-LKLIIMSATL 205 (674)
T ss_pred CC---CCCCCEEEEEECCHHHHHHHHCCC-CCCCCCEEEEECHHHHHHHHHHHHHH---HHHHHHCCCC-CEEEEEEEEE
T ss_conf 56---678733699961359999885087-64544489983223101578899999---9998732778-3699992352
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHH-HHHHHHCC---CCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 222001111210123333233323256652000000000002-45542001---02356416775130233456555554
Q gi|254780601|r 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLA 265 (573)
Q Consensus 190 ~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k-~~~l~~ll---~~~~~~~~ivF~~t~~~~~~l~~~L~ 265 (573)
..+ ++ ..|+.++..+.+....-. |+.+|..-+..|- .+++..++ ..+++.-.+||-..+++++.+++.|.
T Consensus 206 da~--kf-S~yF~~a~i~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~ 279 (674)
T KOG0922 206 DAE--KF-SEYFNNAPILTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLR 279 (674)
T ss_pred CHH--HH-HHHHCCCCEEEECCCCCC---EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 489--99-998647956766688775---568863688504678999999998704899878999378889999999999
Q ss_pred HC----CCC----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE--------EECC--------
Q ss_conf 22----666----30104899999999998665448814998538650014578873389--------7058--------
Q gi|254780601|r 266 EH----LFQ----VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI--------HAEL-------- 321 (573)
Q Consensus 266 ~~----g~~----~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi--------n~d~-------- 321 (573)
+. +-. ..++||.|+.++..++++.--.|.-+|.++|++|.--|-|++|.+|| .|+.
T Consensus 280 e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922 280 ERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred HHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCEEEEECCEEEEEEEECCEEEEECCCCEEEEEECCCCCCCCEE
T ss_conf 87653124577422221045887876200267999862489972312101773562899738736777635646744126
Q ss_pred --CCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHH----------------HHHHHHHC----CCCCCCCCCHHHHH
Q ss_conf --874789998603010378886025640599999999----------------99998506----64105689999988
Q gi|254780601|r 322 --SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE----------------RLFREANV----SVVWEPAPSVEAIR 379 (573)
Q Consensus 322 --P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~----------------~i~~~~~~----~~~~~~~Ps~eeI~ 379 (573)
|-+..+-.+|+||+||-| .|+|+-||++++...+. -.++..++ .+.+...|+.+.+.
T Consensus 360 v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~ 438 (674)
T KOG0922 360 VVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALE 438 (674)
T ss_pred EEECHHHHHHHHCCCCCCCC-CCEEEEEEEHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 77212987753324578988-94488850087785366678971444030889999996489985468789999859999
Q ss_pred HH
Q ss_conf 88
Q gi|254780601|r 380 ER 381 (573)
Q Consensus 380 ~~ 381 (573)
..
T Consensus 439 ~A 440 (674)
T KOG0922 439 EA 440 (674)
T ss_pred HH
T ss_conf 99
No 103
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.8e-13 Score=109.78 Aligned_cols=320 Identities=21% Similarity=0.230 Sum_probs=194.1
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|. .|.++|-..--.+.+|+ |+.-+||-||||.-.||+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 78 ~lg~-r~~dvQl~gg~~lh~g~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 145 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSG---------KGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 6489-76468999899984685--1465178855999999999987559---------9709972653655866999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++...... .-.|||+.||..-+ .|+|.- ...-...+.|.|+||||-+| |-
T Consensus 146 ~y~~lGltvg~i~~~~~~~~r~~--aY~~DitY~tn~e~gFDyLRDnm~~~~~~~vqr~~~~aivDEvDSiLIDEArtPL 223 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRA--AYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred HHHHHCCEEEECCCCCCHHHHHH--HCCCCCEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 99981976855189999799997--4668864435764335345733104878843667764787423555531256853
Q ss_pred ----------HHHHHHHHHHHHC--------------------CCCCCEEEEECC-------C--------------CC-
Q ss_conf ----------0123578887521--------------------433422563111-------1--------------22-
Q gi|254780601|r 164 ----------GFRDDIEFILDSS--------------------PKKRRMLMFSAT-------I--------------SP- 191 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~--------------------p~~~q~~l~SAT-------~--------------~~- 191 (573)
.....+..+...+ .+.++..|.-+- + +.
T Consensus 224 iIsg~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~y~~de~~~~v~lt~~G~~~~e~~l~~~~~~~~~~~l~~~~~ 303 (913)
T PRK13103 224 IISGQAEDSSKLYIEINRLIPRLTQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHN 303 (913)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 65068764257899999999999876654320236678668714656587554479999999876765555310034110
Q ss_pred -----CCHH-H-HHH-HCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--
Q ss_conf -----2001-1-112-1012333------------------------------------323332325665200-000--
Q gi|254780601|r 192 -----AITT-L-AKN-YQKDAVR------------------------------------VNIASENRQHSDIDY-RAV-- 224 (573)
Q Consensus 192 -----~i~~-l-~~~-~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-- 224 (573)
.|.. | |.. |.++--. |.+..++.|...|+. -|+
T Consensus 304 ~~~~~~v~~aL~A~~l~~~d~~YiV~d~~v~ivDe~TGR~m~grr~s~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~ 383 (913)
T PRK13103 304 LGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRL 383 (913)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 24222477889999998669868998890899868888768898165368999998748977888730233019988734
Q ss_pred --------------------------------------------CCCCCHHHHHHHHCC-CC-CCCCEEEEECCCHHHHH
Q ss_conf --------------------------------------------000000245542001-02-35641677513023345
Q gi|254780601|r 225 --------------------------------------------LVALSDRDNAIVNIL-RY-HGAKNAIVFCSTRASVS 258 (573)
Q Consensus 225 --------------------------------------------~v~~~~k~~~l~~ll-~~-~~~~~~ivF~~t~~~~~ 258 (573)
+....+|+.++..-+ +. ....-++|-+.|....+
T Consensus 384 y~klsGMTGTa~te~~Ef~~iY~l~Vv~IPtn~p~~R~d~~d~iy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~Sve~SE 463 (913)
T PRK13103 384 YNKLSGMTGTADTEAFEFRQIYGLDVMVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred CCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 50421675673868999999868866982799986101199869838999999999999999974998899627468899
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC----------------------
Q ss_conf 65555542266630104899999999998665448814998538650014578---87----------------------
Q gi|254780601|r 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL---------------------- 313 (573)
Q Consensus 259 ~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v---------------------- 313 (573)
.|+..|...|++...|+.. +.+|+.-+=.=--..-.|-|||+.|.||-||. +.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk--~~~~EA~Iia~AG~~gaVTIATNMAGRGTDI~LGgn~e~~~~~~~~~~~e~~~~~~~~~ 541 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAK--YHEKEAEIIAQAGAPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHHCCCCCEEECCC--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999769975120488--73799999983378997897164568986952688603444310367677899999999
Q ss_pred ------------CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf ------------338970588747899986030103788860256405999
Q gi|254780601|r 314 ------------ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 ------------~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
=|||--.--.+---=-+=-||+||-|-.|.+.+|++=+|
T Consensus 542 ~~~~~~V~~~GGL~VIgterheSrRiDnQLrGRsGRQGDPG~s~F~lSleD 592 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECH
T ss_conf 988778986298499961655212578786074356899986548997046
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=2.4e-13 Score=108.92 Aligned_cols=320 Identities=20% Similarity=0.229 Sum_probs=193.4
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|- .|.++|-..--.+.+|+ |+.-+||-||||+-.||+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 78 ~lg~-r~~dvQl~gg~~lh~g~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 145 (896)
T PRK13104 78 TLGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---------RGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 6389-76479999899984585--1465178855999999999987559---------9719972653544644999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.+++.+++......+ -.|||+.||..-+ .|+|.- ...-.....|.|+||||-.| |-
T Consensus 146 ~y~~lGltvg~i~~~~~~~~r~~a--Y~~DitY~Tn~e~gFDyLrDnm~~~~~~~vqr~~~~aivDEvDSiLiDEArtPL 223 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HCCCEEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999819767341899997999997--149937967865415235721113847625667764787422354321356874
Q ss_pred ----------HHHHHHHHHHHHCC---------------CCCCEEEEECC-------CC--------------C------
Q ss_conf ----------01235788875214---------------33422563111-------12--------------2------
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP---------------KKRRMLMFSAT-------IS--------------P------ 191 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p---------------~~~q~~l~SAT-------~~--------------~------ 191 (573)
.....+..+...+. +.++..|.-+- +. .
T Consensus 224 iisg~~~~~~~~y~~~~~~~~~l~~~~~~~~~~dy~~de~~~~v~lt~~G~~~~e~~l~~~~~~~~~~~ly~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 75278876448999999999999862211677777987477645683546799999974521357766535513458998
Q ss_pred CCH-HHH-H-HHCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC-------
Q ss_conf 200-111-1-21012333------------------------------------323332325665200-000-------
Q gi|254780601|r 192 AIT-TLA-K-NYQKDAVR------------------------------------VNIASENRQHSDIDY-RAV------- 224 (573)
Q Consensus 192 ~i~-~l~-~-~~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~------- 224 (573)
.|. .|- . .|.++--. |.+..++.|...|+. -|+
T Consensus 304 ~v~~al~A~~l~~~d~~YiV~d~~v~ivDe~TGR~m~grr~s~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~kls 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHC
T ss_conf 78899999999966984899889499986888877889816536899999872887788872247775999885450422
Q ss_pred ---------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHH
Q ss_conf ---------------------------------------000000245542001-023-564167751302334565555
Q gi|254780601|r 225 ---------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKV 263 (573)
Q Consensus 225 ---------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~ 263 (573)
+....+|+.++..-+ +.+ ...-++|-+.|....+.|+..
T Consensus 384 GMTGTa~te~~Ef~~iY~l~Vv~IPtn~p~~R~d~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~ 463 (896)
T PRK13104 384 GMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRRQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf 67567676899999986887698589999612379986972899999999999999997599789934857989999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC---CCC---------------------------
Q ss_conf 54226663010489999999999866544881499853865001457---887---------------------------
Q gi|254780601|r 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL---PDL--------------------------- 313 (573)
Q Consensus 264 L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi---~~v--------------------------- 313 (573)
|...|++...|+.. +.+|+..+=.=--..-.|-|||+.|.||-|| +++
T Consensus 464 L~~~gi~h~VLNAk--~~~~EA~Iia~AG~~gaVTIATNMAGRGTDI~LGg~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 541 (896)
T PRK13104 464 LKKENIKHQVLNAK--FHEKEAQIIAEAGRPGAVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRH 541 (896)
T ss_pred HHHCCCCHHHHCCC--CHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99869924652678--7478999998338999689716556888582178751244430565511667999999999853
Q ss_pred --------CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf --------338970588747899986030103788860256405999
Q gi|254780601|r 314 --------ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 --------~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
=|||--.--.+---=-+=-||+||-|-.|.+.+|++=+|
T Consensus 542 ~~v~~~GGL~VigterhesrRiD~QLrGRaGRQGDPG~s~F~lSleD 588 (896)
T PRK13104 542 DEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 34420587289860433124677786053245689986326653337
No 105
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=99.68 E-value=4.5e-15 Score=120.56 Aligned_cols=304 Identities=25% Similarity=0.337 Sum_probs=205.2
Q ss_pred HHHHHHHC----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HHHHCCC
Q ss_conf 99999975----996999928987468999999999861042122556882799984998999999999999-8544698
Q gi|254780601|r 29 AILNPDLR----EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGV 103 (573)
Q Consensus 29 ~~ip~~l~----g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~-l~~~~~~ 103 (573)
.++|.+.. .--||..||||-|||.++=|.+|+.=-... -..|+|=|=|=-|.-|+.-+-+ ++...|=
T Consensus 5 ~vLP~Lr~al~~~~~vvL~APpGAGKsT~~PLaLL~~pW~~~--------~kIimLEPRRlAAR~~A~rlA~~LgE~VG~ 76 (858)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPWLIG--------GKIIMLEPRRLAARSAAQRLASQLGEEVGD 76 (858)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CEEEEECCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 676999998611765064167224711058899766264348--------807874744789999999999970889886
Q ss_pred EEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-C----CCCHHHHHHHHHHHHCCC
Q ss_conf 79999889987999996128975998223101332100012246431899961311-0----010012357888752143
Q gi|254780601|r 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-M----LDLGFRDDIEFILDSSPK 178 (573)
Q Consensus 104 ~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-m----l~~gf~~~i~~i~~~~p~ 178 (573)
+| |.-+.-|- .......|=|-|=|-|--||...- .|+.|..||+||.-| - |-+-|.=||...| -+
T Consensus 77 tV-----GyRvR~en-kVs~~TRlEvVTEGiLTRMlQ~DP-~L~GVg~liFDEFHERsL~aDLaLALaLdVQs~L---Rd 146 (858)
T TIGR01970 77 TV-----GYRVRLEN-KVSARTRLEVVTEGILTRMLQDDP-ELEGVGLLIFDEFHERSLDADLALALALDVQSAL---RD 146 (858)
T ss_pred CC-----CEEEECCC-CCCCCCCEEEEECCHHHHHCCCCC-CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_conf 20-----40577113-258775457872326877401688-8453523231102243467889999988533431---06
Q ss_pred C--CCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC-CCCCHHH-----HHHHHCCCCCCCCE----
Q ss_conf 3--4225631111222001111210123333233323256652000000-0000024-----55420010235641----
Q gi|254780601|r 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRD-----NAIVNILRYHGAKN---- 246 (573)
Q Consensus 179 ~--~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~-v~~~~k~-----~~l~~ll~~~~~~~---- 246 (573)
+ =..+++|||+..+ .|. ++|.+.=.| .+...++| |+-.|.- +...+.+ .++.+.|.. .+.+
T Consensus 147 DPPLkil~MSATLdg~--rLs-~LL~~Ap~v--~S~GR~fP-Ve~rY~~P~~~~e~l~~~~~r~v~~~La~-~~GSGPqd 219 (858)
T TIGR01970 147 DPPLKILIMSATLDGE--RLS-SLLPDAPVV--ESEGRSFP-VEIRYLPPLREDERLEDRVSRAVEHALAE-ESGSGPQD 219 (858)
T ss_pred CCCCEEHHCCCCCHHH--HHH-HHCCCCCEE--EECCCCCC-EECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCC
T ss_conf 8640000000263279--999-743302642--00787876-11022767875553347899999999961-67886330
Q ss_pred EEEECCCHHHHHHHHHHHHHC-C----CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE----
Q ss_conf 677513023345655555422-6----6630104899999999998665448814998538650014578873389----
Q gi|254780601|r 247 AIVFCSTRASVSRFTKVLAEH-L----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI---- 317 (573)
Q Consensus 247 ~ivF~~t~~~~~~l~~~L~~~-g----~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi---- 317 (573)
.+||---+.+...+.++|.+. + +..++|||.|+-++..++++-==+|.=+|..||+||.==|=|++|..||
T Consensus 220 ~LvFLPG~aEI~Rv~~~L~e~L~~rs~v~lcPLYG~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRvViDsGl 299 (858)
T TIGR01970 220 VLVFLPGQAEIRRVQEQLAERLDARSEVLLCPLYGELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRVVIDSGL 299 (858)
T ss_pred HHEECCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEEEEECCC
T ss_conf 10016877789999999999751787100057678889789998708774667343420001222100176358871565
Q ss_pred ----EECCCCCH----------HHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHH
Q ss_conf ----70588747----------899986030103788860256405999999999
Q gi|254780601|r 318 ----HAELSSNP----------ENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 (573)
Q Consensus 318 ----n~d~P~~~----------~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~ 358 (573)
.||+-.-+ .+=.+|.||.|| =..|+||=|++..|...+..
T Consensus 300 ~R~arFDP~sG~TRL~~~RisqASA~QRAGRAGR-lepGvc~RLw~~~q~~~l~~ 353 (858)
T TIGR01970 300 ARVARFDPKSGITRLETQRISQASATQRAGRAGR-LEPGVCYRLWSEEQHKRLAA 353 (858)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHEECCCHHHHHHHHC
T ss_conf 5676347888740244578897337651263322-11141112278689886320
No 106
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=2.2e-13 Score=109.20 Aligned_cols=322 Identities=20% Similarity=0.206 Sum_probs=198.0
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|. .|.++|-..--.+++|+ |+.-+||-||||.-.||+.-.-+.. -.+-|++..-=||.-=++.+..
T Consensus 85 ~lG~-r~ydVQliGg~~L~~G~--IaEM~TGEGKTL~atlpaylnAL~G---------kgVHvVTvNDYLA~RDaewm~p 152 (775)
T PRK12326 85 TLGL-RPFDVQLLGALRLLAGD--VVEMATGEGKTLAGAIAAAGYALGG---------RRVHVITVNDYLARRDAEWMGP 152 (775)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHHHHHHHH
T ss_conf 6389-86468999899984595--3676068858999999999996369---------9808982256878876999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-----HHHH--HCCCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-----3321--0001224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-----CDHI--RGKGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-----~d~~--~~~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++......+ -.|||+.||..-+ .|.+ ....+-.....|.|+||||-+| |-
T Consensus 153 iy~fLGLtvg~i~~~~~~~err~a--Y~~DItY~Tn~E~GFDYLRDnm~~~~~~~vqr~~~faIVDEvDSILIDEArTPL 230 (775)
T PRK12326 153 LLEAFGLTVGWITEESTAEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPL 230 (775)
T ss_pred HHHHHCCEECCCCCCCCHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCEEEEECCCHHHHHCCCCCE
T ss_conf 999829776537899997999984--468773115555324455132126988843677875998642000121357770
Q ss_pred ---H------HHHHHHHHHHHCCC---------CCCEEEEECCC--------------CCCCH--------HH-HHH-HC
Q ss_conf ---0------12357888752143---------34225631111--------------22200--------11-112-10
Q gi|254780601|r 164 ---G------FRDDIEFILDSSPK---------KRRMLMFSATI--------------SPAIT--------TL-AKN-YQ 201 (573)
Q Consensus 164 ---g------f~~~i~~i~~~~p~---------~~q~~l~SAT~--------------~~~i~--------~l-~~~-~~ 201 (573)
| -.-.+..+...+.+ .++..|..+-. +..+. .| |.. |.
T Consensus 231 IISG~~~~~~~~~~~~~~v~~L~~~~dy~iDe~~k~v~LTe~G~~~vE~~l~~~~ly~~~~~~~~l~~v~~AL~A~~l~~ 310 (775)
T PRK12326 231 VLAGTTHRETPRGEIIRLVRELKEGKDYTTDEDRRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTEVNVALHAHVLLQ 310 (775)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 65089877664999999998567888879854766442251389999997088764673217899999999998999885
Q ss_pred CCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--------------------
Q ss_conf 12333------------------------------------323332325665200-000--------------------
Q gi|254780601|r 202 KDAVR------------------------------------VNIASENRQHSDIDY-RAV-------------------- 224 (573)
Q Consensus 202 ~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-------------------- 224 (573)
+|--. |.+..++.+...|+. .|+
T Consensus 311 rDvdYIV~dg~V~IVDe~TGR~m~gRrwsdGLHQAiEAKEgv~i~~e~~tlAsIT~Qn~Fr~Y~kLsGMTGTA~t~~~Ef 390 (775)
T PRK12326 311 RDVHYIVRDGAVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALINRYPTVCGMTGTALAAGEQL 390 (775)
T ss_pred CCCCEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 79747998786899516778767898467306799999649876888731454279999975227537777616699999
Q ss_pred --------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --------------------------000000245542001-023-5641677513023345655555422666301048
Q gi|254780601|r 225 --------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276 (573)
Q Consensus 225 --------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg 276 (573)
+....+|+.++..-+ +.+ ...-++|-+.+....+.++..|...|+.+..|+.
T Consensus 391 ~~iY~L~V~~IPtn~P~~R~D~~D~vy~t~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNA 470 (775)
T PRK12326 391 RQFYKLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTRDVAESEELAERLVRRGVPAVVLNA 470 (775)
T ss_pred HHHHCCCEEEECCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 99748865991799984104588816469999999999999999975998899707189899999999876998302368
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC---------------CCEEEEECCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999999999986654488149985386500145788---------------73389705887478999860301037888
Q gi|254780601|r 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD---------------LELVIHAELSSNPENLLHRSGRTGRAGRK 341 (573)
Q Consensus 277 ~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~---------------v~~Vin~d~P~~~~~yvHR~GRtgRag~~ 341 (573)
. +.+++..+=.=--..-.|-|||+.|.||-||.= ==|||--.--.+---=-+=-||+||-|-.
T Consensus 471 k--~~~~EA~IIA~AG~~GaVTIATNMAGRGTDIkLGg~~e~~~~~V~elGGL~VIgterheSrRIDnQLrGRaGRQGDP 548 (775)
T PRK12326 471 K--NDAEEAAVIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADHDRVVELGGLHVVGTGRHRSQRLDNQLRGRAGRQGDP 548 (775)
T ss_pred C--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 9--72769999994599998798233678986841489722324789865990785214333467786762231237999
Q ss_pred CEEEEEECHHHHH
Q ss_conf 6025640599999
Q gi|254780601|r 342 GMSVFVIPQNMQR 354 (573)
Q Consensus 342 G~ai~l~~~~e~~ 354 (573)
|.+.+|++-+|.-
T Consensus 549 GsS~FflSLEDdL 561 (775)
T PRK12326 549 GSSVFFVSWEDDV 561 (775)
T ss_pred CCCEEEEEECHHH
T ss_conf 8615899703389
No 107
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=5.3e-13 Score=106.63 Aligned_cols=320 Identities=19% Similarity=0.215 Sum_probs=198.0
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|.. |.++|-..--.+.+|+ |+.-+||-||||+-.+|+.-.-+.. -.+-|++..-=||.-=++.+..
T Consensus 74 ~lg~r-~ydvQl~gg~~l~~G~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 141 (885)
T PRK12903 74 VLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALEG---------KGVIVSTVNEYLAERDAEEMGK 141 (885)
T ss_pred HCCCC-CCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHHHHHHHH
T ss_conf 61898-6378999899984595--1465068857999999999987469---------9808980645655855999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++......+ -.|||+.||..-+ .|+|.- ...-...+.|.|+||||-+| |-
T Consensus 142 ~y~~lGltvg~~~~~~~~~~r~~a--Y~~ditY~tn~e~gFDyLrDnm~~~~~~~vqr~~~~aIvDEvDSiLIDeArtPL 219 (885)
T PRK12903 142 VFKFLGLSVGINKANMDPNLKREA--YNCDITYSTHSELGFDYLRDNMVSSYEEKVQRGLNFCLIDEVDSILIDEARTPL 219 (885)
T ss_pred HHHHHCCEEEECCCCCCHHHHHHH--HCCCCEEECCCCEEECCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHCCCCCCC
T ss_conf 999829656011899997999998--569967977865030114001135837725889980366541144330467752
Q ss_pred ----------HHHHHHHHHHHHCC--------CCCCEEEEECCC-----------------CCCCHHH-----HHH-HCC
Q ss_conf ----------01235788875214--------334225631111-----------------2220011-----112-101
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP--------KKRRMLMFSATI-----------------SPAITTL-----AKN-YQK 202 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p--------~~~q~~l~SAT~-----------------~~~i~~l-----~~~-~~~ 202 (573)
.....+..+...+. +.++..|.-+-+ ...+..+ |.. |.+
T Consensus 220 iisg~~~~~~~~y~~~~~~~~~l~~~dy~id~~~~~v~lte~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~l~~~ 299 (885)
T PRK12903 220 IISGGKSNESNLYKAADQFVRTLEEDDYKIDEESKAIYLTEKGIKKANKFFKLDNLYAIENSELFHRIQNALRAHKVFKE 299 (885)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 57678988646999999986533656688631447764251158999984266444661157999999999999999856
Q ss_pred CCC------------------------------------CCCCCCCCCCCCCCCHH-CC---------------------
Q ss_conf 233------------------------------------33233323256652000-00---------------------
Q gi|254780601|r 203 DAV------------------------------------RVNIASENRQHSDIDYR-AV--------------------- 224 (573)
Q Consensus 203 ~p~------------------------------------~i~~~~~~~~~~~i~~~-~~--------------------- 224 (573)
+-. .|.+...+.+...|+.. |+
T Consensus 300 d~dYiV~d~~v~ivDe~TGR~m~grr~s~GLhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~kl~GmTGTa~te~~Ef~ 379 (885)
T PRK12903 300 GVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (885)
T ss_pred CCCEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHH
T ss_conf 97079977928998789886278880303689999987288779887313663099898646042267677788999999
Q ss_pred -------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------------------------000000245542001-023-56416775130233456555554226663010489
Q gi|254780601|r 225 -------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 (573)
Q Consensus 225 -------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~ 277 (573)
+.....|+.++..-+ +.+ ...-++|-+.|....+.++..|...|++...|+..
T Consensus 380 ~iY~l~v~~iPtn~p~~R~d~~d~vy~t~~~k~~av~~ei~~~~~~gqPvLvgt~sve~Se~ls~~L~~~~i~h~vLNAk 459 (885)
T PRK12903 380 DIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHEKGQPILIGTAQVEDSEQLHEYLLEANIPHTVLNAK 459 (885)
T ss_pred HHHCCEEEECCCCCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 98697369818999852142832310789999999999999998579988995684799999999998568770355468
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC-----CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 9999999998665448814998538650014578---87-----338970588747899986030103788860256405
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL-----ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v-----~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~ 349 (573)
+.+++..+=.=--..-.|-|||+.|.||-||. +| =|||--.-..+---=-+=-||+||-|-.|.+.+|++
T Consensus 460 --~~~~EA~Iia~AG~~g~VTiATNMAGRGTDI~Lg~~v~~~GGL~VigterhesrRiD~QLrGR~gRQGDpG~s~f~~S 537 (885)
T PRK12903 460 --QHAREAEIIAKAGQKGAITIATNMAGRGTDIKLSKGVLELGGLYVLGTEKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (885)
T ss_pred --CHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf --658899999954899918983766789968574165897298589842656204588886074346899973599997
Q ss_pred HHH
Q ss_conf 999
Q gi|254780601|r 350 QNM 352 (573)
Q Consensus 350 ~~e 352 (573)
-+|
T Consensus 538 leD 540 (885)
T PRK12903 538 LDD 540 (885)
T ss_pred CCH
T ss_conf 264
No 108
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=8.8e-13 Score=105.15 Aligned_cols=280 Identities=21% Similarity=0.221 Sum_probs=167.5
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+| -.|.++|-..=-.+.+|+ |+.-+||-||||.-.||+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 81 ~lg-~r~ydvQliGg~~Lh~G~--iaEM~TGEGKTL~atlp~ylnAL~G---------kgvHvvTvNdYLA~RDae~m~~ 148 (946)
T PRK12902 81 VLG-MRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTG---------KGVHVVTVNDYLARRDAEWMGQ 148 (946)
T ss_pred HCC-CCCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 548-975579999899984684--1354178847999999999986559---------9709972652656867999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++......+ -.|||+.||.--+ .|+|.- ..+-.....|.|+||||-.| |-
T Consensus 149 vy~fLGltvg~i~~~~~~~er~~a--Y~~DItY~Tn~E~gFDYLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPL 226 (946)
T PRK12902 149 VHRFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPL 226 (946)
T ss_pred HHHHHCCEEEEECCCCCHHHHHHH--HCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999819778354899898999998--589827978887577235304478868843879965898542566543246764
Q ss_pred ---H-------HHHHHHHHHHHCC--------------------CCCCEEEEECCCC----------------CC---CH
Q ss_conf ---0-------1235788875214--------------------3342256311112----------------22---00
Q gi|254780601|r 164 ---G-------FRDDIEFILDSSP--------------------KKRRMLMFSATIS----------------PA---IT 194 (573)
Q Consensus 164 ---g-------f~~~i~~i~~~~p--------------------~~~q~~l~SAT~~----------------~~---i~ 194 (573)
| .......+...+- +.++..|.-+-+. +. |.
T Consensus 227 IISg~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~dy~idek~~~v~lTe~G~~~~e~~l~~~~ly~~~~~~~~~i~ 306 (946)
T PRK12902 227 IISGQVERPQEKYQKAAEVAAALQRAAELGKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPKDPWAHYIF 306 (946)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 64178876548899999999999986541013468888879875767331041469999987330223686455999999
Q ss_pred H-H-HHH-HCCCCC------------------------------------CCCCCCCCCCCCCCCH-HCC----------
Q ss_conf 1-1-112-101233------------------------------------3323332325665200-000----------
Q gi|254780601|r 195 T-L-AKN-YQKDAV------------------------------------RVNIASENRQHSDIDY-RAV---------- 224 (573)
Q Consensus 195 ~-l-~~~-~~~~p~------------------------------------~i~~~~~~~~~~~i~~-~~~---------- 224 (573)
. | |+. |.+|-- .|.+..++.+...|+. -|+
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~v~IvDefTGR~m~gRr~s~GLHQAiEAKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (946)
T PRK12902 307 NALKAKELFIKDVNYIVRNGEAVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMT 386 (946)
T ss_pred HHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHCHHHCCCC
T ss_conf 99999998846981899899899986888877778814246899999872898788881002211878986461632685
Q ss_pred ------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf ------------------------------------000000245542001-023-564167751302334565555542
Q gi|254780601|r 225 ------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAE 266 (573)
Q Consensus 225 ------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~ 266 (573)
+.....|+.++..-+ +.+ ...-++|-+.|....+.|+..|..
T Consensus 387 GTA~te~~Ef~~iY~l~Vv~IPTn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLVGT~SVe~SE~ls~lL~~ 466 (946)
T PRK12902 387 GTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLAE 466 (946)
T ss_pred CCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 67587999999986886698589998424627002017999999999999999975899889972757989999999985
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 26663010489999999999866544881499853865001457
Q gi|254780601|r 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310 (573)
Q Consensus 267 ~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi 310 (573)
.|++...|+..-...+|+..+=.=--..-.|-|||+.|.||-||
T Consensus 467 ~gi~h~VLNAk~~n~~~EAeIIA~AG~~gaVTIATNMAGRGTDI 510 (946)
T PRK12902 467 QGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMAGRGTDI 510 (946)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCE
T ss_conf 58862032578644278999999469999689745446898695
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=9.2e-13 Score=105.01 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78989999999997599699992898746899999999986104212255688279998499899999999999985446
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~ 101 (573)
.|.+||-..=-.+.+|+ |+.-+||-||||.-.||+.-.-+.. --+-|++..-=||.-=++.+..++.++
T Consensus 94 ~~ydvQliGg~~Lh~G~--IaEM~TGEGKTLvatlp~ylnaL~G---------kgvHvvTvNdYLA~RDae~m~~vy~fL 162 (983)
T PRK12900 94 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTG---------RGVHVVTVNDYLAQRDKEWMNPVFEFH 162 (983)
T ss_pred CCCCHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCCEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 77746999799983683--1455178858999999999986369---------982898145676786799999999984
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC
Q ss_conf 9879999889987999996128975998223101-332100------01224643189996131100
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml 161 (573)
|+.|.++..+++......+ -.|||+.||-.-+ .|+|.- ...-...+.|.|+||+|-+|
T Consensus 163 Glsvg~i~~~~~~~err~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqr~~~~aIVDEvDSiL 227 (983)
T PRK12900 163 GLSVGVILNSMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGSPEEMVQRDFYFAIVDEVDSVL 227 (983)
T ss_pred CCEEEEECCCCCHHHHHHH--HCCCCEEECCCCCCCCCCHHCCCCCHHHHCCCCCCEEEEECHHHHH
T ss_conf 9777030899998999998--7599578789854240210044778688427888558984415664
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.8e-12 Score=100.83 Aligned_cols=320 Identities=20% Similarity=0.238 Sum_probs=190.7
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
.+|.. |.++|-..=-.+.+|+ |+.-+||-||||.-.||+.-.-+.. --+-|++..-=||.-=++.+..
T Consensus 78 ~lg~r-~ydvQl~gg~~Lh~G~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 145 (908)
T PRK13107 78 VFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTG---------KGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred HCCCC-CCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 63897-5479999899984695--1465178855999999999987559---------9709972653554754999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
++.++|+.|.++..+++......+ -.|||+.||.--+ .|+|.- ...-...+.|.|+||||-.| |-
T Consensus 146 vy~~lGlsvg~i~~~~~~~er~~a--Y~~DitY~Tn~e~gFDYLRDnm~~~~~~~vqr~~~~aivDEvDSiLIDEArtPL 223 (908)
T PRK13107 146 LFEFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred HHHHHCCEEEECCCCCCHHHHHHH--CCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999819757331799996999984--568864535764234235743015758753567764887422354321356875
Q ss_pred ---H-------HHHHHHHHHHHC--------------------CCCCCEEEEECCC---------------------CCC
Q ss_conf ---0-------123578887521--------------------4334225631111---------------------222
Q gi|254780601|r 164 ---G-------FRDDIEFILDSS--------------------PKKRRMLMFSATI---------------------SPA 192 (573)
Q Consensus 164 ---g-------f~~~i~~i~~~~--------------------p~~~q~~l~SAT~---------------------~~~ 192 (573)
| ....+..+...+ .+.++..|.-.-. +..
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~~dek~~~v~lt~~G~~~~e~~~~~~~~~~~~~~ly~~~~ 303 (908)
T PRK13107 224 IISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAAN 303 (908)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 75178875428899999999999998764222016666768843777377605179999998765676556543267001
Q ss_pred ------CH-HH-HHH-HCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--
Q ss_conf ------00-11-112-1012333------------------------------------323332325665200-000--
Q gi|254780601|r 193 ------IT-TL-AKN-YQKDAVR------------------------------------VNIASENRQHSDIDY-RAV-- 224 (573)
Q Consensus 193 ------i~-~l-~~~-~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-- 224 (573)
|. .| |.. |.++--. |.+..++.|...|+. -|+
T Consensus 304 ~~~~~~v~~aL~A~~l~~~d~dYiV~d~~v~ivDe~TGR~m~gRr~s~GLHQaiEaKE~v~i~~e~~t~A~iT~Qn~Fr~ 383 (908)
T PRK13107 304 ISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQ 383 (908)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 06777799999999998579868997896899747878778898165268999998749977888721477759988844
Q ss_pred --------------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHH
Q ss_conf --------------------------------------------000000245542001-023-5641677513023345
Q gi|254780601|r 225 --------------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVS 258 (573)
Q Consensus 225 --------------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~ 258 (573)
+.....|+.++..-+ +.+ ...-++|-+.|....+
T Consensus 384 y~klsGMTGTA~te~~Ef~~iY~l~Vv~iPtn~p~~R~d~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE 463 (908)
T PRK13107 384 YEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred CHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 51521775675768999999868866984799985025089869758999999999999999975998899505289999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC----------------------
Q ss_conf 65555542266630104899999999998665448814998538650014578---87----------------------
Q gi|254780601|r 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL---------------------- 313 (573)
Q Consensus 259 ~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v---------------------- 313 (573)
.|+..|...|++...|+.. +.+|+..+=.=--..-.|-|||+.|.||-||. +.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk--~h~~EA~Iia~AG~~gaVTIATNMAGRGTDI~LGGn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAK--FHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCCCEECCC--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999997467853010488--76889999995499998798333678986842588620213320286487899999999
Q ss_pred ------------CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf ------------338970588747899986030103788860256405999
Q gi|254780601|r 314 ------------ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 ------------~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
=|||--.--.+---=-+=-||+||-|-.|.+.+|++=+|
T Consensus 542 ~~~~~~V~~~GGL~VigterhesrRiDnQLrGRsgRQGDpG~srFflSLED 592 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 886668986598089851433124677776122235789985336531328
No 111
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=99.62 E-value=1.4e-14 Score=117.30 Aligned_cols=329 Identities=22% Similarity=0.356 Sum_probs=210.1
Q ss_pred HHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC--CCHHHHHHHHHHH-HHHHHHCC
Q ss_conf 999999997599-6999928987468999999999861042122556882799984--9989999999999-99854469
Q gi|254780601|r 27 QEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA--PTRELAVQVGREL-EWLYAKTG 102 (573)
Q Consensus 27 Q~~~ip~~l~g~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~--PTrELa~Qv~~~~-~~l~~~~~ 102 (573)
.++.|..++..+ =||+...||||||. -||=|+. +-- .+.+.+|=. |=|=-|.-|++-+ .-|+..+|
T Consensus 73 kRedI~~AI~~nQVviiAGETGSGKTT--QLPKICL---ELG-----rG~~GlIGHTQPRRlAAR~VA~R~AeELgtplG 142 (1320)
T TIGR01967 73 KREDIAKAIAENQVVIIAGETGSGKTT--QLPKICL---ELG-----RGSRGLIGHTQPRRLAARSVAERVAEELGTPLG 142 (1320)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCCC--CCHHHHH---HHC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 189999999848989997244876202--3216777---542-----787654124714688999999999998388988
Q ss_pred CEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-CCCCHHH-HHHHHHHHHCCCCC
Q ss_conf 879999889987999996128975998223101332100012246431899961311-0010012-35788875214334
Q gi|254780601|r 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-MLDLGFR-DDIEFILDSSPKKR 180 (573)
Q Consensus 103 ~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-ml~~gf~-~~i~~i~~~~p~~~ 180 (573)
-.|.=- .-+.+| ++...-|=+=|=|=|+-=+.+.- .|+.-.++|||||-| -||--|. .-++.|+..-|+-+
T Consensus 143 e~VGYk---VRF~D~---v~~~t~VKLmTDGiLLAE~Q~DR-fL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~rRPDLK 215 (1320)
T TIGR01967 143 ELVGYK---VRFEDQ---VSSNTLVKLMTDGILLAETQQDR-FLERYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 215 (1320)
T ss_pred CCCCCE---EEECCC---CCCCCEEEEHHHHHHHHHHHHHH-HHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 613203---663142---68854363032235899852002-22106733651123112338899988876326688652
Q ss_pred CEEEEECCCCCCCHHHHHHHCCC-----CCCCCCCCCCCCCCCCCHHCCC----------CCCCHHHHHHHHCCC---CC
Q ss_conf 22563111122200111121012-----3333233323256652000000----------000002455420010---23
Q gi|254780601|r 181 RMLMFSATISPAITTLAKNYQKD-----AVRVNIASENRQHSDIDYRAVL----------VALSDRDNAIVNILR---YH 242 (573)
Q Consensus 181 q~~l~SAT~~~~i~~l~~~~~~~-----p~~i~~~~~~~~~~~i~~~~~~----------v~~~~k~~~l~~ll~---~~ 242 (573)
.+..|||+.. +++++-|=+- | .|.|...+-.+ .|.+.=+. +...+.+++|+.-++ .+
T Consensus 216 -iIITSATID~--ERFs~HFn~AeGkPaP-IIEVSGRTyPV-e~RYRPL~~~~~~~Gnqi~~d~d~~~ai~~AvdEL~~e 290 (1320)
T TIGR01967 216 -IIITSATIDP--ERFSRHFNNAEGKPAP-IIEVSGRTYPV-EVRYRPLVEEQEDDGNQIVIDLDQLEAILAAVDELVAE 290 (1320)
T ss_pred -EEEECCCCCH--HHHHHHHCCCCCCCCC-EEEECCCCCCC-CEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf -5740023574--4687862278889887-55527854665-11116876444887770410112788999999999742
Q ss_pred C------CCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 5------6416775130233456555554226---663010489999999999866544881499853865001457887
Q gi|254780601|r 243 G------AKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 (573)
Q Consensus 243 ~------~~~~ivF~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v 313 (573)
. |.=+|||.+--.+.-+-++.|+++. ..+.+|++-||.+|..++++.= +| =+|+.||+||.==|=||+|
T Consensus 291 ~~~eGkGPGDiLIFlpGEREIRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~RvF~pH-sG-RRIVLaTNVAETSLTVPGI 368 (1320)
T TIGR01967 291 GPDEGKGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SG-RRIVLATNVAETSLTVPGI 368 (1320)
T ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHCCHHHCCCCCCCC-CC-CEEEEECCHHHHHCCCCCC
T ss_conf 755578997267637888636899999844687870440552215864474400685-96-2345330101330578871
Q ss_pred CEEEEECCCC-CH-----------------HHHHHHHCCCCCCCCCCEEEEEECHHHH--------------HHHHHHHH
Q ss_conf 3389705887-47-----------------8999860301037888602564059999--------------99999999
Q gi|254780601|r 314 ELVIHAELSS-NP-----------------ENLLHRSGRTGRAGRKGMSVFVIPQNMQ--------------RRAERLFR 361 (573)
Q Consensus 314 ~~Vin~d~P~-~~-----------------~~yvHR~GRtgRag~~G~ai~l~~~~e~--------------~~~~~i~~ 361 (573)
.+||=-..-. += .+==+|-|||||- ..|.||=||+++|. ...--|++
T Consensus 369 ~YVIDtGtARiSRYS~RTKVQRLPIEpISQASANQRkGRCGRV-~~GICIRLYSE~DFnsRP~FTDPEILRTNLAsVIL~ 447 (1320)
T TIGR01967 369 RYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-APGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQ 447 (1320)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC-CCCEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1135688532000100330133676603122320068875414-777047557757340787545720767758999999
Q ss_pred HHHC------CCCCCCCCCHHHHHH
Q ss_conf 8506------641056899999888
Q gi|254780601|r 362 EANV------SVVWEPAPSVEAIRE 380 (573)
Q Consensus 362 ~~~~------~~~~~~~Ps~eeI~~ 380 (573)
+... .|++...|....|.+
T Consensus 448 M~aL~LGDI~~FPFieaPd~r~IrD 472 (1320)
T TIGR01967 448 MLALRLGDIAAFPFIEAPDPRAIRD 472 (1320)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 8741477865667888747865677
No 112
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=1e-11 Score=97.98 Aligned_cols=91 Identities=25% Similarity=0.293 Sum_probs=58.9
Q ss_pred HHHHHHH--CCCCCCCHHHHHHH---HHHHC----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 9999997--87987898999999---99975----996999928987468999999999861042122556882799984
Q gi|254780601|r 11 IGEALSE--RGYVNLTSVQEAIL---NPDLR----EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 11 l~~~l~~--~g~~~pt~iQ~~~i---p~~l~----g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
..++|.+ -||+ |-|=|.+-. -..+. ++-+++.|+||||||+||++|.+..-.... -.++|-+
T Consensus 13 ~~~~l~~~~~gfe-~R~~Q~~Ma~~V~~al~~~~~~~~l~iEAgTGtGKTlaYL~Pai~~a~~~~--------~~vvIST 83 (697)
T PRK11747 13 AYKALQEQLPGFI-PRAGQRQMIAEVAKTLAGEYGRHILVIEAGTGVGKSLAYLLAGIPIARAEK--------KKLVIST 83 (697)
T ss_pred HHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC--------CCEEEEC
T ss_conf 9999998688997-187899999999999616667866999899972089999999999999829--------9799988
Q ss_pred CCHHHHHHHH-HHHHHHHHHC--CCEEEEEEC
Q ss_conf 9989999999-9999985446--987999988
Q gi|254780601|r 82 PTRELAVQVG-RELEWLYAKT--GVVVAVCIG 110 (573)
Q Consensus 82 PTrELa~Qv~-~~~~~l~~~~--~~~v~~~~g 110 (573)
+|.-|=.|+. +.+-.+.+.+ .++++.+=|
T Consensus 84 ~T~~LQeQL~~kDlP~L~~~l~~~~~~~l~KG 115 (697)
T PRK11747 84 ATVALQEQLVHKDLPLLLKISGLDFKFALAKG 115 (697)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 98899999987079999986399942999989
No 113
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.3e-11 Score=97.33 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 87898999999999759969999289874689999999998610421225568827999849989999999999998544
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~ 100 (573)
-.|.++|-..=-.+.+|+ |+.-+||-||||.-.+|+.-.-+.. --+-|++..-=||.-=++.+..++.+
T Consensus 93 mrhydVQliGgivLh~G~--IAEM~TGEGKTLvAtlpayLnAL~G---------kgVHVVTVNDYLA~RDaewMg~iy~f 161 (969)
T PRK12899 93 MVPYDVQILGAIAMHKGF--ITEMQTGEGKTLTAVMPLYLNALTG---------KPVHLVTVNDYLAQRDCEWVGSVLRW 161 (969)
T ss_pred CCCCCHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCCEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 776517999899982684--1355178848999999999986459---------97099726436568669999999998
Q ss_pred CCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHCCCC-------CCCCCEEEEEECCCCCC
Q ss_conf 69879999889987999996128975998223101-332100012-------24643189996131100
Q gi|254780601|r 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRGKGL-------NISHLKAVVLDEADEML 161 (573)
Q Consensus 101 ~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~~~l-------~l~~v~~lVlDEaD~ml 161 (573)
+|+.|.++..+++......+ -.|||.-||-.-+ .|+|.-..+ -.....|.|+||||-.|
T Consensus 162 LGLtVg~i~~~~~~~eRr~a--Y~~DItYgTn~E~GFDYLRDN~~a~~~~~~vqR~~~faIVDEvDSIL 228 (969)
T PRK12899 162 LGLTTGVLVSGSPLEKRKAI--YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (969)
T ss_pred HCCEEEEECCCCCHHHHHHH--HCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCEE
T ss_conf 09778563899898999998--66996787886667640137644268677517777446752331202
No 114
>KOG2340 consensus
Probab=99.56 E-value=4.1e-13 Score=107.39 Aligned_cols=340 Identities=18% Similarity=0.208 Sum_probs=217.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCC-CCCH--HHHHHHHHHHHHHCCC-------CC---------------CCCCCC
Q ss_conf 987898999999999759969999289-8746--8999999999861042-------12---------------255688
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREKDVLVSAQT-GSGK--TVAFGLALASTLLAEN-------DR---------------FSPASA 74 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~d~i~~a~T-GsGK--T~af~lp~l~~l~~~~-------~~---------------~~~~~~ 74 (573)
=...|+.|.+-..+..+=+|++---.| +.|+ +--|+|-+|++|.... .+ -+.-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCCCCC
T ss_conf 57662889999999976554301245545651244457999999999888887524276655423789816666447777
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHC-CCEE--------EEEECCC------------------------------CHH
Q ss_conf 279998499899999999999985446-9879--------9998899------------------------------879
Q gi|254780601|r 75 PLALAIAPTRELAVQVGRELEWLYAKT-GVVV--------AVCIGGV------------------------------SVH 115 (573)
Q Consensus 75 ~~~lil~PTrELa~Qv~~~~~~l~~~~-~~~v--------~~~~gg~------------------------------~~~ 115 (573)
|.+||+|||||-|..|-+-+..+..+. .-++ .--|+|- .+.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 52899942608899999999998527655531000032201010798455888889842389983378742111337888
Q ss_pred HHHHHHC---CCCEEEEECCCCHHHHHH------CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC---CCC----
Q ss_conf 9999612---897599822310133210------001224643189996131100100123578887521---433----
Q gi|254780601|r 116 RERRDLQ---NGAHIVVGTPGRLCDHIR------GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK---- 179 (573)
Q Consensus 116 ~q~~~l~---~~~~iiv~TPgrl~d~~~------~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~---p~~---- 179 (573)
+..-.|= ...||+||.|--|.-.+. +..=.|+.+..+|+|-||-||-.+ .+.+..|+.++ |.+
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999998654116768754412455523777633320245321432231688999860-999999998860485324588
Q ss_pred -----------------CCEEEEECCCCCCCHHHHHHHCCCCC-CCCCCCCCCC------CCCCCHHCCCCCC-------
Q ss_conf -----------------42256311112220011112101233-3323332325------6652000000000-------
Q gi|254780601|r 180 -----------------RRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQ------HSDIDYRAVLVAL------- 228 (573)
Q Consensus 180 -----------------~q~~l~SAT~~~~i~~l~~~~~~~p~-~i~~~~~~~~------~~~i~~~~~~v~~------- 228 (573)
|||+|||+--.+.+..+-..++.|.. .|.......+ .--|.|.+..+..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred CHHHEEHHEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHCCCHHHHHHHHEECCCCCCCC
T ss_conf 73540110146278898988887751358889999986665325133134667774120245155465420216723471
Q ss_pred CHHHHHHH-HCCCCC-C--CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 00245542-001023-5--6416775130233456555554226663010489999999999866544881499853865
Q gi|254780601|r 229 SDRDNAIV-NILRYH-G--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 (573)
Q Consensus 229 ~~k~~~l~-~ll~~~-~--~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDva 304 (573)
..++.+.. .|+-.. + ...++|+..+--+--.+-.++...+++...+|-=-++++=.++=+-|-.|..++|+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred HHHHHHHHHHHCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 07889888764410024566744999354266789987765640206777655547536688899873582499974343
Q ss_pred C--CCCCCCCCCEEEEECCCCCHHHHHHHH---CCCCCCCC----CCEEEEEECHHHHHHHHHHH
Q ss_conf 0--014578873389705887478999860---30103788----86025640599999999999
Q gi|254780601|r 305 A--RGIDLPDLELVIHAELSSNPENLLHRS---GRTGRAGR----KGMSVFVIPQNMQRRAERLF 360 (573)
Q Consensus 305 a--RGiDi~~v~~Vin~d~P~~~~~yvHR~---GRtgRag~----~G~ai~l~~~~e~~~~~~i~ 360 (573)
- |--+|.+|.-||-|.+|..+.-|.-=+ +||.--|+ .-+|..++++-|.-.+..|-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred HHHHHHEECCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECHHHHHHHHHH
T ss_conf 45433110240258874599984799999866666530688655413788775500257788766
No 115
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.55 E-value=1.2e-11 Score=97.49 Aligned_cols=87 Identities=23% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCCCCCCCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--
Q ss_conf 20010235641677513023345655555422-666301048999-99999998665448814998538650014578--
Q gi|254780601|r 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELS-QQERSNALQMMRDGRARVCIATDVAARGIDLP-- 311 (573)
Q Consensus 236 ~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~-g~~~~~lhg~~~-q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~-- 311 (573)
..+++.. ..+++|.|.+.+..+.+++.|... .+....-+++.+ ..-+.+.++.|+++.-.||++|+-.--|+|||
T Consensus 463 ~~li~~~-~Gr~LvLFTS~r~~~~~ae~l~~~l~~~~l~Qge~~~~~~l~~~~~~~f~~~~~svLfGT~SfWEGVDvpG~ 541 (636)
T TIGR03117 463 AAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHK 541 (636)
T ss_pred HHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 9999870-798899704099999999999722788658745764035689999998727899689867764066257886
Q ss_pred ------C--CCEEEEECCCC
Q ss_conf ------8--73389705887
Q gi|254780601|r 312 ------D--LELVIHAELSS 323 (573)
Q Consensus 312 ------~--v~~Vin~d~P~ 323 (573)
+ +++||-.-+|.
T Consensus 542 ~~~~~~Gd~Ls~VII~rLPF 561 (636)
T TIGR03117 542 PVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCCCCCCCEEEEEECCCC
T ss_conf 66788777420665756998
No 116
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=6.9e-12 Score=99.12 Aligned_cols=127 Identities=24% Similarity=0.180 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89899999999975996999928987468999999999861042122556882799984998999999999999854469
Q gi|254780601|r 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG 102 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~ 102 (573)
|..||-..=-.+.+|+ |+.-+||-||||.-.||+.-.-+... -+-|++..-=||.-=++.+..++.++|
T Consensus 172 hydVQliGg~~Lh~G~--IAEM~TGEGKTLvatlp~yLnAL~Gk---------gVHvVTvNDYLA~RDaewmg~iy~fLG 240 (1111)
T PRK12901 172 HYDVQLIGGVVLHKGK--IAEMATGEGKTLVATLPVFLNALTGN---------GVHVVTVNDYLAKRDSEWMGPLYMFHG 240 (1111)
T ss_pred CCCHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCCC---------CEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 6557998799982685--15650688579999999999973699---------808983156778875998899999949
Q ss_pred CEEEEEECCCCHHHHHHHHCCCCEEEEECCCC-----HHHHHH--CCCCCCCCCEEEEEECCCCCC
Q ss_conf 87999988998799999612897599822310-----133210--001224643189996131100
Q gi|254780601|r 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR-----LCDHIR--GKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 103 ~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgr-----l~d~~~--~~~l~l~~v~~lVlDEaD~ml 161 (573)
+.|.++...++-..+++. .-.|||+.||--- |.|.+. ...+-.....|.|+||+|-+|
T Consensus 241 ltvg~i~~~~~~~~~rr~-aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqr~~~~aIVDEvDSIL 305 (1111)
T PRK12901 241 LSVDCIDKHQPNSDARRK-AYEADITYGTNNEFGFDYLRDNMAVSPKDLVQRKHNYAIVDEVDSVL 305 (1111)
T ss_pred CEEEEECCCCCCHHHHHH-HHHCCCEECCCCCCCHHHHHHHCCCCHHHHCCCCCCEEEEECHHHHH
T ss_conf 865232699999799999-87378634156541024356401578787256777658884236666
No 117
>KOG0924 consensus
Probab=99.54 E-value=6.9e-13 Score=105.85 Aligned_cols=301 Identities=20% Similarity=0.361 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999999999759969999289874689999999998610421225568827999849989999999999998544698
Q gi|254780601|r 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103 (573)
Q Consensus 24 t~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~ 103 (573)
..++.+-+..|-+.+=||+.+.||||||.- +-|-|..+. .. ..+ ..-+--|-|--|+-|++-+ +...+.
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edG--Y~-~~G-mIGcTQPRRvAAiSVAkrV---a~EM~~ 426 (1042)
T KOG0924 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDG--YA-DNG-MIGCTQPRRVAAISVAKRV---AEEMGV 426 (1042)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCHHH----HHHHHHHCC--CC-CCC-EEEECCCHHHHHHHHHHHH---HHHHCC
T ss_conf 788999999986385799993588985016----679998622--45-587-1543572278999999999---998587
Q ss_pred EEEEEECCCCHHHHHHHH-CCCCEEEEECCCCHHH-HHHCCCCCCCCCEEEEEECCCC-CCC----CHHHHHHHHHHHHC
Q ss_conf 799998899879999961-2897599822310133-2100012246431899961311-001----00123578887521
Q gi|254780601|r 104 VVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADE-MLD----LGFRDDIEFILDSS 176 (573)
Q Consensus 104 ~v~~~~gg~~~~~q~~~l-~~~~~iiv~TPgrl~d-~~~~~~l~l~~v~~lVlDEaD~-ml~----~gf~~~i~~i~~~~ 176 (573)
.+..-+| -++.-+ .. ....-|=.-|-|-|+. .|..+ .|.+-..+|+|||-+ -|+ ||+..++ ++.
T Consensus 427 ~lG~~VG-YsIRFE--dvT~~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~---lar- 497 (1042)
T KOG0924 427 TLGDTVG-YSIRFE--DVTSEDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKV---LAR- 497 (1042)
T ss_pred CCCCCCC-EEEEEE--ECCCCCEEEEEECCCHHHHHHHHHH--HHHHEEEEEECHHHHCCCCHHHHHHHHHHH---HHH-
T ss_conf 6453112-488852--0478760578742305779776330--044401788511433030058999999999---874-
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH-HHHHHCCCCC---CCCEEEEECC
Q ss_conf 43342256311112220011112101233332333232566520000000000024-5542001023---5641677513
Q gi|254780601|r 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYH---GAKNAIVFCS 252 (573)
Q Consensus 177 p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~-~~l~~ll~~~---~~~~~ivF~~ 252 (573)
..+-..++.||||.. .+++. |+.|.-...+....-.+ +-.|...+-.|-. .++.+.+..+ .+.-.+||.-
T Consensus 498 RrdlKliVtSATm~a--~kf~n-fFgn~p~f~IpGRTyPV---~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924 498 RRDLKLIVTSATMDA--QKFSN-FFGNCPQFTIPGRTYPV---EIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred HCCCEEEEEECCCCH--HHHHH-HHCCCCEEEECCCCCCE---EEEECCCCHHHHHHHHHHHHEEEECCCCCCCEEEECC
T ss_conf 226359976220248--99988-72788601015876423---7775268558899998765458544689887799527
Q ss_pred CHHHHHHHHH----HHHH------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC
Q ss_conf 0233456555----5542------26663010489999999999866544881499853865001457887338970588
Q gi|254780601|r 253 TRASVSRFTK----VLAE------HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322 (573)
Q Consensus 253 t~~~~~~l~~----~L~~------~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P 322 (573)
....++-.+. .|.+ .++.+.++++.|++.-...+++.--.|.-+++|||++|.--|-|++|.+||--.+-
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHCCCCCCCCEEEEEECCCHHHCEEECCEEEEEECCCE
T ss_conf 87632678999999997552388886278840552866666433056888812699862211211332664899725724
Q ss_pred CCHHHHHHHHC----------------CCCCCCC--CCEEEEEECHH
Q ss_conf 74789998603----------------0103788--86025640599
Q gi|254780601|r 323 SNPENLLHRSG----------------RTGRAGR--KGMSVFVIPQN 351 (573)
Q Consensus 323 ~~~~~yvHR~G----------------RtgRag~--~G~ai~l~~~~ 351 (573)
. ...|--|+| |+||||+ .|+|+-+|+..
T Consensus 652 K-~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ 697 (1042)
T KOG0924 652 K-LKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTED 697 (1042)
T ss_pred E-EEECCCCCCCCEEEEEECHHCCCHHHCCCCCCCCCCCEEEEHHHH
T ss_conf 5-641056656422578751221310112445788996265302366
No 118
>KOG4150 consensus
Probab=99.53 E-value=2.6e-13 Score=108.68 Aligned_cols=343 Identities=13% Similarity=0.080 Sum_probs=212.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 89999999787987898999999999759969999289874689999999998610421225568827999849989999
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~ 88 (573)
+.+.+-+.++--+.--.+|..+|..+-+|+++++...|-+||.++|.+..+.-+.... ....+.+.||.||+.
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-------~s~~~~~~~~~~~~~ 345 (1034)
T KOG4150 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-------ATNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-------CCCEECCHHHHHHHH
T ss_conf 9889997066665413526989866640442345320115766464500245653286-------534221424899863
Q ss_pred HHHHHHHH-HHH--HCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCC----CCCCCEEEEEECCCCCC
Q ss_conf 99999999-854--469879999889987999996128975998223101332100012----24643189996131100
Q gi|254780601|r 89 QVGRELEW-LYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL----NISHLKAVVLDEADEML 161 (573)
Q Consensus 89 Qv~~~~~~-l~~--~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l----~l~~v~~lVlDEaD~ml 161 (573)
.-.+.+.- +.. ...--++-.|.|.+-..+..-.+.|..++.+.|.-+..-+--+.+ .+-+.+..+.||.---+
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred CCCCCEEEEEEEHHHHHCCEEECCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEE
T ss_conf 46765499987113321124652367773467788762752352488899988603333433076887774023001230
Q ss_pred CC-H-H-HHHHHHHHHHC-----CCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC-----
Q ss_conf 10-0-1-23578887521-----4334225631111222001111210123333233323256652000000000-----
Q gi|254780601|r 162 DL-G-F-RDDIEFILDSS-----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL----- 228 (573)
Q Consensus 162 ~~-g-f-~~~i~~i~~~~-----p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~----- 228 (573)
-. | . .+.+.+++... +-+-|.+-.|||+...+.-....|--+- +.+......+..-+++++.-++
T Consensus 426 ~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E--~~Li~~DGSPs~~K~~V~WNP~~~P~~ 503 (1034)
T KOG4150 426 FPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSE--LELVTIDGSPSSEKLFVLWNPSAPPTS 503 (1034)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCC--EEEEEECCCCCCCCEEEEECCCCCCCC
T ss_conf 333668999999999998778860584168478876777788998558760--499971599877416999689999830
Q ss_pred -CHHHHH---HHHCC-C-CCCCCEEEEECCCHHHHHHHHHH----HHHCCC----CCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf -002455---42001-0-23564167751302334565555----542266----6301048999999999986654488
Q gi|254780601|r 229 -SDRDNA---IVNIL-R-YHGAKNAIVFCSTRASVSRFTKV----LAEHLF----QVVALSGELSQQERSNALQMMRDGR 294 (573)
Q Consensus 229 -~~k~~~---l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~----L~~~g~----~~~~lhg~~~q~~R~~~~~~fr~g~ 294 (573)
+.|... ..+++ + ....-++|-||-+++-|+-+... |.+.|- .+..+-|+...++|..+...+=.|+
T Consensus 504 ~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150 504 KSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCE
T ss_conf 34432389999999999997187389963289899999999999998744789999986147753556777788851782
Q ss_pred EEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEE--CHHHHHHHHHHH
Q ss_conf 149985386500145788733897058874789998603010378886025640--599999999999
Q gi|254780601|r 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQRRAERLF 360 (573)
Q Consensus 295 ~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~--~~~e~~~~~~i~ 360 (573)
..-+|+|+.+.-||||..+|.|++..+|.+...+-+..||+||-++...++.++ .|-|..++.+=+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~ 651 (1034)
T KOG4150 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPD 651 (1034)
T ss_pred EEEEEECCHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHCCCH
T ss_conf 68998536074442435643689826850677899872110156898448999742761277661918
No 119
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=99.53 E-value=4.7e-13 Score=106.98 Aligned_cols=325 Identities=20% Similarity=0.249 Sum_probs=182.0
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC----CCCCEEEEEC-CCHHHHHH
Q ss_conf 978798789899999999975996-99992898746899999999986104212255----6882799984-99899999
Q gi|254780601|r 16 SERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSP----ASAPLALAIA-PTRELAVQ 89 (573)
Q Consensus 16 ~~~g~~~pt~iQ~~~ip~~l~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~----~~~~~~lil~-PTrELa~Q 89 (573)
...|+.-|.|-|..-..-+++|.= --+.-|||+|||||-++-=+--+..+.++.+. ..-|.=||++ -=|-.+-|
T Consensus 10 ~~~G~~GPfpwQ~~L~~r~~~G~~P~~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~yvVdRR~vVD~ 89 (975)
T TIGR02621 10 ELTGYSGPFPWQLRLAERFVAGEPPESCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVYVVDRRTVVDQ 89 (975)
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCEEECC
T ss_conf 73589888658999999985489887667875323689999999999874000367324213368313788714245343
Q ss_pred HHHHHHHHHHH---------------------------CCCEEEEEECCCCHHH----HHHHHCCCCEEEEECCCCHHHH
Q ss_conf 99999998544---------------------------6987999988998799----9996128975998223101332
Q gi|254780601|r 90 VGRELEWLYAK---------------------------TGVVVAVCIGGVSVHR----ERRDLQNGAHIVVGTPGRLCDH 138 (573)
Q Consensus 90 v~~~~~~l~~~---------------------------~~~~v~~~~gg~~~~~----q~~~l~~~~~iiv~TPgrl~d~ 138 (573)
+.++.+++.+- .-+.|..+-||..... +...==..|-|||||= |+
T Consensus 90 ~te~a~~i~~aL~~~pe~~Av~~vl~slr~~~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPavivgTv----Dm 165 (975)
T TIGR02621 90 STEEAEKIREALGEAPELPAVRYVLESLRSAFAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAVIVGTV----DM 165 (975)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECC----CC
T ss_conf 27899999985468887789999999732367877656652331116755302232334531789966998344----20
Q ss_pred H-----HCCC--------CC---CCCCEEEEEECCCCCCCCHHHHHHHHHHHH--CCCCC-C--EEEEECC----CCCCC
Q ss_conf 1-----0001--------22---464318999613110010012357888752--14334-2--2563111----12220
Q gi|254780601|r 139 I-----RGKG--------LN---ISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKR-R--MLMFSAT----ISPAI 193 (573)
Q Consensus 139 ~-----~~~~--------l~---l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~--~p~~~-q--~~l~SAT----~~~~i 193 (573)
+ -+|. |+ +.+=-++|+|||- |+--|.+-+..|.+. -+++. + .+-..|| .|+..
T Consensus 166 ~gSRLLFrGYg~spk~rpihAal~G~DAl~VlDEAH--l~~~f~e~L~~i~~E~~R~~d~~~~~V~~Ltatp~td~p~~~ 243 (975)
T TIGR02621 166 IGSRLLFRGYGCSPKSRPIHAALLGQDALIVLDEAH--LSPAFQETLKQIRSEQQRLEDFLPLRVVELTATPRTDTPDTL 243 (975)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHH--CCHHHHHHHHHHHHHCCCHHHCCCCEECCEEEECCCCCCCCC
T ss_conf 234354413456766551122213110665433430--587899999998511047012268620313663014788654
Q ss_pred HHHHHHHCCCCC-CCCCCCCC-----------CCCCCCCHHCCCCCCCHHHHHHH-----HCCCCCCCCEEEEECCCHHH
Q ss_conf 011112101233-33233323-----------25665200000000000245542-----00102356416775130233
Q gi|254780601|r 194 TTLAKNYQKDAV-RVNIASEN-----------RQHSDIDYRAVLVALSDRDNAIV-----NILRYHGAKNAIVFCSTRAS 256 (573)
Q Consensus 194 ~~l~~~~~~~p~-~i~~~~~~-----------~~~~~i~~~~~~v~~~~k~~~l~-----~ll~~~~~~~~ivF~~t~~~ 256 (573)
..+...=-++|+ .-.+..++ .....|++.-+.+....-..+|. +.-+.......+|||||-+.
T Consensus 244 ~~l~~~d~~~~~~~~rL~~kk~~~L~p~~de~~~~~~v~~~~~~~~DGkaaaalteqaWsrakels~g~~~~Vf~~~~~~ 323 (975)
T TIGR02621 244 TLLSAEDYKHPVLKKRLDAKKEVKLDPQSDEKRLSEDVKELDLKMKDGKAAAALTEQAWSRAKELSSGEAILVFCNTVDE 323 (975)
T ss_pred CCCCCCCCCCCHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 22355101031332043412021047826899988511355422003056788777776665541278669998768430
Q ss_pred HHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHHHHHHHC-----------CCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 45655555422666301048-------9999999999866544-----------88149985386500145788733897
Q gi|254780601|r 257 VSRFTKVLAEHLFQVVALSG-------ELSQQERSNALQMMRD-----------GRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 257 ~~~l~~~L~~~g~~~~~lhg-------~~~q~~R~~~~~~fr~-----------g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
|..+...|.+.--....|.| ||.. .|..++++|-. ...-+||||.-..=|.||+ -+|.+-
T Consensus 324 v~~v~a~L~k~~~~~~~ltG~vr~~~~d~la-r~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~EVGadld-fdhLvt 401 (975)
T TIGR02621 324 VKKVVAKLPKEARRLEDLTGTVRGLERDMLA-RRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTGEVGADLD-FDHLVT 401 (975)
T ss_pred HHHHHHHCCCCCCCHHHHCCCCCCCCCCCCC-CCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCC-CCHHHH
T ss_conf 6898864577454077628810433478520-01314531487645677366899877999732425503443-111221
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCE-EEEEECH
Q ss_conf 0588747899986030103788860-2564059
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQ 350 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~-ai~l~~~ 350 (573)
=.. .+++.++|-||.-|.|.-+. .|.+|..
T Consensus 402 ~~~--~~~sl~QRfGRvnR~G~r~~~~~~iVh~ 432 (975)
T TIGR02621 402 DLA--PFESLVQRFGRVNRFGERLDGSIAIVHS 432 (975)
T ss_pred CCC--HHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 144--2457865430020002231650589856
No 120
>pfam03880 DbpA DbpA RNA binding domain. This RNA binding domain is found at the C-terminus of a number of DEAD helicase proteins. It is sufficient to confer specificity for hairpin 92 of 23S rRNA, which is part of the ribosomal A-site. However, several members of this family lack specificity for 23S rRNA. These can proteins can generally be distinguished by a basic region that extends beyond this domain [Karl Kossen, unpublished data].
Probab=99.49 E-value=8.6e-14 Score=111.95 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=59.2
Q ss_pred EEEEEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHHHHHCC
Q ss_conf 49999670227986889999775002899888300364188506761899999999985148
Q gi|254780601|r 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528 (573)
Q Consensus 467 ~r~~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~~~~~~ 528 (573)
+||+||+|++||++|++|+++||+++++++.+||+|+|+++|||||||++.++.++++++..
T Consensus 1 ~rl~in~G~~d~~~~~~lv~~l~~~~~i~~~~IG~I~I~~~~Sfv~v~~~~a~~vl~~l~~~ 62 (74)
T pfam03880 1 VRLFINVGRKDGIRPGDIVGAIANEGGITGDDIGKIDIFDNFSFVEVPEDMADKVLKALKKG 62 (74)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHEEEEEEECCEEEEEECHHHHHHHHHHHCCC
T ss_conf 99999765313997899999997522999767606999656589996756199999983789
No 121
>KOG0923 consensus
Probab=99.49 E-value=3.6e-12 Score=101.04 Aligned_cols=292 Identities=20% Similarity=0.275 Sum_probs=170.9
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH----H-HHHHHHCCCEEEE
Q ss_conf 9975996999928987468999999999861042122556882799984998999999999----9-9985446987999
Q gi|254780601|r 33 PDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE----L-EWLYAKTGVVVAV 107 (573)
Q Consensus 33 ~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~----~-~~l~~~~~~~v~~ 107 (573)
.+-+.+=+|+.+.||||||. -||-. |.... -...+-..=+--|-|--|+-|+.- + .+|++..|-.|
T Consensus 276 av~e~QVLiI~GeTGSGKTT--QiPQy--L~EaG---ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsI-- 346 (902)
T KOG0923 276 AVKEHQVLIIVGETGSGKTT--QIPQY--LYEAG---YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSI-- 346 (902)
T ss_pred HHHHCCEEEEECCCCCCCCC--CCCHH--HHHCC---CCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE--
T ss_conf 99867089997578898644--56289--88542---13589467406850688777999999985740143144488--
Q ss_pred EECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-CCCH-HHHHHHHHHHHCCCCCCEEEE
Q ss_conf 98899879999961289759982231013321000122464318999613110-0100-123578887521433422563
Q gi|254780601|r 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-LDLG-FRDDIEFILDSSPKKRRMLMF 185 (573)
Q Consensus 108 ~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l~~g-f~~~i~~i~~~~p~~~q~~l~ 185 (573)
.-+- .-....-|=+-|-|-|+--+- .--+|+.-..+++|||-+- |.-- .+.-|+.|...-|.- ..++.
T Consensus 347 -------RFEd-cTSekTvlKYMTDGmLlREfL-~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL-KllIs 416 (902)
T KOG0923 347 -------RFED-CTSEKTVLKYMTDGMLLREFL-SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL-KLLIS 416 (902)
T ss_pred -------EECC-CCCCCEEEEEECCHHHHHHHH-CCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEE
T ss_conf -------8503-567412243224306799871-4634223359996024320034567999878887508760-47732
Q ss_pred ECCCCCCCHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHCCCCCCCHHHH-HHHHCCCCC---CCCEEEEECCCHHHHHHH
Q ss_conf 111122200111121012-333323332325665200000000000245-542001023---564167751302334565
Q gi|254780601|r 186 SATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYH---GAKNAIVFCSTRASVSRF 260 (573)
Q Consensus 186 SAT~~~~i~~l~~~~~~~-p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~-~l~~ll~~~---~~~~~ivF~~t~~~~~~l 260 (573)
||||..+ ++.. |+.+ |++. +....-. +.-+|-..++.|-++ ++..++..+ ...-.|||.--....+..
T Consensus 417 SAT~DAe--kFS~-fFDdapIF~-iPGRRyP---Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923 417 SATMDAE--KFSA-FFDDAPIFR-IPGRRYP---VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred CCCCCHH--HHHH-HCCCCCEEE-CCCCCCC---EEEECCCCCCHHHHHHHHHHHEEEEECCCCCCEEEEECCHHHHHHH
T ss_conf 2226789--9987-616885772-3686565---1343045885307999886540467515776579994467899999
Q ss_pred HHHHHH-------CC--CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC----------
Q ss_conf 555542-------26--66301048999999999986654488149985386500145788733897058----------
Q gi|254780601|r 261 TKVLAE-------HL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL---------- 321 (573)
Q Consensus 261 ~~~L~~-------~g--~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~---------- 321 (573)
.+.|.. ++ +-+.++|+.+++.....+++---.|.-+|++||++|.--|-|++|.+||-=.+
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEEEEECCHHHCEEECCEEEEECCCCCCCCCCCCCC
T ss_conf 99999999985336550798400046986888763588998850489861101210544675899667621124768776
Q ss_pred --------CCCHHHHHHHHCCCCCCCCCCEEEEEECHH
Q ss_conf --------874789998603010378886025640599
Q gi|254780601|r 322 --------SSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 (573)
Q Consensus 322 --------P~~~~~yvHR~GRtgRag~~G~ai~l~~~~ 351 (573)
|-+..+-.+|+||+||-| .|+|+-||+..
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923 570 GMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCEEEEEEEECHHHHHHHCCCCCCCC-CCCEEEEECHH
T ss_conf 85067776311000444423457889-97257850066
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.49 E-value=8.3e-12 Score=98.57 Aligned_cols=299 Identities=18% Similarity=0.225 Sum_probs=178.6
Q ss_pred CCCCCHHHHHHHHHHH----CCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 9878989999999997----5996-9999289874689999999998610421225568827999849989999999999
Q gi|254780601|r 20 YVNLTSVQEAILNPDL----REKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l----~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~ 94 (573)
=..|-.-|..||-.+. +|++ ++++.-||||||-. ++.++.+|...... -++|.|+-++-|..|.+..+
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~------KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWV------KRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEE-HHHHHHHHHHCCHH------HEEEEEECHHHHHHHHHHHH
T ss_conf 336227889999999999866874489997058885231-99999999961414------30567612678999999999
Q ss_pred HHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCC-----CCCCCCCEEEEEECCCCCCC------
Q ss_conf 9985446-98799998899879999961289759982231013321000-----12246431899961311001------
Q gi|254780601|r 95 EWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK-----GLNISHLKAVVLDEADEMLD------ 162 (573)
Q Consensus 95 ~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~-----~l~l~~v~~lVlDEaD~ml~------ 162 (573)
..+..+. ..+...-+.+ ..-+.|.|+|-..+..-++.. .+..+.-..+|+|||-+=.-
T Consensus 236 ~~~~P~~~~~n~i~~~~~----------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I 305 (875)
T COG4096 236 EDFLPFGTKMNKIEDKKG----------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSI 305 (875)
T ss_pred HHHCCCCCCEEEECCCCC----------CCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 963988640123201467----------8630588760377875640654565567888312899606666678766789
Q ss_pred CHHHHHHHHHHHHCCCC----CCEEEEECCCCCCC----HHHHHHHCCCCCCCCCCCC---------------CCCCCCC
Q ss_conf 00123578887521433----42256311112220----0111121012333323332---------------3256652
Q gi|254780601|r 163 LGFRDDIEFILDSSPKK----RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASE---------------NRQHSDI 219 (573)
Q Consensus 163 ~gf~~~i~~i~~~~p~~----~q~~l~SAT~~~~i----~~l~~~~~~~p~~i~~~~~---------------~~~~~~i 219 (573)
+-|.+....++..+|++ ..+-+|- -.|-.. ..+..-||-.|..|.+... ..+-..|
T Consensus 306 ~dYFdA~~~gLTATP~~~~d~~T~~~F~-g~Pt~~YsleeAV~DG~Lvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 306 LDYFDAATQGLTATPKETIDRSTYGFFN-GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCEEECHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
T ss_conf 8899998876125762111323101337-970224128888521545788633766431566747675523233313436
Q ss_pred --CHHCCCCCCCHHH-------HH----HHHCCCC--C--CCCEEEEECCCHHHHHHHHHHHHHC-----CCCCCCCCCC
Q ss_conf --0000000000024-------55----4200102--3--5641677513023345655555422-----6663010489
Q gi|254780601|r 220 --DYRAVLVALSDRD-------NA----IVNILRY--H--GAKNAIVFCSTRASVSRFTKVLAEH-----LFQVVALSGE 277 (573)
Q Consensus 220 --~~~~~~v~~~~k~-------~~----l~~ll~~--~--~~~~~ivF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~ 277 (573)
.-+++....-++. +. +...|+. . ...++||||.+...++.+...|.+. |--|..+.|+
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CCCCCCCCCCCCCHHEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 86544633355320000312478999999998425668886684589962707899999999874801067459998444
Q ss_pred CCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC
Q ss_conf 999999999866544--8814998538650014578873389705887478999860301037
Q gi|254780601|r 278 LSQQERSNALQMMRD--GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~--g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa 338 (573)
-.+.+- -++.|.. .--+|-|+.|++.-|+|+|.|-.++-+-.=.+..-|-+=+||--|.
T Consensus 465 ~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~V~SktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CHHHHH--HHHHHHHCCCCCCEEEEHHHHHCCCCCHHEEEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf 065689--9998874378983587612454278762204564314446689999986676543
No 123
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=4.4e-10 Score=87.02 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=62.8
Q ss_pred HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCC
Q ss_conf 420010235641677513023345655555422666-3010489999999999866544881-49985386500145788
Q gi|254780601|r 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRA-RVCIATDVAARGIDLPD 312 (573)
Q Consensus 235 l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~q~~R~~~~~~fr~g~~-~vLV~TDvaaRGiDi~~ 312 (573)
+..++.. .+..++||+.+....+.+++.|...... ....+|+ ..+...+++|+.+.- -+||+|.-.+.|+|+++
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCC---CCHHHHHHHHHHCCCCEEEEEECCEECCEECCC
T ss_conf 9999974-799889991789999999998651164533445687---846999999971478649997233103151688
Q ss_pred --CCEEEEECCCC
Q ss_conf --73389705887
Q gi|254780601|r 313 --LELVIHAELSS 323 (573)
Q Consensus 313 --v~~Vin~d~P~ 323 (573)
...||-..+|.
T Consensus 547 ~~l~~vvI~~lPf 559 (654)
T COG1199 547 DALRLVVIVGLPF 559 (654)
T ss_pred CCEEEEEEEECCC
T ss_conf 7657999982689
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=99.45 E-value=1e-10 Score=91.24 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHCCCC-----------CCCHHHHHHHH----HHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9988999999978798-----------78989999999----9975--99699992898746899999999986104212
Q gi|254780601|r 6 NIPQVIGEALSERGYV-----------NLTSVQEAILN----PDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~-----------~pt~iQ~~~ip----~~l~--g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~ 68 (573)
.|+..-.+++..+|++ .--+=|..-.. .+.+ ..++++.|+||+|||+|||||++..-...
T Consensus 233 ~l~~~fsk~~~~l~l~GGslskaf~~y~~R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~~--- 309 (944)
T TIGR01407 233 TLTSTFSKNIDRLGLEGGSLSKAFLRYEYREEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKEE--- 309 (944)
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCC---
T ss_conf 00146777887631676237888776531388999999999984157661133023766432589999999731378---
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCCCH
Q ss_conf 255688279998499899999999-9999854469--879999889987
Q gi|254780601|r 69 FSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTG--VVVAVCIGGVSV 114 (573)
Q Consensus 69 ~~~~~~~~~lil~PTrELa~Qv~~-~~~~l~~~~~--~~v~~~~gg~~~ 114 (573)
.-+++|=++|.=|=.|+-+ ++..+.+-.+ ++++.+.|-.+|
T Consensus 310 -----~~~vviST~Tk~LQ~QL~E~d~P~l~~~~~fk~~~~~iKg~~~Y 353 (944)
T TIGR01407 310 -----EKPVVISTATKVLQSQLLEKDIPLLNKILNFKLNVALIKGKKNY 353 (944)
T ss_pred -----CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf -----88569983636656565688889888651897127885076554
No 125
>KOG0953 consensus
Probab=99.42 E-value=1.9e-11 Score=96.14 Aligned_cols=292 Identities=20% Similarity=0.257 Sum_probs=178.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 99992898746899999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~ 119 (573)
+.-..||-||||. -.|+++.... .++.--|-|-||.-|++-+... |+.+-.+.|- .. ..
T Consensus 194 i~H~GPTNSGKTy----~ALqrl~~ak---------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGe-E~---~~ 252 (700)
T KOG0953 194 IMHVGPTNSGKTY----RALQRLKSAK---------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGE-ER---RF 252 (700)
T ss_pred EEEECCCCCCHHH----HHHHHHHHHC---------CCEECCHHHHHHHHHHHHHHHC----CCCCCCCCCC-EE---EE
T ss_conf 9875788884257----9999875402---------6600260898999999876432----8873344461-25---40
Q ss_pred HHC--CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 612--89759982231013321000122464318999613110010--01235788875214334225631111222001
Q gi|254780601|r 120 DLQ--NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--GFRDDIEFILDSSPKKRRMLMFSATISPAITT 195 (573)
Q Consensus 120 ~l~--~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~--gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~ 195 (573)
.+. +.++.+-||- +|.. + -......||||...|-|- || .....+|....++-. ||. .+.+.+
T Consensus 253 ~~~~~~~a~hvScTV----EM~s---v-~~~yeVAViDEIQmm~Dp~RGw-AWTrALLGl~AdEiH--LCG---epsvld 318 (700)
T KOG0953 253 VLDNGNPAQHVSCTV----EMVS---V-NTPYEVAVIDEIQMMRDPSRGW-AWTRALLGLAADEIH--LCG---EPSVLD 318 (700)
T ss_pred CCCCCCCCCCEEEEE----EEEE---C-CCCEEEEEEHHHHHHCCCCCCH-HHHHHHHHHHHHHHH--CCC---CCHHHH
T ss_conf 578888665147899----9840---6-8705788766677622765235-999998744055610--058---804899
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHCCC-CCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 111210123333233323256652000000-000002455420010235641677513023345655555422666-301
Q gi|254780601|r 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVA 273 (573)
Q Consensus 196 l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~-v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~-~~~ 273 (573)
|+++.++. |.+.++-+.|. ..+-.-.+.+..-+....+.-||| |=+|++.-.+...+..+|-. ++.
T Consensus 319 lV~~i~k~-----------TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953 319 LVRKILKM-----------TGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHHHHHHH-----------CCCEEEEEEECCCCCCEEHHHHHHHHCCCCCCCEEE-EEEHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999863-----------178148976000576500042320230688887699-941114888899999855855489
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEEECCCC---------CHHHHHHHHCCCCCCCC--
Q ss_conf 0489999999999866544--8814998538650014578873389705887---------47899986030103788--
Q gi|254780601|r 274 LSGELSQQERSNALQMMRD--GRARVCIATDVAARGIDLPDLELVIHAELSS---------NPENLLHRSGRTGRAGR-- 340 (573)
Q Consensus 274 lhg~~~q~~R~~~~~~fr~--g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~---------~~~~yvHR~GRtgRag~-- 340 (573)
++|+++.+.|.+--..|.+ +..+||||||....||++. |+-||-|++-. ....-.+=+||+||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC-EEEEEEEECCCCCCCCCEECCHHHHHHHHHCCCCCCCCC
T ss_conf 9558997306888987379887625688623214554443-117987503567766210256899998851015445677
Q ss_pred -CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHH
Q ss_conf -86025640599999999999985066410568-99999888
Q gi|254780601|r 341 -KGMSVFVIPQNMQRRAERLFREANVSVVWEPA-PSVEAIRE 380 (573)
Q Consensus 341 -~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~-Ps~eeI~~ 380 (573)
.|.+.+| ..++...++.+.+..-..+....+ |+.|++..
T Consensus 466 ~~G~vTtl-~~eDL~~L~~~l~~p~epi~~agl~pt~eqie~ 506 (700)
T KOG0953 466 PQGEVTTL-HSEDLKLLKRILKRPVEPIKNAGLWPTDEQIEL 506 (700)
T ss_pred CCCEEEEE-EHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHH
T ss_conf 67457774-186699999998479567776357863999999
No 126
>KOG0385 consensus
Probab=99.41 E-value=3.9e-10 Score=87.34 Aligned_cols=314 Identities=21% Similarity=0.259 Sum_probs=188.7
Q ss_pred CCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 78989999999997----59969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 22 NLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
.+.+-|-+-+-.++ +|-+.|..-+-|-|||+- .|.+|-.|..-.. ..+|. ||+||---|..=. +++.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~----~~GPf-LVi~P~StL~NW~-~Ef~rf 239 (971)
T KOG0385 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG----IPGPF-LVIAPKSTLDNWM-NEFKRF 239 (971)
T ss_pred CCCHHHHCCHHHHHHHHHCCCCCEEEHHCCCCHHHH-HHHHHHHHHHHCC----CCCCE-EEEEEHHHHHHHH-HHHHHH
T ss_conf 554332033799999986576658423104533899-9999999998517----99984-9981276678999-999976
Q ss_pred HHHCCCEEEEEECCCCHHHHH-HH-H-CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC-----------
Q ss_conf 544698799998899879999-96-1-289759982231013321000122464318999613110010-----------
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRER-RD-L-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL----------- 163 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~-~~-l-~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~----------- 163 (573)
+ .++++.+.+|...-.... +. + ..+-||+|+|=.-.+ -.+..|.--+-+|+|+|||-++=++
T Consensus 240 ~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i--~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f 315 (971)
T KOG0385 240 T--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAI--KDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF 315 (971)
T ss_pred C--CCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEHHHHHH--HHHHHHHCCCCEEEEECHHHHHCCHHHHHHHHHHHH
T ss_conf 8--986349884799999999998531578766864078898--668898619934999523654146244899999985
Q ss_pred ------------------------HHH-HH-------HH-------------------HH-------------HHHCCCC
Q ss_conf ------------------------012-35-------78-------------------88-------------7521433
Q gi|254780601|r 164 ------------------------GFR-DD-------IE-------------------FI-------------LDSSPKK 179 (573)
Q Consensus 164 ------------------------gf~-~~-------i~-------------------~i-------------~~~~p~~ 179 (573)
+|. +| .+ .| .+.+|..
T Consensus 316 ~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385 316 KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 66552675278543649999999976221420578899999711343355899999998663899999888787418975
Q ss_pred CCEEEEECCCCCCCHHHHHHH-----CCCCCCCC-CC--------------CCCCCCCCCCHHC----------CCCCCC
Q ss_conf 422563111122200111121-----01233332-33--------------3232566520000----------000000
Q gi|254780601|r 180 RRMLMFSATISPAITTLAKNY-----QKDAVRVN-IA--------------SENRQHSDIDYRA----------VLVALS 229 (573)
Q Consensus 180 ~q~~l~SAT~~~~i~~l~~~~-----~~~p~~i~-~~--------------~~~~~~~~i~~~~----------~~v~~~ 229 (573)
+-+.++. +|+ .+-++| +++-..+. .. ++...||.+-+.+ ..|..+
T Consensus 396 kE~~iyv-gms----~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nS 470 (971)
T KOG0385 396 KELIIYV-GMS----SMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNS 470 (971)
T ss_pred CEEEEEE-CCH----HHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 3267860-650----88999999999611375426663203789999999997469964148888899988621787547
Q ss_pred HHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC---CEEEEEECCCC
Q ss_conf 02455420010--23564167751302334565555542266630104899999999998665448---81499853865
Q gi|254780601|r 230 DRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG---RARVCIATDVA 304 (573)
Q Consensus 230 ~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g---~~~vLV~TDva 304 (573)
-|+.+|-+||. .....+++||-.--...+-|.++..-+||...-|.|.++.++|..+++.|... ..=+|++|-..
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred CCEEHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 61116998889998489769982698889999999987517526872388870789999986389976258999850466
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCE--EEEEECHH
Q ss_conf 001457887338970588747899986030103788860--25640599
Q gi|254780601|r 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQN 351 (573)
Q Consensus 305 aRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~--ai~l~~~~ 351 (573)
.-||++..-|.||-||--.++..=++-.-|+-|-|++-. ++-|++.+
T Consensus 551 GLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385 551 GLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 6630222364799966899821437889988860787715999975355
No 127
>KOG0949 consensus
Probab=99.41 E-value=5.2e-11 Score=93.25 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH-HHC
Q ss_conf 8989999999997599699992898746899999999986104212255688279998499899999999999985-446
Q gi|254780601|r 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKT 101 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~-~~~ 101 (573)
|-.-|...+-..-.+..+++.|||-+|||.+ .-=.+++.+.+... --+|..+||..|..|++..+..-. ...
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~------~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDS------DVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCEEC-CHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 8388887766550566259982046786100-58999999854279------8799966458776666677887633676
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC---CCCCCCCCEEEEEECCCCCCCCHHHHH--HHHHHHHC
Q ss_conf 9879999889987999996128975998223101332100---012246431899961311001001235--78887521
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDD--IEFILDSS 176 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~---~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~i~~~~ 176 (573)
-.+..++.|...-+-++.. -.|+|+|.-|..+-.++.. ..-..++++++|.||.-..=+ +.++ .+.++-..
T Consensus 585 ~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~--~ed~l~~Eqll~li 660 (1330)
T KOG0949 585 FLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN--EEDGLLWEQLLLLI 660 (1330)
T ss_pred CCCCHHHHHHHHHHHCCCC--HHCEEEEECHHHHHHHHCCCHHHHHHHHCCEEEEECHHHHCCC--CCCCHHHHHHHHHC
T ss_conf 5631346766667735784--1135999746789988638566530224005897112332465--24341899877745
Q ss_pred CCCCCEEEEECCCCC
Q ss_conf 433422563111122
Q gi|254780601|r 177 PKKRRMLMFSATISP 191 (573)
Q Consensus 177 p~~~q~~l~SAT~~~ 191 (573)
.+-++..|||+.+
T Consensus 661 --~CP~L~LSATigN 673 (1330)
T KOG0949 661 --PCPFLVLSATIGN 673 (1330)
T ss_pred --CCCEEEEECCCCC
T ss_conf --7870687413388
No 128
>KOG0951 consensus
Probab=99.37 E-value=8.6e-11 Score=91.77 Aligned_cols=318 Identities=22% Similarity=0.286 Sum_probs=185.1
Q ss_pred CCCCCHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH-HHHH
Q ss_conf 9878989999999997599-6999928987468999999999861042122556882799984998999999999-9998
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWL 97 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~-~~~l 97 (573)
|..-.|||.++.+.+.+-+ ++++.|++|||||++--+.++. + ...-.++.++|..|.+.-.+.. -+++
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~-------~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P-------DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred CCCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC---C-------CCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 014687138997313315661899457887344889998628---8-------663279984366899999999998753
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH-------HH
Q ss_conf 54469879999889987999996128975998223101332100012246431899961311001001235-------78
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-------IE 170 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~-------i~ 170 (573)
++..|+.++-+.|..+++.. |.+..||+|+||.+. |++. +..++.+++.||+.. +. |+... +.
T Consensus 1211 ~~~~G~~~~~l~ge~s~dlk---l~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~-ig-g~~g~v~evi~S~r 1280 (1674)
T KOG0951 1211 SKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHL-IG-GVYGAVYEVICSMR 1280 (1674)
T ss_pred CCCCCCEEEECCCCCCCCHH---HHHHCCEEEECHHHH-HHHH----HHHHCCEEEEEHHHH-HC-CCCCCEEEEEEEHH
T ss_conf 10458068851786552567---764245588663577-7775----543211686102344-14-65773489874479
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC--------CCHHCCCCCCC--HHHHHHHHCCC
Q ss_conf 887521433422563111122200111121012333323332325665--------20000000000--02455420010
Q gi|254780601|r 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--------IDYRAVLVALS--DRDNAIVNILR 240 (573)
Q Consensus 171 ~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~--------i~~~~~~v~~~--~k~~~l~~ll~ 240 (573)
.|-..+-+.-+.+..|..+... .+++. +...-.+...+....+|. +.++--..-.. --+.++++.
T Consensus 1281 ~ia~q~~k~ir~v~ls~~lana-~d~ig--~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~s~~~am~~~~~~ai~~~-- 1355 (1674)
T KOG0951 1281 YIASQLEKKIRVVALSSSLANA-RDLIG--ASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH-- 1355 (1674)
T ss_pred HHHHHHHHHEEEEEEEHHHCCC-HHHCC--CCCCCEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH--
T ss_conf 9999998650588732223041-22205--354553605866688760688887324015788877431279999998--
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCC----------------------CCCCCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 23564167751302334565555542266----------------------63010489999999999866544881499
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLF----------------------QVVALSGELSQQERSNALQMMRDGRARVC 298 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~----------------------~~~~lhg~~~q~~R~~~~~~fr~g~~~vL 298 (573)
..+.+.+|||+.+++.|..++..|....+ +...=|-+|+-....-+-.-|..|.+.|+
T Consensus 1356 a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~hgvg~eg~s~~d~~iv~~l~e~g~i~v~ 1435 (1674)
T KOG0951 1356 AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVC 1435 (1674)
T ss_pred HCCCCCEEEEECCCHHHHHHHHCCCHHHCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 54899727980340143222212001221573888778774345766310134445444573518999999746957999
Q ss_pred EECCCCCCCCCCCCCCEEEE-----EC------CCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCC
Q ss_conf 85386500145788733897-----05------88747899986030103788860256405999999999999850664
Q gi|254780601|r 299 IATDVAARGIDLPDLELVIH-----AE------LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367 (573)
Q Consensus 299 V~TDvaaRGiDi~~v~~Vin-----~d------~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~ 367 (573)
|..-- --|+-.. -+.||- || .+......+|=.|++.| -|.||.+.....+...+..
T Consensus 1436 v~s~~-c~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf-------- 1502 (1674)
T KOG0951 1436 VMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF-------- 1502 (1674)
T ss_pred EEECC-CCCCCCC-CEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHCC---CCCEEEEECCCHHHHHHHH--------
T ss_conf 99721-0255321-328998441464265443346866679988414227---8648999448669999985--------
Q ss_pred CCCCCCCH
Q ss_conf 10568999
Q gi|254780601|r 368 VWEPAPSV 375 (573)
Q Consensus 368 ~~~~~Ps~ 375 (573)
-..++|..
T Consensus 1503 l~e~lPve 1510 (1674)
T KOG0951 1503 LYEPLPVE 1510 (1674)
T ss_pred CCCCCCHH
T ss_conf 66767628
No 129
>KOG0926 consensus
Probab=99.37 E-value=4.3e-11 Score=93.78 Aligned_cols=312 Identities=20% Similarity=0.279 Sum_probs=158.7
Q ss_pred CCCCCHHHHHHH--HHH---------HCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC-EEEEECCCHHH
Q ss_conf 987898999999--999---------75996-999928987468999999999861042122556882-79998499899
Q gi|254780601|r 20 YVNLTSVQEAIL--NPD---------LREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP-LALAIAPTREL 86 (573)
Q Consensus 20 ~~~pt~iQ~~~i--p~~---------l~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~-~~lil~PTrEL 86 (573)
...|+.||..-+ |.. ++.++ ||++.+||||||. -+|-+ |....-.......| ..=|--|-|--
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTT--QvPQF--LYEAGf~s~~~~~~gmIGITqPRRVA 317 (1172)
T KOG0926 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTT--QVPQF--LYEAGFASEQSSSPGMIGITQPRRVA 317 (1172)
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCHHH--HHHCCCCCCCCCCCCEEEECCCHHHH
T ss_conf 448578888775176367899999986228749995488888644--34189--98713477667998705405722789
Q ss_pred HHHHHH----HHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-C
Q ss_conf 999999----99998544698799998899879999961289759982231013321000122464318999613110-0
Q gi|254780601|r 87 AVQVGR----ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-L 161 (573)
Q Consensus 87 a~Qv~~----~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l 161 (573)
|+-+++ ++..++...+..| -|.| .+.....|..-|-|-|+.-|+.. +.|..-..+|||||.+- +
T Consensus 318 aiamAkRVa~EL~~~~~eVsYqI--Rfd~--------ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSv 386 (1172)
T KOG0926 318 AIAMAKRVAFELGVLGSEVSYQI--RFDG--------TIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSV 386 (1172)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEE--EECC--------CCCCCCEEEEECCHHHHHHHHHH-HHHHHCEEEEECHHHHCCC
T ss_conf 99999999998525764114899--8536--------56887404774023889998876-7554201578512543031
Q ss_pred CC-HHHHHHHHHHH---HCCC------CCCEEEEECCCCCCCHHHH--HHHCC-CCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 10-01235788875---2143------3422563111122200111--12101-23333233323256652000000000
Q gi|254780601|r 162 DL-GFRDDIEFILD---SSPK------KRRMLMFSATISPAITTLA--KNYQK-DAVRVNIASENRQHSDIDYRAVLVAL 228 (573)
Q Consensus 162 ~~-gf~~~i~~i~~---~~p~------~~q~~l~SAT~~~~i~~l~--~~~~~-~p~~i~~~~~~~~~~~i~~~~~~v~~ 228 (573)
+- =.+.-+-+|.. .+.+ .-..+++|||+- +.+++ ++.+. -|-.|.+...+-.+ .| |+--..+.
T Consensus 387 nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPV-sI-HF~krT~~ 462 (1172)
T KOG0926 387 NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPV-SI-HFNKRTPD 462 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE--ECCCCCCCEECCCCCCEEEEECCCCCE-EE-EECCCCCC
T ss_conf 278999999887788899766413567616999741477--110246754247899605530452856-88-73267984
Q ss_pred C---HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC---CCC--------------------------------
Q ss_conf 0---02455420010235641677513023345655555422---666--------------------------------
Q gi|254780601|r 229 S---DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH---LFQ-------------------------------- 270 (573)
Q Consensus 229 ~---~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~---g~~-------------------------------- 270 (573)
. +-+.-.++|-+...+...+||+-....++.|+..|.+. .|.
T Consensus 463 DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~ 542 (1172)
T KOG0926 463 DYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEE 542 (1172)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCHH
T ss_conf 17899999999886108998279998075899999999986484102661254531103100133345425854344101
Q ss_pred ----------------------------------------------------------------CCCCCCCCCHHHHHHH
Q ss_conf ----------------------------------------------------------------3010489999999999
Q gi|254780601|r 271 ----------------------------------------------------------------VVALSGELSQQERSNA 286 (573)
Q Consensus 271 ----------------------------------------------------------------~~~lhg~~~q~~R~~~ 286 (573)
|.+|++-++-....++
T Consensus 543 Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RV 622 (1172)
T KOG0926 543 EDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRV 622 (1172)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCCCEEEEEHHHHCCHHHHHHH
T ss_conf 03110112320111025421112332104564555568765560231203330468888886288645653487876321
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCEEE--------EECCCCCHHHH----------HHHHCCCCCCCCCCEEEEEE
Q ss_conf 8665448814998538650014578873389--------70588747899----------98603010378886025640
Q gi|254780601|r 287 LQMMRDGRARVCIATDVAARGIDLPDLELVI--------HAELSSNPENL----------LHRSGRTGRAGRKGMSVFVI 348 (573)
Q Consensus 287 ~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi--------n~d~P~~~~~y----------vHR~GRtgRag~~G~ai~l~ 348 (573)
++.--.|.-=++|+|+||.--|-||+|.+|| +||--..+.+| =+|+||+||-| .|.|+-||
T Consensus 623 F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLY 701 (1172)
T KOG0926 623 FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLY 701 (1172)
T ss_pred CCCCCCCCEEEEEECCCHHCCCCCCCEEEEEECCCHHHHCCCCCCCCEEEEEEEEECCCCCHHCCCCCCCC-CCCEEEHH
T ss_conf 15798873689996130010300587269974650443303444671268987640256211134457888-87111013
Q ss_pred CHH
Q ss_conf 599
Q gi|254780601|r 349 PQN 351 (573)
Q Consensus 349 ~~~ 351 (573)
+.-
T Consensus 702 SSA 704 (1172)
T KOG0926 702 SSA 704 (1172)
T ss_pred HHH
T ss_conf 467
No 130
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=99.36 E-value=2e-10 Score=89.33 Aligned_cols=290 Identities=22% Similarity=0.281 Sum_probs=155.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCHHH---H
Q ss_conf 9928987468999999999861042122556882799984998999999999999854469879999889-98799---9
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHR---E 117 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg-~~~~~---q 117 (573)
...-||||||-.|+-.+-+.+. .+-++|+|+|--.|.-|+.+.++.- .+-.+..+..| .+-.. .
T Consensus 2 l~G~tGsGkte~y~~~~~~~l~---------~g~~~~~l~Pei~l~~q~~~~~~~~---fg~~~~~~h~~~l~~~~~~~~ 69 (524)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLA---------LGKSALVLVPEIALTPQTLQRFKGR---FGSQVAVLHSGKLSDSEKLDA 69 (524)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHH---HCCCHHHHCCCCCCCHHHHHH
T ss_conf 5456788616888999999973---------3771789704211016789999997---187201010013673456889
Q ss_pred HHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-C---CC-H-H-HHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 9961289-759982231013321000122464318999613110-0---10-0-1-235788875214334225631111
Q gi|254780601|r 118 RRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-L---DL-G-F-RDDIEFILDSSPKKRRMLMFSATI 189 (573)
Q Consensus 118 ~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l---~~-g-f-~~~i~~i~~~~p~~~q~~l~SAT~ 189 (573)
++.+..| ..|||||-.-+. +-+.++..+|+||-..- . ++ - | ..|+.. ...-......+|-|||-
T Consensus 70 w~~~~~g~~~~v~G~rsa~f-------~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~-~~~~~~~~p~~lgsatP 141 (524)
T TIGR00595 70 WRKVKLGEALVVIGTRSALF-------LPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAV-YRAKLFNCPVVLGSATP 141 (524)
T ss_pred HHHHHCCCCEEEECCCHHHH-------CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCCEEECCCCC
T ss_conf 99985186005640303432-------46211454787346452100136885520678898-87640488578805672
Q ss_pred CCCCHH---------------HHHHHCC-CCCCCCCCCCCCCC-----CCC---------------CHHC----------
Q ss_conf 222001---------------1112101-23333233323256-----652---------------0000----------
Q gi|254780601|r 190 SPAITT---------------LAKNYQK-DAVRVNIASENRQH-----SDI---------------DYRA---------- 223 (573)
Q Consensus 190 ~~~i~~---------------l~~~~~~-~p~~i~~~~~~~~~-----~~i---------------~~~~---------- 223 (573)
+-+-.. +.+++-. .|..+.+..-.... ..+ +|..
T Consensus 142 ~le~~~~~~~~~~~p~~~~~~l~~r~~~~~~p~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~f~n~rg~~~ 221 (524)
T TIGR00595 142 SLESYHNAKRGKYRPQRHLLVLPRRVGGRKPPEVKLIDLRKEPRQGNRSFLSPELLTALEETLAAGEQAILFLNRRGYSP 221 (524)
T ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 27899998716656203211101320577575156762210002132102258999999988741670689861556653
Q ss_pred ----------CCCCCCH------H--H----HHHHHCCCCCCC---------CEE-EEECCCHHHHHHHHHHHHHC--CC
Q ss_conf ----------0000000------2--4----554200102356---------416-77513023345655555422--66
Q gi|254780601|r 224 ----------VLVALSD------R--D----NAIVNILRYHGA---------KNA-IVFCSTRASVSRFTKVLAEH--LF 269 (573)
Q Consensus 224 ----------~~v~~~~------k--~----~~l~~ll~~~~~---------~~~-ivF~~t~~~~~~l~~~L~~~--g~ 269 (573)
..|+.-+ + - ..+++......+ ... +.|+. ..++.+.+.|... +.
T Consensus 222 ~~~c~~cg~~~~cp~c~~~~~~h~~~~~g~p~l~ch~c~~~~~~p~~cp~c~~~~~~~~~g--~G~~~~~~~l~~~~p~~ 299 (524)
T TIGR00595 222 NLLCRSCGYVLECPNCDVSLTYHKKEGNGQPKLRCHYCGYQEPVPKTCPACGSEDTLKYKG--LGTEKVEEELAKLFPGA 299 (524)
T ss_pred CEEECCCCCCEECCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CCHHHHHHHHHHHCCCC
T ss_conf 0000026750105665302355321368862012210576677754364446643012035--42789999999855887
Q ss_pred CCCCCCCCCCH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC------------CHHHHHHHHCCC
Q ss_conf 63010489999--9999998665448814998538650014578873389705887------------478999860301
Q gi|254780601|r 270 QVVALSGELSQ--QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS------------NPENLLHRSGRT 335 (573)
Q Consensus 270 ~~~~lhg~~~q--~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~------------~~~~yvHR~GRt 335 (573)
+...+..|... ..-...+++|.+|++++|+.|.+.|.|.|+|+|++|.-.+.-. ....+.+=+||.
T Consensus 300 ~~~~~d~d~~~~~~~~~~~~~~f~~g~~d~l~Gtq~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~ 379 (524)
T TIGR00595 300 RIARLDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRA 379 (524)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 36764122123514689999997507840675003443157744203677873120025542134677888888764100
Q ss_pred CCCCCCCEEEEE-ECHHHH
Q ss_conf 037888602564-059999
Q gi|254780601|r 336 GRAGRKGMSVFV-IPQNMQ 353 (573)
Q Consensus 336 gRag~~G~ai~l-~~~~e~ 353 (573)
||+...|..+.- ++|...
T Consensus 380 gr~~~~g~v~iqt~~P~~~ 398 (524)
T TIGR00595 380 GRAEDPGEVIIQTYNPGHP 398 (524)
T ss_pred CCCCCCCEEEEEEECCCHH
T ss_conf 2346887479973077516
No 131
>KOG0925 consensus
Probab=99.35 E-value=4.9e-10 Score=86.66 Aligned_cols=313 Identities=20% Similarity=0.299 Sum_probs=178.3
Q ss_pred CCCCCCCC--HHHHHHHHHCCCCCCCHHHHHHH-HHHHCCCCEEEECCCCCCHHHHHHHHHH--HHHHCCCCCCCCCCCC
Q ss_conf 99777998--89999999787987898999999-9997599699992898746899999999--9861042122556882
Q gi|254780601|r 1 MKIFENIP--QVIGEALSERGYVNLTSVQEAIL-NPDLREKDVLVSAQTGSGKTVAFGLALA--STLLAENDRFSPASAP 75 (573)
Q Consensus 1 m~~f~~l~--~~l~~~l~~~g~~~pt~iQ~~~i-p~~l~g~d~i~~a~TGsGKT~af~lp~l--~~l~~~~~~~~~~~~~ 75 (573)
|+.|.++| +.--.-|++. -+-|-=-|+..+ ..+.+.+-++....||||||.- ||-. +...... .
T Consensus 24 iNpf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~~--------~ 92 (699)
T KOG0925 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSHL--------T 92 (699)
T ss_pred CCCCCCCCCCHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--CCHHHHHHHHHHC--------C
T ss_conf 38878995767799999877-50855777999999986482699993488886454--7499999987633--------6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHH-----HHHCCCC---CCC
Q ss_conf 79998499899999999999985446987999988998799999612897599822310133-----2100012---246
Q gi|254780601|r 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD-----HIRGKGL---NIS 147 (573)
Q Consensus 76 ~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d-----~~~~~~l---~l~ 147 (573)
++..--|-|--|+||+.-. +...++.+.--+ |.++.-+ =.+||--++. |+-|... .|+
T Consensus 93 ~v~CTQprrvaamsva~RV---adEMDv~lG~EV-GysIrfE----------dC~~~~T~Lky~tDgmLlrEams~p~l~ 158 (699)
T KOG0925 93 GVACTQPRRVAAMSVAQRV---ADEMDVTLGEEV-GYSIRFE----------DCTSPNTLLKYCTDGMLLREAMSDPLLG 158 (699)
T ss_pred CEEECCCHHHHHHHHHHHH---HHHHCCCCCHHC-CCCCCCC----------CCCCHHHHHHHHCCHHHHHHHHCCCCCC
T ss_conf 6132471578899999988---887443102011-5321212----------3687158999953328999875085545
Q ss_pred CCEEEEEECCCCC-C----CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 4318999613110-0----1001235788875214334225631111222001111210123333233323256652000
Q gi|254780601|r 148 HLKAVVLDEADEM-L----DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222 (573)
Q Consensus 148 ~v~~lVlDEaD~m-l----~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~ 222 (573)
.-..+|||||.+- | -||. ++.++..-| +-..+..|||+.. .++ .+|..|+-.+.+.. ++| ++-+
T Consensus 159 ~y~viiLDeahERtlATDiLmGl---lk~v~~~rp-dLk~vvmSatl~a--~Kf-q~yf~n~Pll~Vpg---~~P-vEi~ 227 (699)
T KOG0925 159 RYGVIILDEAHERTLATDILMGL---LKEVVRNRP-DLKLVVMSATLDA--EKF-QRYFGNAPLLAVPG---THP-VEIF 227 (699)
T ss_pred CCCEEEECHHHHHHHHHHHHHHH---HHHHHHHCC-CCEEEEEECCCCH--HHH-HHHCCCCCEEECCC---CCC-EEEE
T ss_conf 30079953166666789999999---999986198-8169994060125--999-98707997564589---884-5788
Q ss_pred CCCCCCCHHHHHHHHC-CC---CCCCCEEEEECCCHHHHHHHHHHHHHC--------C-CCCCCCCCCCCHHHHH-HHHH
Q ss_conf 0000000024554200-10---235641677513023345655555422--------6-6630104899999999-9986
Q gi|254780601|r 223 AVLVALSDRDNAIVNI-LR---YHGAKNAIVFCSTRASVSRFTKVLAEH--------L-FQVVALSGELSQQERS-NALQ 288 (573)
Q Consensus 223 ~~~v~~~~k~~~l~~l-l~---~~~~~~~ivF~~t~~~~~~l~~~L~~~--------g-~~~~~lhg~~~q~~R~-~~~~ 288 (573)
|+.-.+.|.+++.++. ++ .+.+.-.+||.-...+.++.++.+... | .++.+||..+ .+|. ....
T Consensus 228 Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~--qq~iFep~p 305 (699)
T KOG0925 228 YTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQ--QQRIFEPAP 305 (699)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHH--HCCCCCCCC
T ss_conf 358887368999999999998416888789994677899999999999887525156883688458156--436567898
Q ss_pred HHHCC--CEEEEEECCCCCCCCCCCCCCEEEEECC------------------CCCHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 65448--8149985386500145788733897058------------------874789998603010378886025640
Q gi|254780601|r 289 MMRDG--RARVCIATDVAARGIDLPDLELVIHAEL------------------SSNPENLLHRSGRTGRAGRKGMSVFVI 348 (573)
Q Consensus 289 ~fr~g--~~~vLV~TDvaaRGiDi~~v~~Vin~d~------------------P~~~~~yvHR~GRtgRag~~G~ai~l~ 348 (573)
.=++| .-+|.|+|.+|.--+-+++|-+||--.+ |-+..+--+|.||.|| -+.|+|.-||
T Consensus 306 ~~~~~~~~RKvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr-t~pGkcfrLY 384 (699)
T KOG0925 306 EKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR-TRPGKCFRLY 384 (699)
T ss_pred CCCCCCCCCEEEEEECCHHEEEEECCEEEEECCCHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCC-CCCCCEEEEE
T ss_conf 454787665499981403405750647999667601300347520331013061167679987543078-9998368850
Q ss_pred CHHH
Q ss_conf 5999
Q gi|254780601|r 349 PQNM 352 (573)
Q Consensus 349 ~~~e 352 (573)
+++-
T Consensus 385 te~~ 388 (699)
T KOG0925 385 TEEA 388 (699)
T ss_pred CHHH
T ss_conf 0776
No 132
>KOG0384 consensus
Probab=99.29 E-value=3.3e-09 Score=81.09 Aligned_cols=310 Identities=20% Similarity=0.263 Sum_probs=182.7
Q ss_pred CCCCHHHHHHHHHHH----CCCCEEEECCCCCCHHH---HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 878989999999997----59969999289874689---99999999861042122556882799984998999999999
Q gi|254780601|r 21 VNLTSVQEAILNPDL----REKDVLVSAQTGSGKTV---AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~---af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~ 93 (573)
.++-.-|-.-+-.++ .+.++|..-.-|=|||. +|+=-+++.. .-.+|. ||+||---++.= .++
T Consensus 369 ~~LRDYQLeGlNWLl~~W~k~~n~ILADEMGLGKTvQtI~FLs~l~~~~--------~~~GPf-LvVvPLSTi~~W-~re 438 (1373)
T KOG0384 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL--------QIHGPF-LVVVPLSTITAW-ERE 438 (1373)
T ss_pred CCHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHC--------CCCCCE-EEEEECCCCHHH-HHH
T ss_conf 6144656313289999886468647540025774013459999999845--------447886-999864000789-999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHH-HH----HCC-----CCEEEEECCCCHHHHHHCCCCCCCCC--EEEEEECCCCCC
Q ss_conf 9998544698799998899879999-96----128-----97599822310133210001224643--189996131100
Q gi|254780601|r 94 LEWLYAKTGVVVAVCIGGVSVHRER-RD----LQN-----GAHIVVGTPGRLCDHIRGKGLNISHL--KAVVLDEADEML 161 (573)
Q Consensus 94 ~~~l~~~~~~~v~~~~gg~~~~~q~-~~----l~~-----~~~iiv~TPgrl~d~~~~~~l~l~~v--~~lVlDEaD~ml 161 (573)
|..+. .+++.+..|. -..+|. +. ++. .-++|++|=.-++ ...-.|+++ .++++|||-+|=
T Consensus 439 f~~Wt---dmN~ivY~G~-~~SR~~I~qYE~~~~~~~~~~KFn~LlTTyE~vL----kDk~~L~~i~W~~~~vDEAHRLK 510 (1373)
T KOG0384 439 FETWT---DMNVIVYHGN-LESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL----KDKAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHHH---HCCEEEEECC-HHHHHHHHHHHEEECCCCCEEEEEEEEHHHHHHH----CCHHHHCCCCEEEEEECHHHHHC
T ss_conf 99875---1465888266-5678999876504547775178876400189897----26888645752789741665506
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH----------------------------------------------
Q ss_conf 1001235788875214334225631111222001----------------------------------------------
Q gi|254780601|r 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITT---------------------------------------------- 195 (573)
Q Consensus 162 ~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~---------------------------------------------- 195 (573)
|-. -.+...|..+.-+...++...-+-+.|.+
T Consensus 511 N~~--s~Ly~~L~~f~~~hrlLiTGTPLQNsi~EL~sLL~Fl~P~kF~~~~ef~~e~~~~~e~~v~~Lq~~L~P~~LRRl 588 (1373)
T KOG0384 511 NDE--SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred CCH--HHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 504--489999998643075775478540319999999877375557867899887330238899999998768999998
Q ss_pred ----------------------HHHHHC-----CCCCCCCCCCCCCCCCC---C--------CHHCCCCC----------
Q ss_conf ----------------------111210-----12333323332325665---2--------00000000----------
Q gi|254780601|r 196 ----------------------LAKNYQ-----KDAVRVNIASENRQHSD---I--------DYRAVLVA---------- 227 (573)
Q Consensus 196 ----------------------l~~~~~-----~~p~~i~~~~~~~~~~~---i--------~~~~~~v~---------- 227 (573)
+-++|. +|.-.++-.....+ ++ | .|-|+.-.
T Consensus 589 KkDVEKSLp~K~E~IlrVels~lQk~yYk~ILtkN~~~LtkG~~g~~-~~llNimmELkKccNHpyLi~gaee~~~~~~~ 667 (1373)
T KOG0384 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFR 667 (1373)
T ss_pred HHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 88775227863122565405678999999999853999836678898-02999999999864780004858888887653
Q ss_pred -------------CCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf -------------0002455420010--2356416775130233456555554226663010489999999999866544
Q gi|254780601|r 228 -------------LSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 (573)
Q Consensus 228 -------------~~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~ 292 (573)
.+-|+-.|-+||- .....+++||-.-....+-|+++|..+||...-|-|.+.-+.|.+++++|..
T Consensus 668 ~~~~d~~l~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AiDhFna 747 (1373)
T KOG0384 668 DKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNA 747 (1373)
T ss_pred HCCHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 01467999999971685886987789986189459971999999999999999738861114687616889988874369
Q ss_pred ---CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCE--EEEEECHH
Q ss_conf ---881499853865001457887338970588747899986030103788860--25640599
Q gi|254780601|r 293 ---GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQN 351 (573)
Q Consensus 293 ---g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~--ai~l~~~~ 351 (573)
..+-+|.||=...-||++-.-|.||.||--.++..=++-.-|+-|-|++-. .+=||+.+
T Consensus 748 p~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384 748 PDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 9988649998315676640224466699968999950578999988660664547899974578
No 133
>KOG0390 consensus
Probab=99.26 E-value=8.7e-09 Score=78.28 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=177.6
Q ss_pred CCCHHHHHHHHHHH---CCC-------CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 78989999999997---599-------69999289874689999999998610421225568827999849989999999
Q gi|254780601|r 22 NLTSVQEAILNPDL---REK-------DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l---~g~-------d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~ 91 (573)
.+-|-|...+..+- .|. -+|..-.-|+|||+-. |+.|+.++.......+ .--.+||++|.- |..-=+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~-~~~k~lVV~P~s-Lv~nWk 314 (776)
T KOG0390 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKP-LINKPLVVAPSS-LVNNWK 314 (776)
T ss_pred HCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCCCCCC-CCCCCEEECCHH-HHHHHH
T ss_conf 1281578778997864113111588875472078876407888-9999999986867554-446607984588-887899
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHC----CC-----CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 9999985446987999988998799999612----89-----75998223101332100012246431899961311001
Q gi|254780601|r 92 RELEWLYAKTGVVVAVCIGGVSVHRERRDLQ----NG-----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162 (573)
Q Consensus 92 ~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~----~~-----~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~ 162 (573)
++|.++...-.+....+||+.+- +..+++ -+ --|++-+=.-+.+++ ..+.+..+..+|+||+-++=+
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~--~~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390 315 KEFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYC--RKILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHCCCCCCCEEEEECCCCH--HHHHHHHHHHHHHHHEEEEEEECCHHHHHHHH--HHHHCCCCCEEEECCCCCCCC
T ss_conf 99987425355540454234525--66666789886221125787863699999999--998547898699779888562
Q ss_pred C--------------------H--HHHHHHHHH-----------------------------------------------
Q ss_conf 0--------------------0--123578887-----------------------------------------------
Q gi|254780601|r 163 L--------------------G--FRDDIEFIL----------------------------------------------- 173 (573)
Q Consensus 163 ~--------------------g--f~~~i~~i~----------------------------------------------- 173 (573)
. | |+.|+.+.+
T Consensus 391 ~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390 391 SDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 24589999974687736996077533469999788851570112553788877513442356778553545257999999
Q ss_pred -----------------HHCCCCCCEEEEECCCCCCC---HHHHH-------------------HHCCCCCCCCCCCCCC
Q ss_conf -----------------52143342256311112220---01111-------------------2101233332333232
Q gi|254780601|r 174 -----------------DSSPKKRRMLMFSATISPAI---TTLAK-------------------NYQKDAVRVNIASENR 214 (573)
Q Consensus 174 -----------------~~~p~~~q~~l~SAT~~~~i---~~l~~-------------------~~~~~p~~i~~~~~~~ 214 (573)
+.+|...-.++|-.--+... .+|.+ +..+.|-.+.......
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHHHEEECCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf 99997652211120345538885469999578089999999998777765431322558899898736877631332234
Q ss_pred C-----C-------CCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEC---CCHHHHHHHHHHH-HHCCCCCCCCCCCC
Q ss_conf 5-----6-------65200000000000245542001023564167751---3023345655555-42266630104899
Q gi|254780601|r 215 Q-----H-------SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC---STRASVSRFTKVL-AEHLFQVVALSGEL 278 (573)
Q Consensus 215 ~-----~-------~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~---~t~~~~~~l~~~L-~~~g~~~~~lhg~~ 278 (573)
. + ...++........-|+..|..++... ..++.+|| ..-..+.++.+.| .-+|+.+..|||+|
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 4412268576503212466655511566899999999998-652231799962289999999999765384489973877
Q ss_pred CHHHHHHHHHHHHCCCE--E-EEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE--EEE---CH
Q ss_conf 99999999866544881--4-9985386500145788733897058874789998603010378886025--640---59
Q gi|254780601|r 279 SQQERSNALQMMRDGRA--R-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--FVI---PQ 350 (573)
Q Consensus 279 ~q~~R~~~~~~fr~g~~--~-vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai--~l~---~~ 350 (573)
++.||..+++.|.+... . +|.+|-.-+-||++-+-+.||.||.+.++..=.+-+.|.=|.|++=.|+ -|+ +.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGti 709 (776)
T KOG0390 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTI 709 (776)
T ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCC
T ss_conf 66888899873359988741899854455576320134038995799982367899997645787426899996327981
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999985
Q gi|254780601|r 351 NMQRRAERLFREA 363 (573)
Q Consensus 351 ~e~~~~~~i~~~~ 363 (573)
+|..+-++..|..
T Consensus 710 EEk~~qrq~~K~~ 722 (776)
T KOG0390 710 EEKIYQRQTHKEG 722 (776)
T ss_pred HHHHHHHHHHHHH
T ss_conf 3888999987600
No 134
>KOG0387 consensus
Probab=99.26 E-value=5.5e-09 Score=79.59 Aligned_cols=325 Identities=19% Similarity=0.245 Sum_probs=197.0
Q ss_pred CCCCHHHHHHHHHHHC----CCCEEEECCCCCCHHH---HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 8789899999999975----9969999289874689---99999999861042122556882799984998999999999
Q gi|254780601|r 21 VNLTSVQEAILNPDLR----EKDVLVSAQTGSGKTV---AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~----g~d~i~~a~TGsGKT~---af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~ 93 (573)
..+.|-|+.++..+.+ +.-=|+--.-|=|||. ||+-.+.+.= +.. -.|||+||+-- --|=.++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~-----k~~----~paLIVCP~Ti-i~qW~~E 273 (923)
T KOG0387 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG-----KLT----KPALIVCPATI-IHQWMKE 273 (923)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHCC-----CCC----CCEEEECCHHH-HHHHHHH
T ss_conf 8864888988999999973257876201235764015899999875024-----325----86599824889-9999999
Q ss_pred HHHHHHHCCCEEEEEECCCCHH-------HHHH-H-H----CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 9998544698799998899879-------9999-6-1----289759982231013321000122464318999613110
Q gi|254780601|r 94 LEWLYAKTGVVVAVCIGGVSVH-------RERR-D-L----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 94 ~~~l~~~~~~~v~~~~gg~~~~-------~q~~-~-l----~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
+..+. ..++|..++|..+.. -+.+ . | -.+.+|+|.|=.-+. +....+.--.-.|+||||+-++
T Consensus 274 ~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387 274 FQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHHC--CCEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEHHHHC--CCCCCCCCCCCCEEEECCCCCC
T ss_conf 98747--6537999714776544443101344312220353046847997422420--0475234650347982376504
Q ss_pred CCC-------------------------------------------H----HHHHHH-----------------------
Q ss_conf 010-------------------------------------------0----123578-----------------------
Q gi|254780601|r 161 LDL-------------------------------------------G----FRDDIE----------------------- 170 (573)
Q Consensus 161 l~~-------------------------------------------g----f~~~i~----------------------- 170 (573)
=|- | |.+..+
T Consensus 350 rNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387 350 RNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred CCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHH
T ss_conf 69850899999861566648861862101089998776640677445517787630111003565789879999999999
Q ss_pred ---------HHH--------H-HCCCCC-CEEEEECCCCCCCHHHHHHHCCCCCC-------------CCCCCCCCCCCC
Q ss_conf ---------887--------5-214334-22563111122200111121012333-------------323332325665
Q gi|254780601|r 171 ---------FIL--------D-SSPKKR-RMLMFSATISPAITTLAKNYQKDAVR-------------VNIASENRQHSD 218 (573)
Q Consensus 171 ---------~i~--------~-~~p~~~-q~~l~SAT~~~~i~~l~~~~~~~p~~-------------i~~~~~~~~~~~ 218 (573)
.|| . .+|++- +.++|+-| +.=..+-..|++.+.. |.+-.+...||.
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT--~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLT--KLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--HHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHCCCCC
T ss_conf 9999876799999999886442178865258998566--99999999986059899997498441215188886458941
Q ss_pred CCHH----------C-CCCCCCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHH-HCCCCCCCCCCCCCHHHHH
Q ss_conf 2000----------0-00000002455420010--2356416775130233456555554-2266630104899999999
Q gi|254780601|r 219 IDYR----------A-VLVALSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERS 284 (573)
Q Consensus 219 i~~~----------~-~~v~~~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~-~~g~~~~~lhg~~~q~~R~ 284 (573)
+--. | -.+...-|+.+|..+|. ...+.+++.|..|+...+-+-.+|. ..||+...+.|--+...|.
T Consensus 508 ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~ 587 (923)
T KOG0387 508 LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ 587 (923)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 02676421235887678956521699999999998617977998413779999999998734785389715888620105
Q ss_pred HHHHHHHCCCE--EEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE--EEE---CHHHHHHHH
Q ss_conf 99866544881--49985386500145788733897058874789998603010378886025--640---599999999
Q gi|254780601|r 285 NALQMMRDGRA--RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--FVI---PQNMQRRAE 357 (573)
Q Consensus 285 ~~~~~fr~g~~--~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai--~l~---~~~e~~~~~ 357 (573)
..+++|.++.. -+|.+|-|..-|+++-.-+-||-||.-.++.+=.+---|.=|.|++-.++ =|+ +-+|.-+-+
T Consensus 588 ~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~r 667 (923)
T KOG0387 588 KLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHR 667 (923)
T ss_pred HHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 78986367874579999730355411245675589979999976425788888863574655999973277189999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780601|r 358 RLFR 361 (573)
Q Consensus 358 ~i~~ 361 (573)
+|-+
T Consensus 668 QI~K 671 (923)
T KOG0387 668 QIFK 671 (923)
T ss_pred HHHH
T ss_conf 9999
No 135
>KOG0392 consensus
Probab=99.24 E-value=1.3e-08 Score=77.14 Aligned_cols=330 Identities=20% Similarity=0.279 Sum_probs=188.5
Q ss_pred CCCHHHHHHH-------HHC-------CCCCCCHHHHHHHHHHHCCC-----------CEEEECCCCCCHHH-HHHHHHH
Q ss_conf 9988999999-------978-------79878989999999997599-----------69999289874689-9999999
Q gi|254780601|r 6 NIPQVIGEAL-------SER-------GYVNLTSVQEAILNPDLREK-----------DVLVSAQTGSGKTV-AFGLALA 59 (573)
Q Consensus 6 ~l~~~l~~~l-------~~~-------g~~~pt~iQ~~~ip~~l~g~-----------d~i~~a~TGsGKT~-af~lp~l 59 (573)
+||++|+..- +.+ .|.-|.||-+.-=..-.+|- +=|..---|=|||| +-++-..
T Consensus 938 gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAs 1017 (1549)
T KOG0392 938 GLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILAS 1017 (1549)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 64499998689899999984484458863316640478999988025899999873335454213463278999999978
Q ss_pred HHHHCCCCCCCCCCCCE-EEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 98610421225568827-99984998999999999999854469879999889987999996128975998223101332
Q gi|254780601|r 60 STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138 (573)
Q Consensus 60 ~~l~~~~~~~~~~~~~~-~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~ 138 (573)
++-....+ .....+. +||+||.- |+-.=+.++.+|..+ ++|...+|+--.....+.=-+..+|+|+.= |-
T Consensus 1018 d~y~r~s~--~~e~~~~PSLIVCPsT-LtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSY----Dv 1088 (1549)
T KOG0392 1018 DHYKRRSE--SSEFNRLPSLIVCPST-LTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSY----DV 1088 (1549)
T ss_pred HHHHHCCC--CHHHCCCCEEEECCCH-HHHHHHHHHHHHCCH--HHHHHHCCCHHHHHHHHHHCCCCCEEEEEH----HH
T ss_conf 88750246--6011358758988700-114899999875630--123431377587777775436665699658----99
Q ss_pred HHCCCCCC--CCCEEEEEECCCCCCC----------------------------------------CHHHHH--------
Q ss_conf 10001224--6431899961311001----------------------------------------001235--------
Q gi|254780601|r 139 IRGKGLNI--SHLKAVVLDEADEMLD----------------------------------------LGFRDD-------- 168 (573)
Q Consensus 139 ~~~~~l~l--~~v~~lVlDEaD~ml~----------------------------------------~gf~~~-------- 168 (573)
++.....| -.-.|.||||.--|=| -||...
T Consensus 1089 ~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf 1168 (1549)
T KOG0392 1089 VRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRF 1168 (1549)
T ss_pred HHHHHHHHHHCCCCEEEECCCCEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 88789999855222699407604211388999999997640237740887666799999999984666567188898875
Q ss_pred HH---------------------------------------HHHHHCCCC-CCEEEEECCCCCCCHH----HHH------
Q ss_conf 78---------------------------------------887521433-4225631111222001----111------
Q gi|254780601|r 169 IE---------------------------------------FILDSSPKK-RRMLMFSATISPAITT----LAK------ 198 (573)
Q Consensus 169 i~---------------------------------------~i~~~~p~~-~q~~l~SAT~~~~i~~----l~~------ 198 (573)
.+ .+|+.+|++ -|-.-+ +|++-=.+ +++
T Consensus 1169 ~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyC--eLs~lQ~kLY~df~~~~k~~~ 1246 (1549)
T KOG0392 1169 GKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYC--ELSPLQKKLYRDFVKKAKQCV 1246 (1549)
T ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEE--CCCHHHHHHHHHHHHHHCCCC
T ss_conf 550454238655666787648899999998889999998888876488565331034--067899999999988750352
Q ss_pred ----------------------HHC----CCCCCCCCCCCCCCCCC----CCHHCCC------CCCCHHHHHHHHCCCCC
Q ss_conf ----------------------210----12333323332325665----2000000------00000245542001023
Q gi|254780601|r 199 ----------------------NYQ----KDAVRVNIASENRQHSD----IDYRAVL------VALSDRDNAIVNILRYH 242 (573)
Q Consensus 199 ----------------------~~~----~~p~~i~~~~~~~~~~~----i~~~~~~------v~~~~k~~~l~~ll~~~ 242 (573)
+|| ++|..|... .||. +.|.+.. +...-|+.+|..||...
T Consensus 1247 ~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~----~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eC 1322 (1549)
T KOG0392 1247 SSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP----VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSEC 1322 (1549)
T ss_pred CCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEECC----CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 00346432105751488999999999854896444277----75029999878877401477765352678999999981
Q ss_pred ----------------CCCEEEEECCCHHHHHHHHHHHHHCCC-CCC--CCCCCCCHHHHHHHHHHHHCC-CEEEEE-EC
Q ss_conf ----------------564167751302334565555542266-630--104899999999998665448-814998-53
Q gi|254780601|r 243 ----------------GAKNAIVFCSTRASVSRFTKVLAEHLF-QVV--ALSGELSQQERSNALQMMRDG-RARVCI-AT 301 (573)
Q Consensus 243 ----------------~~~~~ivF~~t~~~~~~l~~~L~~~g~-~~~--~lhg~~~q~~R~~~~~~fr~g-~~~vLV-~T 301 (573)
...+++|||.-|...+-+..-|.+.-+ ++. .|.|..+..+|..+.++|.++ .++||+ +|
T Consensus 1323 Gig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTT 1402 (1549)
T KOG0392 1323 GIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTT 1402 (1549)
T ss_pred CCCCCCCCCCCCCCHHCCCEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 78988753336710211551687640777999999998651147516997348889077799999716898513899962
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEE--EEEECH
Q ss_conf 8650014578873389705887478999860301037888602--564059
Q gi|254780601|r 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS--VFVIPQ 350 (573)
Q Consensus 302 DvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~a--i~l~~~ 350 (573)
-|..-||+.-+-|.||-|+--.++..=++-+-|+-|-|++-+. +-|++.
T Consensus 1403 hVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392 1403 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred ECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEHHC
T ss_conf 004532246787558997268883245788778886267315666630230
No 136
>KOG0389 consensus
Probab=99.10 E-value=3.2e-08 Score=74.47 Aligned_cols=319 Identities=18% Similarity=0.230 Sum_probs=182.8
Q ss_pred CCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8989999999997----599699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 23 LTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 23 pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
+-+-|.--+-+++ .+-+-|..-.-|-|||.- +|.-+..|..... .+|. ||+||.--|-.=. .++.++|
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-----~gpH-LVVvPsSTleNWl-rEf~kwC 471 (941)
T KOG0389 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-----PGPH-LVVVPSSTLENWL-REFAKWC 471 (941)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEHHHCCCCCHHH-HHHHHHHHHHCCC-----CCCC-EEEECCHHHHHHH-HHHHHHC
T ss_conf 34222022899999997423305322205763348-9999999997299-----9983-7992031688899-9999759
Q ss_pred HHCCCEEEEEECCCCHHHHHHHH-CC---CCEEEEECCCCHHHH-HHCCCCCCCCCEEEEEECCCCCCCC----------
Q ss_conf 44698799998899879999961-28---975998223101332-1000122464318999613110010----------
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDL-QN---GAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDL---------- 163 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l-~~---~~~iiv~TPgrl~d~-~~~~~l~l~~v~~lVlDEaD~ml~~---------- 163 (573)
..++|.+.||.+...++++.. ++ +-||+|.|=--...- -.|..|+--+..++|.||+-.|=++
T Consensus 472 --Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~ 549 (941)
T KOG0389 472 --PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS 549 (941)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHCCCHHHHHHHCC
T ss_conf --752877415768999999999861688852899872110388677899986666679961326542133498887506
Q ss_pred -------------------------HH---------HHHHH---------------------------------------
Q ss_conf -------------------------01---------23578---------------------------------------
Q gi|254780601|r 164 -------------------------GF---------RDDIE--------------------------------------- 170 (573)
Q Consensus 164 -------------------------gf---------~~~i~--------------------------------------- 170 (573)
.| .+|+.
T Consensus 550 I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389 550 INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46553588518742012999999999974575532224799998246776430467788999999999754278899989
Q ss_pred -HHHHHCCCCCCEE---EEECCCCCCCHHHHHHH----------------------------------------------
Q ss_conf -8875214334225---63111122200111121----------------------------------------------
Q gi|254780601|r 171 -FILDSSPKKRRML---MFSATISPAITTLAKNY---------------------------------------------- 200 (573)
Q Consensus 171 -~i~~~~p~~~q~~---l~SAT~~~~i~~l~~~~---------------------------------------------- 200 (573)
.+|+++|++.|.+ .+|++.-.--.+++..+
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
T ss_conf 98987469743256764246389999999999985110432233102561399999987357257787603889999999
Q ss_pred --CCCCCCCCCCCCCCC------CCCCCHHC----------CCCC-----CCHHHHHHHHCCCC--CCCCEEEEECCCHH
Q ss_conf --012333323332325------66520000----------0000-----00024554200102--35641677513023
Q gi|254780601|r 201 --QKDAVRVNIASENRQ------HSDIDYRA----------VLVA-----LSDRDNAIVNILRY--HGAKNAIVFCSTRA 255 (573)
Q Consensus 201 --~~~p~~i~~~~~~~~------~~~i~~~~----------~~v~-----~~~k~~~l~~ll~~--~~~~~~ivF~~t~~ 255 (573)
|+.|.+-... .... ..+++-+- +..+ -+-|...|..||.. .+..+++||-.--.
T Consensus 710 ~il~e~ay~~~n-~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389 710 RILNEPAYKKAN-EQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHCCHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf 972755332027-8888998876518999999986578765323884443003276999987887616877999608889
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHC
Q ss_conf 345655555422666301048999999999986654488--149985386500145788733897058874789998603
Q gi|254780601|r 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR--ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333 (573)
Q Consensus 256 ~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~--~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~G 333 (573)
..+-|-..|...||+-.-|.|.-.-+.|...++.|...+ .-+|.+|-...-||++..-++||.||+-.++-.=.+---
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 99999999986273378614886413899999862667755799986146765021123645899605779755204688
Q ss_pred CCCCCCC--CCEEEEEECHHH
Q ss_conf 0103788--860256405999
Q gi|254780601|r 334 RTGRAGR--KGMSVFVIPQNM 352 (573)
Q Consensus 334 RtgRag~--~G~ai~l~~~~e 352 (573)
||-|.|+ +-+.+-|++.+-
T Consensus 869 RcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389 869 RCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHHHHCCCCEEEEEEEEECCC
T ss_conf 887617854069999874571
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=99.09 E-value=2.2e-09 Score=82.24 Aligned_cols=323 Identities=18% Similarity=0.229 Sum_probs=172.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCC-----CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH
Q ss_conf 999997879878989999999997599-----699992898746899999999986104212255688279998499899
Q gi|254780601|r 12 GEALSERGYVNLTSVQEAILNPDLREK-----DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86 (573)
Q Consensus 12 ~~~l~~~g~~~pt~iQ~~~ip~~l~g~-----d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL 86 (573)
...|--..=.+|.|-|+.||...++|- --++.| .|||||..- |-|.+.+.. -+.|.|+|+-.|
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTs-LkisEala~----------~~iL~LvPSIsL 218 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTS-LKISEALAA----------ARILFLVPSISL 218 (1518)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE-CCCCCCCHH-HHHHHHHHH----------HHEEEECCHHHH
T ss_conf 65656478789983678999999862551667758983-378862137-889999864----------023654351899
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCH--------------------HHHHHHH-----CCCCEEEEECCCCHHHHHHC
Q ss_conf 9999999999854469879999889987--------------------9999961-----28975998223101332100
Q gi|254780601|r 87 AVQVGRELEWLYAKTGVVVAVCIGGVSV--------------------HRERRDL-----QNGAHIVVGTPGRLCDHIRG 141 (573)
Q Consensus 87 a~Qv~~~~~~l~~~~~~~v~~~~gg~~~--------------------~~q~~~l-----~~~~~iiv~TPgrl~d~~~~ 141 (573)
-.|..++-.. -+.+.++..++...... ..-...+ ..|--||.+|=..+.-.-+-
T Consensus 219 LsQTlrew~~-~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA 297 (1518)
T COG4889 219 LSQTLREWTA-QKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA 297 (1518)
T ss_pred HHHHHHHHHH-CCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf 9999998853-466551257886365234441232120478887574999999998753337838999702114878999
Q ss_pred CCCCCCCCEEEEEECCCCCCCC--------HHH--------HHHHHH-HHHCCC-----------CCCEEEEE----CCC
Q ss_conf 0122464318999613110010--------012--------357888-752143-----------34225631----111
Q gi|254780601|r 142 KGLNISHLKAVVLDEADEMLDL--------GFR--------DDIEFI-LDSSPK-----------KRRMLMFS----ATI 189 (573)
Q Consensus 142 ~~l~l~~v~~lVlDEaD~ml~~--------gf~--------~~i~~i-~~~~p~-----------~~q~~l~S----AT~ 189 (573)
...-+....+++.|||.+---. .|. ...+++ +..+|+ +.-..+.| +|+
T Consensus 298 Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f 377 (1518)
T COG4889 298 QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF 377 (1518)
T ss_pred HHCCCCCCCEEEECCHHCCCCCEECCCCCCCCEEECCCCCHHHHHHHHCCCCCHHHCHHHHHHHHHCCCEEECCCHHHHH
T ss_conf 97499975379744000144623225772010453376415888766600686021225453032114301125526554
Q ss_pred CCCCHHH------HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCC-CHHH--------------------HHHHHC-CCC
Q ss_conf 2220011------11210123333233323256652000000000-0024--------------------554200-102
Q gi|254780601|r 190 SPAITTL------AKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRD--------------------NAIVNI-LRY 241 (573)
Q Consensus 190 ~~~i~~l------~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~-~~k~--------------------~~l~~l-l~~ 241 (573)
.+++.+| .+-.|.++..+.+.-++......-|....-+. .-.. +-+.++ .+.
T Consensus 378 Geef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ 457 (1518)
T COG4889 378 GEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADT 457 (1518)
T ss_pred CHHHHCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 54662122677876401005258999831766524565630686434243445677777665665325536543676775
Q ss_pred CCCCEEEEECCCHHHHHHHHHH-----------HHHC--CCC--CCCCCCCCCHHHHHHHHH---HHHCCCEEEEEECCC
Q ss_conf 3564167751302334565555-----------5422--666--301048999999999986---654488149985386
Q gi|254780601|r 242 HGAKNAIVFCSTRASVSRFTKV-----------LAEH--LFQ--VVALSGELSQQERSNALQ---MMRDGRARVCIATDV 303 (573)
Q Consensus 242 ~~~~~~ivF~~t~~~~~~l~~~-----------L~~~--g~~--~~~lhg~~~q~~R~~~~~---~fr~g~~~vLV~TDv 303 (573)
....++|-||.+.+....+++. |.+. +++ +.-..|.|+.-+|.+-+. .|-...++||-----
T Consensus 458 ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 458 APMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHEEECCCHH
T ss_conf 07889999987667788788888999999999997326683688751467300888877886158899421011013315
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC--CC-CCEEEEE
Q ss_conf 50014578873389705887478999860301037--88-8602564
Q gi|254780601|r 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GR-KGMSVFV 347 (573)
Q Consensus 304 aaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa--g~-~G~ai~l 347 (573)
++.|+|||.++-||-||.-.+.-+-|+-+||.=|- |+ -|.-|+=
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred HHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 42378853412379866851288999999999872768766569987
No 138
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.06 E-value=1.7e-09 Score=82.96 Aligned_cols=99 Identities=27% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78989999999997599699992898746899999999986104212255688279998499899999999999985446
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~ 101 (573)
.+-|-|.+++..+++.+..++.++||||||...+ -++..+... ...+||++||++|+.|..+.+
T Consensus 3 ~LR~yQ~~a~~~~~~~~~~~i~~pTGsGKT~~~~-~~i~~~~~~--------~~~~lvlvp~~~L~~Q~~~~~------- 66 (103)
T pfam04851 3 ELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAA-KLIARLLKG--------KKKVLFLVPRKDLLEQALEEF------- 66 (103)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHC--------CCCEEEEECCHHHHHHHHHHH-------
T ss_conf 8729999999999963986999589998799999-999999846--------992999908299999999965-------
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 98799998899879999961289759982231013321000122464318999613110010012357888752143342
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q 181 (573)
.+|+|||-+.-...+ ...|++..+. +-
T Consensus 67 -------------------------------------------------lii~DE~H~~~a~~~---~~~l~~~~~~-~~ 93 (103)
T pfam04851 67 -------------------------------------------------VIIIDEAHHSSAKTK---YRKILEYFKP-AF 93 (103)
T ss_pred -------------------------------------------------HHHHHHHHHCCCHHH---HHHHHHHCCC-CE
T ss_conf -------------------------------------------------646016352353789---9999995772-60
Q ss_pred EEEEECCC
Q ss_conf 25631111
Q gi|254780601|r 182 MLMFSATI 189 (573)
Q Consensus 182 ~~l~SAT~ 189 (573)
.+-||||-
T Consensus 94 ~lGlTATP 101 (103)
T pfam04851 94 LLGLTATP 101 (103)
T ss_pred EEEEEECC
T ss_conf 89980088
No 139
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.95 E-value=4.3e-07 Score=66.89 Aligned_cols=318 Identities=22% Similarity=0.227 Sum_probs=175.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87987898999999999759969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 18 ~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+|.. |..+|...--.+..|. |.--.||-||||.-.+|+--.-+.. + -+.+++..-=||.-=++++..+
T Consensus 77 lg~r-~~dVQliG~i~lh~g~--iaEM~TGEGKTL~atlp~ylnaL~g--k-------gVhvVTvNdYLA~RDae~m~~l 144 (822)
T COG0653 77 LGMR-HFDVQLLGGIVLHLGD--IAEMRTGEGKTLVATLPAYLNALAG--K-------GVHVVTVNDYLARRDAEWMGPL 144 (822)
T ss_pred CCCC-HHHHHHHHCHHHCCCC--EEEEECCCCHHHHHHHHHHHHHCCC--C-------CCEEEEEHHHHHHHCHHHHHHH
T ss_conf 2897-2369996123523781--4455437735999889999972389--9-------7489500487744289998999
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHH-HHHHC------CCCCCCCCEEEEEECCCCCC-C-------
Q ss_conf 544698799998899879999961289759982231013-32100------01224643189996131100-1-------
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC-DHIRG------KGLNISHLKAVVLDEADEML-D------- 162 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~-d~~~~------~~l~l~~v~~lVlDEaD~ml-~------- 162 (573)
..++|+.|..+..+++...+..+- .|||.-+|-..+- |.+.- .-.-.....|.|+||+|-+| |
T Consensus 145 ~~~LGLsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLi 222 (822)
T COG0653 145 YEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLI 222 (822)
T ss_pred HHHCCCCEEECCCCCCHHHHHHHH--HCCCEECCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCHHHEEEECCCCCEE
T ss_conf 987688232235889867868887--337543055001755222143205877550368838875514400000366523
Q ss_pred -CH---H----HHHHHHHHHHCCC---------CCCEEEEECCCCC--------------CCH-------HHH--HHHCC
Q ss_conf -00---1----2357888752143---------3422563111122--------------200-------111--12101
Q gi|254780601|r 163 -LG---F----RDDIEFILDSSPK---------KRRMLMFSATISP--------------AIT-------TLA--KNYQK 202 (573)
Q Consensus 163 -~g---f----~~~i~~i~~~~p~---------~~q~~l~SAT~~~--------------~i~-------~l~--~~~~~ 202 (573)
-| + ...+..+...+.. .++..|...-+.+ .+. .|. ..|.+
T Consensus 223 ISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~ 302 (822)
T COG0653 223 ISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFR 302 (822)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 21666567259999999998743454536531322033143429999998484101453667777568999987887632
Q ss_pred CCC------------------------------------CCCCCCCCCCCCCCCH-HCC---------------------
Q ss_conf 233------------------------------------3323332325665200-000---------------------
Q gi|254780601|r 203 DAV------------------------------------RVNIASENRQHSDIDY-RAV--------------------- 224 (573)
Q Consensus 203 ~p~------------------------------------~i~~~~~~~~~~~i~~-~~~--------------------- 224 (573)
|-- .+.+...+.+...|+. -|+
T Consensus 303 D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gMTGTA~te~~EF~ 382 (822)
T COG0653 303 DVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFD 382 (822)
T ss_pred CCEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 87169856908998456687666868881668999984488533363664468599999876887467776056788889
Q ss_pred -------------------------CCCCCHHHHHHHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------------------------000000245542001-0-2356416775130233456555554226663010489
Q gi|254780601|r 225 -------------------------LVALSDRDNAIVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 (573)
Q Consensus 225 -------------------------~v~~~~k~~~l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~ 277 (573)
+-....|+.++..-+ + ...+..+||-+.+....+.+...|.+.|+....|...
T Consensus 383 ~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 383 VIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred HHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCCEEECCC
T ss_conf 87477126623788656778122003527988999999999999659988976731422526778998649974044043
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC-----------EEEEECCCC--CHHHHHHHHCCCCCCCCCCEE
Q ss_conf 9999999998665448814998538650014578873-----------389705887--478999860301037888602
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE-----------LVIHAELSS--NPENLLHRSGRTGRAGRKGMS 344 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~-----------~Vin~d~P~--~~~~yvHR~GRtgRag~~G~a 344 (573)
- .+|+.-+-.+--..--|-|||..|.||-||.=-. |||--.--. -+..+ ==||+||-|-.|.+
T Consensus 463 ~--h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQ--LRGRsGRQGDpG~S 538 (822)
T COG0653 463 N--HAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQ--LRGRAGRQGDPGSS 538 (822)
T ss_pred C--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHH--HHCCCCCCCCCCHH
T ss_conf 6--7999998761278886631653246775203689778999707856873254215677777--50455568996433
Q ss_pred EEEECHHHH
Q ss_conf 564059999
Q gi|254780601|r 345 VFVIPQNMQ 353 (573)
Q Consensus 345 i~l~~~~e~ 353 (573)
-.|++-.+.
T Consensus 539 ~F~lSleD~ 547 (822)
T COG0653 539 RFYLSLEDD 547 (822)
T ss_pred HHHHHHHHH
T ss_conf 102323899
No 140
>KOG1123 consensus
Probab=98.89 E-value=8.4e-08 Score=71.66 Aligned_cols=299 Identities=17% Similarity=0.206 Sum_probs=171.2
Q ss_pred CCCCHHHHHHHHHHH-CC--CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 878989999999997-59--969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 21 VNLTSVQEAILNPDL-RE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l-~g--~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+.+.|-|+.++..+. +| +.=|+.-|-|.|||+-= +.....+ .-.+||||.+---+.|-..++..+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVG-vTAa~ti-----------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG-VTAACTI-----------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEE-EEEEEEE-----------CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 5557537878999737885447618985699874254-5555455-----------142799955756699999998745
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCC-------------CHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 544698799998899879999961289759982231-------------0133210001224643189996131100100
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG-------------RLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPg-------------rl~d~~~~~~l~l~~v~~lVlDEaD~ml~~g 164 (573)
+.-..-.++.... +.......++.|+|+|=- +++|.+ .-..-.+++|||+...-.+=
T Consensus 369 sti~d~~i~rFTs-----d~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l-----~~~EWGllllDEVHvvPA~M 438 (776)
T KOG1123 369 STIQDDQICRFTS-----DAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFL-----RGREWGLLLLDEVHVVPAKM 438 (776)
T ss_pred HCCCCCCEEEEEC-----CCCCCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHH-----HCCEEEEEEEEHHCCCHHHH
T ss_conf 0168554577202-----4454578988579987313110566427799999998-----43710168842111126999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH-HHCCCCCCCC-----CCCCCCC---------CCCCC---------
Q ss_conf 1235788875214334225631111222001111-2101233332-----3332325---------66520---------
Q gi|254780601|r 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAK-NYQKDAVRVN-----IASENRQ---------HSDID--------- 220 (573)
Q Consensus 165 f~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~-~~~~~p~~i~-----~~~~~~~---------~~~i~--------- 220 (573)
|+.-+..+-.+ -.+-..||+-.+=.++.. .||--|.... +...... .|...
T Consensus 439 FRRVlsiv~aH-----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~ 513 (776)
T KOG1123 439 FRRVLSIVQAH-----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRE 513 (776)
T ss_pred HHHHHHHHHHH-----HHCCCEEEEEECCCCCCCCCEEECCHHHHCCHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 99999999987-----6126514785126633333000054321124898974780467765314557788999999853
Q ss_pred ----HHCCCCCCCHHHHHHHHCCCCC--CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC-C
Q ss_conf ----0000000000245542001023--56416775130233456555554226663010489999999999866544-8
Q gi|254780601|r 221 ----YRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD-G 293 (573)
Q Consensus 221 ----~~~~~v~~~~k~~~l~~ll~~~--~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~-g 293 (573)
...+.+-+..|+.+-.-|+.++ ...+.|||....- .|.++-.+.|- -.+.|.-+|.+|.++++.|+. .
T Consensus 514 ~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvf---ALk~YAikl~K--pfIYG~Tsq~ERm~ILqnFq~n~ 588 (776)
T KOG1123 514 NTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVF---ALKEYAIKLGK--PFIYGPTSQNERMKILQNFQTNP 588 (776)
T ss_pred HHHHHHEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHCCC--CEEECCCCHHHHHHHHHHCCCCC
T ss_conf 14544122441740337889999999864983899825088---99999997089--63778885558999998534487
Q ss_pred CEEEEEECCCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHCCCCCCCC---CCEE---EEEECHH
Q ss_conf 814998538650014578873389705887-47899986030103788---8602---5640599
Q gi|254780601|r 294 RARVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGR---KGMS---VFVIPQN 351 (573)
Q Consensus 294 ~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~-~~~~yvHR~GRtgRag~---~G~a---i~l~~~~ 351 (573)
.++.+.-+-|+---||+|.-+..|+..--. +---=-+|.||.=||-+ ++.. ++||+..
T Consensus 589 ~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123 589 KVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 33348875035765567766089997245662278999988998776337602000244431064
No 141
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=98.85 E-value=7.9e-08 Score=71.82 Aligned_cols=136 Identities=24% Similarity=0.186 Sum_probs=101.8
Q ss_pred HHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 99999-78798789899999999975996999928987468999999999861042122556882799984998999999
Q gi|254780601|r 12 GEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV 90 (573)
Q Consensus 12 ~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv 90 (573)
.+|.. .+|. .|.++|-..--.+.+|+ |+.-+||=||||.-.+|+.-.-+.. -.+-|++..--||.-=
T Consensus 67 rEa~~R~lg~-r~ydvQl~ggi~L~~G~--IaEM~TGEGKTL~atl~a~l~AL~G---------k~VhvvTvNdYLA~RD 134 (381)
T pfam07517 67 REAAKRVLGM-RHYDVQLIGGLVLHEGK--IAEMKTGEGKTLTATLPAYLNALSG---------KGVHVVTVNDYLAKRD 134 (381)
T ss_pred HHHHHHHHCC-CCCCHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCC---------CCCEEEECCHHHHHHH
T ss_conf 9999999488-24526999899970487--2588769981199999999997379---------9748997588886889
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-----HHHHH--CCCCCCCCCEEEEEECCCCCC
Q ss_conf 999999854469879999889987999996128975998223101-----33210--001224643189996131100
Q gi|254780601|r 91 GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-----CDHIR--GKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 91 ~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-----~d~~~--~~~l~l~~v~~lVlDEaD~ml 161 (573)
++.+..++.++|++|.++..+++......+ -.|||+-||..-+ .|.+. ....-.....+.|+||||-||
T Consensus 135 ae~m~~vy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 210 (381)
T pfam07517 135 AEWMGPLYEFLGLSVGVITSDMSPEERREA--YNCDITYGTNSELGFDYLRDNMALSKEDKVQRGLNFAIVDEVDSIL 210 (381)
T ss_pred HHHHHHHHHHHCCEEEECCCCCCHHHHHHH--HHCCCEECCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCHHE
T ss_conf 999799999848605422788984888987--5166055032232144532344158254345777769997451121
No 142
>KOG1000 consensus
Probab=98.81 E-value=2.5e-06 Score=61.71 Aligned_cols=297 Identities=18% Similarity=0.236 Sum_probs=160.4
Q ss_pred CCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9878989999999997-59969999289874689-999999998610421225568827999849989999999999998
Q gi|254780601|r 20 YVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l-~g~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+..+.|-|..-+-..| .|.-+++.-.-|-|||+ |.+|.-.-+ .. .| .||+||.--+- --++++..+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyr---aE-------wp-lliVcPAsvrf-tWa~al~r~ 263 (689)
T KOG1000 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYR---AE-------WP-LLIVCPASVRF-TWAKALNRF 263 (689)
T ss_pred HHHHCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH---HC-------CC-EEEEECHHHHH-HHHHHHHHH
T ss_conf 87617035654788985387399841245416889999999986---04-------86-79992278868-999999985
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 54469879999889987999996128975998223101332100012246431899961311001001235788875214
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p 177 (573)
.... ..|..+.++.+.-.. +-.-..|.|-.=. ++.|+ +..+.-..-+.+|+||.. ||..+-..-++.++..+-
T Consensus 264 lps~-~pi~vv~~~~D~~~~---~~t~~~v~ivSye-~ls~l-~~~l~~~~~~vvI~DEsH-~Lk~sktkr~Ka~~dllk 336 (689)
T KOG1000 264 LPSI-HPIFVVDKSSDPLPD---VCTSNTVAIVSYE-QLSLL-HDILKKEKYRVVIFDESH-MLKDSKTKRTKAATDLLK 336 (689)
T ss_pred CCCC-CCEEEEECCCCCCCC---CCCCCEEEEEEHH-HHHHH-HHHHHCCCCEEEEEECHH-HHHCCCHHHHHHHHHHHH
T ss_conf 3102-604788526677654---5667727898789-99999-998736541189971256-541011223666656998
Q ss_pred CCCCEEEEECCC----C---------------CCCHHHHHHHCCC---CCCCC---------------------------
Q ss_conf 334225631111----2---------------2200111121012---33332---------------------------
Q gi|254780601|r 178 KKRRMLMFSATI----S---------------PAITTLAKNYQKD---AVRVN--------------------------- 208 (573)
Q Consensus 178 ~~~q~~l~SAT~----~---------------~~i~~l~~~~~~~---p~~i~--------------------------- 208 (573)
.-...+|.|-|= | +...+++.+|..- +...+
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HHHHEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76444772388556781442135554121004228998777537641102450377877899999999999999999988
Q ss_pred -----------------------------------CCCCCCCCCCCCHHCCCCCCCHHHHHHHH------CCCCCCCCEE
Q ss_conf -----------------------------------33323256652000000000002455420------0102356416
Q gi|254780601|r 209 -----------------------------------IASENRQHSDIDYRAVLVALSDRDNAIVN------ILRYHGAKNA 247 (573)
Q Consensus 209 -----------------------------------~~~~~~~~~~i~~~~~~v~~~~k~~~l~~------ll~~~~~~~~ 247 (573)
+...+..+.....+ |.-...-|..+.+. +|-...+.+.
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~-y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLF-YSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHCCCCCCCCCCEE
T ss_conf 7538801048999747862267899998753200123666656778878-987511020889999974744456887359
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC-EEEEE-ECCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 77513023345655555422666301048999999999986654488-14998-53865001457887338970588747
Q gi|254780601|r 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR-ARVCI-ATDVAARGIDLPDLELVIHAELSSNP 325 (573)
Q Consensus 248 ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~-~~vLV-~TDvaaRGiDi~~v~~Vin~d~P~~~ 325 (573)
+|||......+.+...+..+++...-+.|..+-..|....++|...+ +.|-| .-..++-||++..-+.|+-.++|.++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCEEEEEEECCCC
T ss_conf 99941487999999999874797588569898434789998731463147999998631444146513258999823787
Q ss_pred ------HHHHHHHCCCC
Q ss_conf ------89998603010
Q gi|254780601|r 326 ------ENLLHRSGRTG 336 (573)
Q Consensus 326 ------~~yvHR~GRtg 336 (573)
|+-+||+|.|.
T Consensus 576 gvLlQAEDRaHRiGQks 592 (689)
T KOG1000 576 GVLLQAEDRAHRIGQKS 592 (689)
T ss_pred CEEEECHHHHHHCCCCC
T ss_conf 54775146566405665
No 143
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=98.80 E-value=1.7e-06 Score=62.78 Aligned_cols=305 Identities=20% Similarity=0.218 Sum_probs=176.7
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87987898999999999759969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 18 ~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+| ..|..||-..=-.+..|+ |+--+||=||||.=.||+== .....+ -|-|++=.-=||.-=++.+..+
T Consensus 57 lG-~r~fDVQliGg~~LH~G~--IAEMkTGEGKTL~AtLpaYL--NAL~Gk-------GVHvVTVNdYLA~RD~e~m~~v 124 (904)
T TIGR00963 57 LG-LRPFDVQLIGGIVLHKGK--IAEMKTGEGKTLVATLPAYL--NALTGK-------GVHVVTVNDYLARRDAEWMGQV 124 (904)
T ss_pred HC-CCCHHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHH--HHHCCC-------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 37-856189999999980896--67831488628999999998--765179-------6279963504448889987899
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCC-----CHHHHHH--CCCCCCCCCEEEEEECCCCCC-C-------
Q ss_conf 544698799998899879999961289759982231-----0133210--001224643189996131100-1-------
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG-----RLCDHIR--GKGLNISHLKAVVLDEADEML-D------- 162 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPg-----rl~d~~~--~~~l~l~~v~~lVlDEaD~ml-~------- 162 (573)
..++|+.|-++..+++-..... .-.|||.-+|=- -|.|-|. ..-.-.....|.|+||.|=.| |
T Consensus 125 ~~FLGL~VGl~~~~m~~~eRr~--aY~cDITY~TNnELGFDYLRDNM~~~~ee~vqR~f~FAIIDEVDSILIDEARTPLI 202 (904)
T TIGR00963 125 YRFLGLSVGLILSSMSPEERRE--AYACDITYGTNNELGFDYLRDNMALSKEEKVQRPFNFAIIDEVDSILIDEARTPLI 202 (904)
T ss_pred HHHCCCEEEEECCCCCHHHHHH--HHCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEEECCEEECCCCCCCC
T ss_conf 9684936888617998589999--85498165326542024666764115012101672226886424464233368652
Q ss_pred --------CHHHHHHHHHHHHC---CCCCCEEEEECCCC-C-C----------------------CHH---HH-------
Q ss_conf --------00123578887521---43342256311112-2-2----------------------001---11-------
Q gi|254780601|r 163 --------LGFRDDIEFILDSS---PKKRRMLMFSATIS-P-A----------------------ITT---LA------- 197 (573)
Q Consensus 163 --------~gf~~~i~~i~~~~---p~~~q~~l~SAT~~-~-~----------------------i~~---l~------- 197 (573)
+.-.-.|+.|+..+ ...+|.--|+++|. . + +++ +.
T Consensus 203 ISGpae~~~~~Y~ev~~~~~~l~e~~~~p~a~~~~~~l~e~W~~dY~vDeK~r~v~Lte~G~~~WaE~~L~~~g~~~~~~ 282 (904)
T TIGR00963 203 ISGPAEKSTEKYLEVNKLVDPLKETDKLPQANEVAKALKEKWDVDYEVDEKNRNVLLTEKGMKKWAEDLLGVDGIIKGAV 282 (904)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 35766786301001787886641665575044568998631167703510417465140117899987532432144301
Q ss_pred HH---------------------HCCCC------------------------------------CCCCCCCCCCCCCCCC
Q ss_conf 12---------------------10123------------------------------------3332333232566520
Q gi|254780601|r 198 KN---------------------YQKDA------------------------------------VRVNIASENRQHSDID 220 (573)
Q Consensus 198 ~~---------------------~~~~p------------------------------------~~i~~~~~~~~~~~i~ 220 (573)
.. |.+|- +.|.+..++.|..+|+
T Consensus 283 nLyd~~n~~~~hyi~nALkA~~lf~kDvdYIV~dgeV~IVDEFTGRim~GRR~SdGLHQAiEAKE~V~I~~En~T~AtIT 362 (904)
T TIGR00963 283 NLYDLENSPLIHYILNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATIT 362 (904)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEHH
T ss_conf 30124533458889999999998743983588888789987305833889612422579999746860103552244044
Q ss_pred HHCC-----------------------------------------------CCCCCHHHHHHHH-CCCCC-CCCEEEEEC
Q ss_conf 0000-----------------------------------------------0000002455420-01023-564167751
Q gi|254780601|r 221 YRAV-----------------------------------------------LVALSDRDNAIVN-ILRYH-GAKNAIVFC 251 (573)
Q Consensus 221 ~~~~-----------------------------------------------~v~~~~k~~~l~~-ll~~~-~~~~~ivF~ 251 (573)
..-| +..+..|+.|+.. +.+.| ...-+||=+
T Consensus 363 yQNfFrlY~KLsGMTGTA~TE~~EF~~IYnL~Vv~vPTNrp~~R~D~~DlvY~te~~Kw~Av~~e~~~~h~~GqPvLvGT 442 (904)
T TIGR00963 363 YQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLPDLVYKTEEEKWKAVVDEIKEIHAKGQPVLVGT 442 (904)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 57676542654468775689999840457751355166772344677773464768899999999999874689877752
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CCCEEEEECCCCCHHHH
Q ss_conf 302334565555542266630104899999999998665448814998538650014578---87338970588747899
Q gi|254780601|r 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DLELVIHAELSSNPENL 328 (573)
Q Consensus 252 ~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v~~Vin~d~P~~~~~y 328 (573)
-+.+.-|.|+..|.+.|++-..|+..=.+.+|+.-+=.=--.+-.|=|||+-|.||-||- |+++..--.+ .+-+
T Consensus 443 ~svE~SE~LS~lL~~~~I~H~VLNAKPENh~rEAeIia~AG~kGAVTIATNMAGRGTDI~LGGN~~f~ar~~l---~~~l 519 (904)
T TIGR00963 443 TSVEKSELLSKLLKERGIPHNVLNAKPENHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLGGNPDFLARKKL---REIL 519 (904)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCHHHHHHHHH---HHHH
T ss_conf 2177789999999857898122478744677899999960888641676247877645031787888768999---9999
Q ss_pred HHHHCCCCCCCC
Q ss_conf 986030103788
Q gi|254780601|r 329 LHRSGRTGRAGR 340 (573)
Q Consensus 329 vHR~GRtgRag~ 340 (573)
+.++-|+ =.|.
T Consensus 520 ~~~~~~~-~~~~ 530 (904)
T TIGR00963 520 MPKIVSL-EDKF 530 (904)
T ss_pred HHHHHCC-CCCH
T ss_conf 9885113-4530
No 144
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=98.63 E-value=3.7e-07 Score=67.31 Aligned_cols=297 Identities=19% Similarity=0.243 Sum_probs=176.1
Q ss_pred CCCCHHHHHHHH-HHH-CCC--CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 878989999999-997-599--6999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 21 VNLTSVQEAILN-PDL-REK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 21 ~~pt~iQ~~~ip-~~l-~g~--d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
+.+-|-|++++. -+. +|| .=|+.=|=|-||||. ++-+...+. -.+||||-.-==+.|=..+|+.
T Consensus 268 t~~RPYQEKSLrsKMFGNGRARSGiIVLPCGAGKsLV-GvTAACTvk-----------Ks~lVLctS~VSV~QW~~QFk~ 335 (756)
T TIGR00603 268 TVLRPYQEKSLRSKMFGNGRARSGIIVLPCGAGKSLV-GVTAACTVK-----------KSVLVLCTSAVSVEQWKQQFKL 335 (756)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCHH-HHHHHEEEE-----------EEEEEEECCCHHHHHHHHHHHH
T ss_conf 7889751110444566786110551776778883112-254420231-----------0078972671008899988752
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCC-------------CHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 8544698799998899879999961289759982231-------------013321000122464318999613110010
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG-------------RLCDHIRGKGLNISHLKAVVLDEADEMLDL 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPg-------------rl~d~~~~~~l~l~~v~~lVlDEaD~ml~~ 163 (573)
++.-..-.|+-.. | +........|-|+|+|=- ++++.| .-..=-++||||+-..=.-
T Consensus 336 WSti~d~~IcrFT---S--D~Ke~~~~~~gv~vsTYsMva~t~kRS~es~k~m~~l-----~~rEWGl~~LDEVHvvPA~ 405 (756)
T TIGR00603 336 WSTIDDSQICRFT---S--DAKEKFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWL-----TNREWGLILLDEVHVVPAA 405 (756)
T ss_pred CCCCCCCCCCCCC---C--CCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCC
T ss_conf 2688735511025---2--1357626653358873300024754318899999997-----0687317986110103500
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCC---CCCHHHHHHHCCCCCC-----CCCCCCC----------CC----------
Q ss_conf 012357888752143342256311112---2200111121012333-----3233323----------25----------
Q gi|254780601|r 164 GFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLAKNYQKDAVR-----VNIASEN----------RQ---------- 215 (573)
Q Consensus 164 gf~~~i~~i~~~~p~~~q~~l~SAT~~---~~i~~l~~~~~~~p~~-----i~~~~~~----------~~---------- 215 (573)
=|+.-|..|-.+ -.+-..|||= +.|.+|. ||=-|.. +.+.... +.
T Consensus 406 mFRrVlt~~~aH-----cKLGLTATLvREDdKI~DLN--FLIGPKLYEANWleL~~~GfIA~VqCAEVWCPMt~EFY~EY 478 (756)
T TIGR00603 406 MFRRVLTIVQAH-----CKLGLTATLVREDDKIQDLN--FLIGPKLYEANWLELQKKGFIANVQCAEVWCPMTPEFYREY 478 (756)
T ss_pred CCCCHHHHHHHH-----HCCCCCEEEECCCCCCCCCC--CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHH
T ss_conf 166010144332-----00143211001114303122--13572134532698820883688741210178877789999
Q ss_pred --CCCC-CHHCCCCCCCHHHHHHHHCCCCCC---CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --6652-000000000002455420010235---6416775130233456555554226663010489999999999866
Q gi|254780601|r 216 --HSDI-DYRAVLVALSDRDNAIVNILRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 (573)
Q Consensus 216 --~~~i-~~~~~~v~~~~k~~~l~~ll~~~~---~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~ 289 (573)
..+- +...++|=+-+|+.+=--|+.+|+ .+|.|||.. .|-.|.++=...| =-.++|.-+|.||.++|+.
T Consensus 479 L~~~~~~Kr~LLY~MNP~KFrACqFLI~fHE~~RgDKIIVFsD---NVfAL~~YA~kl~--KpfIYGpTsq~ER~~IL~n 553 (756)
T TIGR00603 479 LREKSRKKRMLLYVMNPNKFRACQFLIRFHERQRGDKIIVFSD---NVFALKEYAIKLG--KPFIYGPTSQQERMQILQN 553 (756)
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHHHCC--CCEEECCCCHHHHHHHHHH
T ss_conf 8551124430312038644357789888854148885899424---4789999998738--9654079871379999862
Q ss_pred HHC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHCCCCCC----------CCCCEE---EEEECHH
Q ss_conf 544-8814998538650014578873389705887-478999860301037----------888602---5640599
Q gi|254780601|r 290 MRD-GRARVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRA----------GRKGMS---VFVIPQN 351 (573)
Q Consensus 290 fr~-g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~-~~~~yvHR~GRtgRa----------g~~G~a---i~l~~~~ 351 (573)
|+. ..++.+.-+=|.=--||+|.-+.+|+-.-=. +---=-+|-||-=|| |+++.. ++||+.+
T Consensus 554 F~~n~~vnTIF~SKVGDtSiDlPEAnvlIQiSSH~GSRRQEAQRLGRILRAK~~~~~r~aggkE~YNAFFYSLVS~D 630 (756)
T TIGR00603 554 FKHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKKSDARMAGGKEEYNAFFYSLVSKD 630 (756)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCC
T ss_conf 15588645689843027751422142677653267740368764132016787513331377644220121013445
No 145
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.59 E-value=4.7e-07 Score=66.63 Aligned_cols=75 Identities=20% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 9878989999999997----599699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 20 YVNLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
| +|-|+|.+.+..+. +|+.+++.||||||||+|++.|+|..+....... .....++++-|...-.|+.++++
T Consensus 7 y-~py~~Q~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~al~~~~~~~~~~---~~~ki~~~t~t~~~~~~~~~elr 82 (289)
T smart00488 7 Y-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred C-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHCC---CCCEEEEEECCHHHHHHHHHHHH
T ss_conf 9-9998999999999999974997999899965189999999999999670102---45616876153788999999998
Q ss_pred HHH
Q ss_conf 985
Q gi|254780601|r 96 WLY 98 (573)
Q Consensus 96 ~l~ 98 (573)
++.
T Consensus 83 ~~~ 85 (289)
T smart00488 83 KLM 85 (289)
T ss_pred HHC
T ss_conf 632
No 146
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.59 E-value=4.7e-07 Score=66.63 Aligned_cols=75 Identities=20% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 9878989999999997----599699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 20 YVNLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
| +|-|+|.+.+..+. +|+.+++.||||||||+|++.|+|..+....... .....++++-|...-.|+.++++
T Consensus 7 y-~py~~Q~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~al~~~~~~~~~~---~~~ki~~~t~t~~~~~~~~~elr 82 (289)
T smart00489 7 Y-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred C-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHCC---CCCEEEEEECCHHHHHHHHHHHH
T ss_conf 9-9998999999999999974997999899965189999999999999670102---45616876153788999999998
Q ss_pred HHH
Q ss_conf 985
Q gi|254780601|r 96 WLY 98 (573)
Q Consensus 96 ~l~ 98 (573)
++.
T Consensus 83 ~~~ 85 (289)
T smart00489 83 KLM 85 (289)
T ss_pred HHC
T ss_conf 632
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3, Yersinia-type; InterPro: IPR013395 The helicase encoded in many CRISPR-associated (cas) gene clusters is designated Cas3. The Yersinia-type helicase Cas3 proteins differ from the more common Cas3 proteins by being considerably larger, though they still share a number of motifs, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc..
Probab=98.35 E-value=1.2e-06 Score=64.00 Aligned_cols=334 Identities=22% Similarity=0.308 Sum_probs=173.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 59969999289874689999999998610421225568827999849989999999999998544698799998899879
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~ 115 (573)
.|-=++=.|-||||||+|=+ =++..|..+. .+.+.=|=.--|-|.+|.-..++.=..-.+=.++.++||+...
T Consensus 442 ~G~f~vN~AsTGcGKT~aNa-r~~yaL~~~~------~G~R~a~ALgLR~LTLQTG~ALk~~L~L~d~~lAv~iG~~~~~ 514 (1153)
T TIGR02562 442 QGAFGVNMASTGCGKTLANA-RLMYALRDDK------QGLRFAIALGLRSLTLQTGSALKKRLNLSDDDLAVLIGGTAVK 514 (1153)
T ss_pred CCCEEEECCCCCCHHHHHHH-HHHHCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 79469862646843799999-9986177888------8740013432246788888999974178857636786528889
Q ss_pred H----HHHHHC----C-------------------------------------------CCEEEEECCCCHHHHHH----
Q ss_conf 9----999612----8-------------------------------------------97599822310133210----
Q gi|254780601|r 116 R----ERRDLQ----N-------------------------------------------GAHIVVGTPGRLCDHIR---- 140 (573)
Q Consensus 116 ~----q~~~l~----~-------------------------------------------~~~iiv~TPgrl~d~~~---- 140 (573)
. +.++++ . -+=||||| +|||-
T Consensus 515 ~Lf~~~~ek~e~~~~~gs~s~~~f~~~~~~~~~~~~~~~~~~~~~~~~ls~d~k~~~lL~aP~lvcT----iDhLi~A~E 590 (1153)
T TIGR02562 515 KLFDLSKEKIEQVDEDGSESAEKFLEEGQDCNLVDYDGALDTEELLSRLSKDDKLKKLLAAPVLVCT----IDHLIPATE 590 (1153)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHH----HHHCCCCCC
T ss_conf 9999877652020035688615550432116863236775414675431025455466525126655----432004677
Q ss_pred --CCC------CCCCCCEEEEEECCCCCCCCHHH-HHHHHHHHHCC----CCCCEEEEECCCCCCCHH-HHHHHC-----
Q ss_conf --001------22464318999613110010012-35788875214----334225631111222001-111210-----
Q gi|254780601|r 141 --GKG------LNISHLKAVVLDEADEMLDLGFR-DDIEFILDSSP----KKRRMLMFSATISPAITT-LAKNYQ----- 201 (573)
Q Consensus 141 --~~~------l~l~~v~~lVlDEaD~ml~~gf~-~~i~~i~~~~p----~~~q~~l~SAT~~~~i~~-l~~~~~----- 201 (573)
||. |.|= -.=|||||.| +|. +|+-.+...+. =.++++|.|||+|+.+.. |=+.|.
T Consensus 591 s~rgG~~i~p~LRll-sSDLiLDE~D-----dy~~~dLpAl~RLV~lAgL~GsrVllSSATL~p~lv~~lF~AY~aGr~~ 664 (1153)
T TIGR02562 591 SVRGGHHIAPMLRLL-SSDLILDEPD-----DYEREDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFKAYEAGRKI 664 (1153)
T ss_pred CCCCCEEHHHHHHHH-HHHHEECCCC-----CCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 544561078899875-3232004888-----8871234899999999998444142221366088999999999999999
Q ss_pred --------CCCCCCCCCC--CCCC-CCCCCHH--C--------------------------CCCCCC-------------
Q ss_conf --------1233332333--2325-6652000--0--------------------------000000-------------
Q gi|254780601|r 202 --------KDAVRVNIAS--ENRQ-HSDIDYR--A--------------------------VLVALS------------- 229 (573)
Q Consensus 202 --------~~p~~i~~~~--~~~~-~~~i~~~--~--------------------------~~v~~~------------- 229 (573)
..|+.|.+.- +... ..++.|. | +.+++-
T Consensus 665 y~~~~G~~~~~~~~cc~w~de~~~~~~~~~q~~~F~~~h~~F~~~r~~~L~~~p~~R~AeLLsLS~~kpr~Gn~s~~~~l 744 (1153)
T TIGR02562 665 YQALKGQPKKPLNICCAWVDEPQVVQADCNQKEEFIQRHQDFVRKRAEKLAKKPVRRLAELLSLSSLKPRKGNESVYLAL 744 (1153)
T ss_pred HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99746798886055653246467999864216999999888999999986267622302003688888656505679999
Q ss_pred -----HHHHHHHHCCCCCCC---CE---EEEECCCHHHHHHHHHHHHH----CC---CC--CCCCCCCCCHHHHHH----
Q ss_conf -----024554200102356---41---67751302334565555542----26---66--301048999999999----
Q gi|254780601|r 230 -----DRDNAIVNILRYHGA---KN---AIVFCSTRASVSRFTKVLAE----HL---FQ--VVALSGELSQQERSN---- 285 (573)
Q Consensus 230 -----~k~~~l~~ll~~~~~---~~---~ivF~~t~~~~~~l~~~L~~----~g---~~--~~~lhg~~~q~~R~~---- 285 (573)
++...|..+=-...| ++ ++|=+...+..-.|+..|.. .+ |. .+++|+.-.---|-.
T Consensus 745 a~~ll~~~~~LH~~h~~t~p~~~K~vSvGLiR~ANI~~~~~LAq~Ly~~~~~~~fadyqiHlc~YHa~~~L~~Rsy~E~r 824 (1153)
T TIGR02562 745 AESLLEGALRLHQLHAQTDPKSEKKVSVGLIRVANIDPLIRLAQALYALLAEEKFADYQIHLCVYHAQDPLLLRSYIERR 824 (1153)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 99999999999860266777678778886154403678999999987405400577136665303130289999999998
Q ss_pred ---HHHHHHCCC---------------------------EEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCC
Q ss_conf ---986654488---------------------------14998538650014578873389705887478999860301
Q gi|254780601|r 286 ---ALQMMRDGR---------------------------ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 (573)
Q Consensus 286 ---~~~~fr~g~---------------------------~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRt 335 (573)
+|.++..|+ .=|.++|-|..-|=|=+ -||-|- =|.++-+.|+=+||+
T Consensus 825 LD~~L~Rh~~GkkrktGn~~l~q~~ei~~~l~~~~~~~~lFivlatpV~EVGRDHD-YdWAi~--dpSSmrS~iQlAGRV 901 (1153)
T TIGR02562 825 LDKLLTRHKPGKKRKTGNEQLFQDDEIEDLLQNSPAKNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRV 901 (1153)
T ss_pred HHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCEECCCCCC-CCHHHH--CHHHHHHHHHHCCCC
T ss_conf 87750345776423331465313088998863160015864897167123067776-014452--324566787731643
Q ss_pred CCCCCCCEE----EEEECHHHHHHHH-HHHHHHHCCCCCCCC---CCHHH-----HHHHHHHHHHHH
Q ss_conf 037888602----5640599999999-999985066410568---99999-----888899865544
Q gi|254780601|r 336 GRAGRKGMS----VFVIPQNMQRRAE-RLFREANVSVVWEPA---PSVEA-----IRERDAQRILQD 389 (573)
Q Consensus 336 gRag~~G~a----i~l~~~~e~~~~~-~i~~~~~~~~~~~~~---Ps~ee-----I~~~~~~~l~~~ 389 (573)
-|-=.+-.+ |.+...|=+...+ .+|+.-...-...++ |.-|- ....++.++...
T Consensus 902 ~RHR~e~~~e~~N~~il~~N~r~~~~rd~ekrkqqskq~~~vY~~PGFE~~~~~~l~th~l~~L~~~ 968 (1153)
T TIGR02562 902 RRHRLEKVQEQPNIVILQKNYRALERRDIEKRKQQSKQKKPVYIRPGFETERVSRLSTHDLDQLLEE 968 (1153)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 0014675456623001045788887666677641057887256358866554200312338860563
No 148
>KOG0386 consensus
Probab=98.25 E-value=6.5e-05 Score=52.24 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=97.0
Q ss_pred CCHHHHHHHHCCCCC--CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEECC
Q ss_conf 000245542001023--5641677513023345655555422666301048999999999986654488---14998538
Q gi|254780601|r 228 LSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR---ARVCIATD 302 (573)
Q Consensus 228 ~~~k~~~l~~ll~~~--~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~---~~vLV~TD 302 (573)
..-|++.|-++|... ...+++.||--..--+-+.++|.-++|.-.-|.|.-.-.+|...++.|..-. .-+|..|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 31479999766088773276011577788889999999866242124415876614689999971599986256433210
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 6500145788733897058874789998603010378886025640
Q gi|254780601|r 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~ 348 (573)
....||+..-.+.||-||--.++.-..++--|.-|-|.+-.+-+|.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred CCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHEEEEE
T ss_conf 2555403211352788658888316799999999750212301123
No 149
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.19 E-value=1.4e-05 Score=56.63 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=101.3
Q ss_pred HHHHHHHHCC-C--CCCCC--EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 0245542001-0--23564--167751302334565555542266630104899999999998665448--814998538
Q gi|254780601|r 230 DRDNAIVNIL-R--YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG--RARVCIATD 302 (573)
Q Consensus 230 ~k~~~l~~ll-~--~~~~~--~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g--~~~vLV~TD 302 (573)
.|...+..++ . ..+.. +++||+......+-+...|...++....++|.++..+|...++.|.++ ..-+|++|-
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 05689999988899862777234888666059999999998558757987378752128899999864667757997530
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEE--EEEECHH
Q ss_conf 650014578873389705887478999860301037888602--5640599
Q gi|254780601|r 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS--VFVIPQN 351 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~a--i~l~~~~ 351 (573)
...-||+...-++||+||...++..+.+...|.-|.|++..+ +-|++..
T Consensus 772 agg~glnLt~a~~vi~~d~~wNp~~e~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf 057661214565246607763667999999878760780159999841137
No 150
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=98.08 E-value=0.00015 Score=49.82 Aligned_cols=240 Identities=18% Similarity=0.227 Sum_probs=117.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEE-----EECCCC
Q ss_conf 699992898746899999999986104212255688279998499899999999999985446987999-----988998
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-----CIGGVS 113 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~-----~~gg~~ 113 (573)
=.|+.||-|||||.|-+- -|...+... ...+||+.=-|--..-..+-++.- +-.|+-... +.+|.+
T Consensus 51 V~VVRAPMGSGKTTALi~-wL~~~L~~~-------d~SvLVVSCRRSFT~tL~~Rf~~a-GL~gFvtY~~s~~yim~~~~ 121 (829)
T pfam02399 51 VLVVRAPMGSGKTTALIE-WLRAALDSP-------DTSVLVVSCRRSFTQTLLDRFNDA-GLTGFVTYLDSTDYVMNGRP 121 (829)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHCCC-------CCEEEEEECHHHHHHHHHHHHHHC-CCCCCEEEEECCCEEECCCC
T ss_conf 689976888871899999-999973786-------654999970167899999999866-98651357504434767875
Q ss_pred HHH---HHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC------CHHHHHHHHHHHHC-CCCCCEE
Q ss_conf 799---9996128975998223101332100012246431899961311001------00123578887521-4334225
Q gi|254780601|r 114 VHR---ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD------LGFRDDIEFILDSS-PKKRRML 183 (573)
Q Consensus 114 ~~~---q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~------~gf~~~i~~i~~~~-p~~~q~~ 183 (573)
+.+ |+++|. |+-+ . -|++-..|||||.=-.+. |.....++.++-.+ ....|.+
T Consensus 122 f~RLiVQiESLH-----------RV~~----~--ll~~YDvLILDEVMSti~QlySpTM~~L~~VDall~~LLr~CprII 184 (829)
T pfam02399 122 FRRLIVQIESLH-----------RVDE----N--LLNNYDVLILDEVMSTIGQLYSPTMRRLKEVDALLLRLLRNCPRII 184 (829)
T ss_pred CCEEEEEEECCC-----------CCCH----H--HCCCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 323688851111-----------3883----3--4256677985778888887606888999999999999985498279
Q ss_pred EEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC--------------------------------------
Q ss_conf 631111222001111210123333233323256652000000--------------------------------------
Q gi|254780601|r 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-------------------------------------- 225 (573)
Q Consensus 184 l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~-------------------------------------- 225 (573)
.+-||....+.++...+..+. .|-+.-..-..++-.++-..
T Consensus 185 AMDAT~NaqlVd~La~lRG~~-nvhvIv~~yas~GFS~R~c~~l~~LG~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 263 (829)
T pfam02399 185 AMDATVNAQLVDFLAGLRGEE-NVHVIVNTYASPGFSNRRCTFLRTLGTDVLASVLRDEDEGAESSATPPHSPSGEPSAA 263 (829)
T ss_pred EECCHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCEEEEHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 840204289999999726888-0689981452666566638756433648899872872212234678888876654333
Q ss_pred --CCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf --000002455420010235641677513023345655555422666301048999999999986654488149985386
Q gi|254780601|r 226 --VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303 (573)
Q Consensus 226 --v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv 303 (573)
.....=+.-|.. ........=|||.|-.-.|-++.+....-=++..||+.-+..+ +..+ +.++|+|=|.|
T Consensus 264 ~~~~~~tFF~eL~~--rL~~G~NiCiFsSTvsFSe~vArFc~~ft~sVLvLnS~rp~~D----V~~W--~~yrVvIYTTV 335 (829)
T pfam02399 264 ISLRGATFFGELEA--RLEAGKNVCLFSSTVSFSEIVARFCARFTDSVLLLNSTRPKCD----VNSW--SRYRVVIYTTV 335 (829)
T ss_pred CCCCCCCHHHHHHH--HHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----CCCC--CCEEEEEEEEE
T ss_conf 56655657999999--9847980799944476999999999845890899708999855----0234--51579999988
Q ss_pred CCCCCCCCCC
Q ss_conf 5001457887
Q gi|254780601|r 304 AARGIDLPDL 313 (573)
Q Consensus 304 aaRGiDi~~v 313 (573)
.--||-++..
T Consensus 336 VTVGLSFD~~ 345 (829)
T pfam02399 336 VTVGLSFDPS 345 (829)
T ss_pred EEEEECCCHH
T ss_conf 9985023546
No 151
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=98.04 E-value=0.00038 Score=47.09 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=85.0
Q ss_pred HHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999997----5996999928987468999999999861042122556882799984998999999999999854469
Q gi|254780601|r 27 QEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG 102 (573)
Q Consensus 27 Q~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~ 102 (573)
|...+-.++ .|+..|..-.-|.|||+-- |.++..+..... .....||+||.- |..|=.+++.++.. +
T Consensus 2 Q~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~-ia~l~~~~~~~~-----~~~~~LIV~P~s-l~~~W~~Ei~~~~~--~ 72 (295)
T pfam00176 2 QLEGVNWLISLYNNGLGGILADEMGLGKTLQT-ISLLAYLKELKP-----LAGPHLVVCPLS-TLDNWLNEFEKWAP--D 72 (295)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCC-----CCCCEEEEECHH-HHHHHHHHHHHHCC--C
T ss_conf 78899999998727999897227875799999-999999998388-----999889997578-88767889998679--9
Q ss_pred CEEEEEECCCCHHHH-H-HHH-CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 879999889987999-9-961-2897599822310133210001224643189996131100100123578887521433
Q gi|254780601|r 103 VVVAVCIGGVSVHRE-R-RDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 (573)
Q Consensus 103 ~~v~~~~gg~~~~~q-~-~~l-~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~ 179 (573)
.++..++|..+.... . ..+ ..+.||||+|.+.+..... .+.--.-..+|+|||-.+=+. .......+..+..
T Consensus 73 ~~~~~~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~--~l~~~~w~~vI~DEaH~iKN~--~s~~~~a~~~l~~- 147 (295)
T pfam00176 73 LNIVVYYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKD--ELHKANWRYVILDEGHRIKNA--KSKLSLALKSLKT- 147 (295)
T ss_pred CCEEEEEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH--HHHCCCCCEEEEECCCCCCCH--HHHHHHHHHHCCC-
T ss_conf 70799984707689998867741688599930999997599--984087658998762012587--8899999995235-
Q ss_pred CCEEEEECC
Q ss_conf 422563111
Q gi|254780601|r 180 RRMLMFSAT 188 (573)
Q Consensus 180 ~q~~l~SAT 188 (573)
+..++.|+|
T Consensus 148 ~~r~~LTGT 156 (295)
T pfam00176 148 NNRLLLTGT 156 (295)
T ss_pred CCEEEEECC
T ss_conf 818998687
No 152
>KOG0952 consensus
Probab=97.90 E-value=2.8e-05 Score=54.71 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=10.0
Q ss_pred HHHHHHHCCCCE--EEECCCCCCHHHHHH
Q ss_conf 999999759969--999289874689999
Q gi|254780601|r 29 AILNPDLREKDV--LVSAQTGSGKTVAFG 55 (573)
Q Consensus 29 ~~ip~~l~g~d~--i~~a~TGsGKT~af~ 55 (573)
+++..+-+|+-| ++.+..+|=+|+-++
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l 369 (1230)
T KOG0952 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKL 369 (1230)
T ss_pred HHHHHHHCCCEEEEEEECCHHHHHHHHHH
T ss_conf 99999974985999996574899999999
No 153
>KOG0391 consensus
Probab=97.89 E-value=0.00013 Score=50.29 Aligned_cols=93 Identities=22% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 5641677513023345655555422666301048999999999986654488--14998538650014578873389705
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR--ARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~--~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
+..+++||..--+..+-|-.+|..+||--.-|.|.-.-++|...|++|.... +.++.+|---.-||++-+-|.||-||
T Consensus 1275 eghRvLIfTQMtkmLDVLEqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 58548851688999999999985425689984487538899999997367871699998526786420134674589845
Q ss_pred CCCCH------HHHHHHHCCC
Q ss_conf 88747------8999860301
Q gi|254780601|r 321 LSSNP------ENLLHRSGRT 335 (573)
Q Consensus 321 ~P~~~------~~yvHR~GRt 335 (573)
--.++ .+.-||||+|
T Consensus 1355 sDwNPtMDaQaQDrChRIGqt 1375 (1958)
T KOG0391 1355 SDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred CCCCCHHHHHHHHHHHHHCCC
T ss_conf 888801326889888874573
No 154
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.88 E-value=0.00092 Score=44.49 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=89.8
Q ss_pred HHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 89999999787987--898999999999759969999289874689--99999999861042122556882799984998
Q gi|254780601|r 9 QVIGEALSERGYVN--LTSVQEAILNPDLREKDVLVSAQTGSGKTV--AFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 9 ~~l~~~l~~~g~~~--pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~--af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
+.+...|..+ |.. ...-|+.|.-..+..+=.|+....|||||. +.+|.++..+... ..++....+||-
T Consensus 133 ~~~~~~L~~l-f~~~~~~dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~-------~~l~I~LaAPTG 204 (607)
T PRK10875 133 ALLAQTLDAL-FPPGDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADG-------ERCRIRLAAPTG 204 (607)
T ss_pred HHHHHHHHHH-CCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-------CCCEEEEECCHH
T ss_conf 9999999985-79988851899999998755778996799987788999999999996458-------997089988228
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHH------HHCCCCCCCCCEEEEEECCC
Q ss_conf 999999999999854469879999889987999996128975998223101332------10001224643189996131
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH------IRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~------~~~~~l~l~~v~~lVlDEaD 158 (573)
--|....+.+..-...+.+. ..+...+-. =..|=-||+-. ...+.-+.=....+|+|||=
T Consensus 205 KAAaRL~Esi~~~~~~l~~~----------~~~~~~~p~----~a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEAS 270 (607)
T PRK10875 205 KAAARLTESLGKALRQLPLT----------DEQKKRIPE----DASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS 270 (607)
T ss_pred HHHHHHHHHHHHHHHHCCCC----------HHHHHCCCC----CCEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCH
T ss_conf 99999999998787534766----------566633765----5665897529678987656577999988989990733
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 1001001235788875214334225631
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFS 186 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~S 186 (573)
|+|+ +-+..+++.+|...+.+|..
T Consensus 271 -MVDl---~Lm~~LL~Alp~~aRLILvG 294 (607)
T PRK10875 271 -MIDL---PMMSRLIDALPDHARVIFLG 294 (607)
T ss_pred -HHHH---HHHHHHHHHCCCCCEEEEEC
T ss_conf -6659---99999998289998899965
No 155
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=97.83 E-value=0.00048 Score=46.40 Aligned_cols=145 Identities=21% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 987898999999999759969999289874689--999999998610421225568827999849989999999999998
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV--AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~--af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
...-+.=|..+.-.+|.+.=.++....|||||. +++|-+|..-..... ...++.-+.+||---|.-..+.+.+-
T Consensus 225 ~~~~~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G----~~~~~I~l~APTGKAa~RL~esl~~~ 300 (753)
T TIGR01447 225 GRKVTDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQG----KPRLRIALAAPTGKAAARLAESLRKA 300 (753)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC----CCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 43113799999999860876899879889778999999999999898649----97404788668447999999999988
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHH--CCCC-----CCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 5446987999988998799999612897599822310133210--0012-----24643189996131100100123578
Q gi|254780601|r 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR--GKGL-----NISHLKAVVLDEADEMLDLGFRDDIE 170 (573)
Q Consensus 98 ~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~--~~~l-----~l~~v~~lVlDEaD~ml~~gf~~~i~ 170 (573)
...+.+. |+.++... .-...+-+.|=-||+--.. ...+ +-=.+..||+|||= |.|+ +-+.
T Consensus 301 ~~~L~~~------~~aid~~~---~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaS-MVdl---~lm~ 367 (753)
T TIGR01447 301 VKKLAAE------NMAIDEDL---IAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEAS-MVDL---PLMA 367 (753)
T ss_pred HHHHHHH------CCCCCHHH---HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCH-HCCH---HHHH
T ss_conf 6322342------36658798---54872045688886166147876776777788985527870600-2267---9999
Q ss_pred HHHHHCCCCCC
Q ss_conf 88752143342
Q gi|254780601|r 171 FILDSSPKKRR 181 (573)
Q Consensus 171 ~i~~~~p~~~q 181 (573)
.+++.+|+..+
T Consensus 368 kL~~A~~~~~k 378 (753)
T TIGR01447 368 KLLKALPPNTK 378 (753)
T ss_pred HHHHHCCCCCC
T ss_conf 99972263001
No 156
>KOG1802 consensus
Probab=97.65 E-value=0.0014 Score=43.20 Aligned_cols=89 Identities=22% Similarity=0.246 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 77998899999997879878989999999997599699992898746899999999986104212255688279998499
Q gi|254780601|r 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 (573)
Q Consensus 4 f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT 83 (573)
|..||. .+..-|+.++..=|..|....|+..=.++|.|.|||||..-.--+. ++... .+-.+||.+|+
T Consensus 396 k~~LP~----~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVy-hl~~~-------~~~~VLvcApS 463 (935)
T KOG1802 396 KKLLPR----RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-------HAGPVLVCAPS 463 (935)
T ss_pred CCCCCH----HHCCCCCHHHCHHHHHHHHHHHCCCCEEEECCCCCCCEEHHHHHHH-HHHHH-------CCCCEEEECCC
T ss_conf 146844----3247896122467899999997598515546999883311689999-99985-------28956998165
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999999999999854469879999
Q gi|254780601|r 84 RELAVQVGRELEWLYAKTGVVVAVC 108 (573)
Q Consensus 84 rELa~Qv~~~~~~l~~~~~~~v~~~ 108 (573)
.--..|+++-+.. .|++|+-+
T Consensus 464 NiAVDqLaeKIh~----tgLKVvRl 484 (935)
T KOG1802 464 NIAVDQLAEKIHK----TGLKVVRL 484 (935)
T ss_pred CHHHHHHHHHHHH----CCCEEEEE
T ss_conf 0028999999986----18547640
No 157
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.65 E-value=0.0011 Score=44.02 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=86.0
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCC-CCCCCCCCCEEEEEC-CCHHHHHHH
Q ss_conf 99787987898999999999759969999289874689--99999999861042-122556882799984-998999999
Q gi|254780601|r 15 LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV--AFGLALASTLLAEN-DRFSPASAPLALAIA-PTRELAVQV 90 (573)
Q Consensus 15 l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~--af~lp~l~~l~~~~-~~~~~~~~~~~lil~-PTrELa~Qv 90 (573)
+++.+=......|++||..+.+.|=+|+..-.|||||. =+.+-+.+.+.... ....-.+.-+-++|| ||---|.|.
T Consensus 343 ve~~~~~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl 422 (769)
T TIGR01448 343 VEKKLRLKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL 422 (769)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC
T ss_conf 68750677068899999998609489985778886168999999999871687755312456776488737743788851
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECCCCCCCCHHHHH-
Q ss_conf 999999854469879999889987999996128975998223101332100-012246431899961311001001235-
Q gi|254780601|r 91 GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDD- 168 (573)
Q Consensus 91 ~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~-~~l~l~~v~~lVlDEaD~ml~~gf~~~- 168 (573)
..-+|....+|+ +-|-.+.+ +.-.. ...+--+.+++|+||.=+| |+
T Consensus 423 -------~E~TG~~a~TIH---------RLlG~~~~----------~~~~~k~~~~~~~~DL~IvDE~SM~------Dt~ 470 (769)
T TIGR01448 423 -------AEVTGLEALTIH---------RLLGYGSD----------TKSENKNLEDPIDADLLIVDESSMV------DTW 470 (769)
T ss_pred -------CCCCCCHHHHHH---------HHHCCCCC----------CCCCCHHHCCCCCCCEEEEECCCHH------HHH
T ss_conf -------100262123477---------86368988----------8732110113478776998146218------899
Q ss_pred -HHHHHHHCCCCCCEEEEECC
Q ss_conf -78887521433422563111
Q gi|254780601|r 169 -IEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 169 -i~~i~~~~p~~~q~~l~SAT 188 (573)
+..+|..+|.+.+.+|..=+
T Consensus 471 L~~~lL~a~P~~a~lllVGD~ 491 (769)
T TIGR01448 471 LASSLLAAVPDHARLLLVGDA 491 (769)
T ss_pred HHHHHHHHCCCCCEEEEECCC
T ss_conf 999998617977779888376
No 158
>KOG0921 consensus
Probab=97.61 E-value=0.0069 Score=38.62 Aligned_cols=303 Identities=20% Similarity=0.282 Sum_probs=149.4
Q ss_pred HHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-HHHCCCEEEE
Q ss_conf 9999975996-9999289874689999999998610421225568827999849989999999999998-5446987999
Q gi|254780601|r 30 ILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAV 107 (573)
Q Consensus 30 ~ip~~l~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l-~~~~~~~v~~ 107 (573)
-|-.+.+..| +++...||+|||--|.--||+.+..+..-.. --|.+--|||--|+-+++.+.+= +...+-.+
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~----~na~v~qprrisaisiaerva~er~e~~g~tv-- 458 (1282)
T KOG0921 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGAS----FNAVVSQPRRISAISLAERVANERGEEVGETC-- 458 (1282)
T ss_pred HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC----CCCEECCCCCCCHHHHHHHHHHHHHHHHCCCC--
T ss_conf 999987507504676023666314788999998762254420----02100265421117788988776677644532--
Q ss_pred EECCCCHHHHHHHHCC-CCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC--HHHH-----------HHHHHH
Q ss_conf 9889987999996128-9759982231013321000122464318999613110010--0123-----------578887
Q gi|254780601|r 108 CIGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--GFRD-----------DIEFIL 173 (573)
Q Consensus 108 ~~gg~~~~~q~~~l~~-~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~--gf~~-----------~i~~i~ 173 (573)
|.+... ..+.-. ---|..||-|-++.+++.+ +-.+..+++||.-+ .+. -|.- |+..++
T Consensus 459 ---gy~vRf-~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deihe-rdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921 459 ---GYNVRF-DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHE-RDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred ---CCCCCC-CCCCCCCCCCEEEECCCHHHHHHHHC---CCCCCCCCCHHHHH-HCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf ---333221-22455543302320210555554401---24544234203333-02304789999876412311455532
Q ss_pred -----------HHCCCCCCEEEEECCCCCCCHHHHHH-------------------HCCC--CCCCCCCCCCC-------
Q ss_conf -----------52143342256311112220011112-------------------1012--33332333232-------
Q gi|254780601|r 174 -----------DSSPKKRRMLMFSATISPAITTLAKN-------------------YQKD--AVRVNIASENR------- 214 (573)
Q Consensus 174 -----------~~~p~~~q~~l~SAT~~~~i~~l~~~-------------------~~~~--p~~i~~~~~~~------- 214 (573)
..+..-.|..+.++|+|-. .+... ++.+ +....-+.++.
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred HHCCCCHHHHHHHHCCCCCEEECCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCCHH
T ss_conf 221234045555521464135316655289--999998630222057876731011034556750121134445544721
Q ss_pred CCCCCCHHCCCCCCCHH----HHHHHHCCCC-CCCCEEEEECCCHHHHHHHHHHHHHC-------CCCCCCCCCCCCHHH
Q ss_conf 56652000000000002----4554200102-35641677513023345655555422-------666301048999999
Q gi|254780601|r 215 QHSDIDYRAVLVALSDR----DNAIVNILRY-HGAKNAIVFCSTRASVSRFTKVLAEH-------LFQVVALSGELSQQE 282 (573)
Q Consensus 215 ~~~~i~~~~~~v~~~~k----~~~l~~ll~~-~~~~~~ivF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~~~q~~ 282 (573)
....+..-.+..++++. .++|...+.. .-+..++||---....-.|..+|... .+...++|+.+.-.+
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~e 688 (1282)
T KOG0921 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQE 688 (1282)
T ss_pred HCCHHHHHHHCCHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHCCCHH
T ss_conf 05124456522201025257899987543034776402330474477664331344433321210034665022014476
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC------------------CHHHHHHHHCCCCCCCCCCEE
Q ss_conf 99998665448814998538650014578873389705887------------------478999860301037888602
Q gi|254780601|r 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS------------------NPENLLHRSGRTGRAGRKGMS 344 (573)
Q Consensus 283 R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~------------------~~~~yvHR~GRtgRag~~G~a 344 (573)
..++.+..-.|..++++.|..+.--|-|.++..||--+.-. +...-++|.||.|| -+.|.|
T Consensus 689 qrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~gr-vR~G~~ 767 (1282)
T KOG0921 689 QRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGR-VRPGFC 767 (1282)
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHCCCCCE-ECCCCC
T ss_conf 6413675545565401345336676420450688752001111210443203445522664306764266741-356623
Q ss_pred EEEEC
Q ss_conf 56405
Q gi|254780601|r 345 VFVIP 349 (573)
Q Consensus 345 i~l~~ 349 (573)
..+.+
T Consensus 768 f~lcs 772 (1282)
T KOG0921 768 FHLCS 772 (1282)
T ss_pred CCCCH
T ss_conf 12107
No 159
>KOG0391 consensus
Probab=97.53 E-value=0.00061 Score=45.67 Aligned_cols=139 Identities=23% Similarity=0.365 Sum_probs=81.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCC--------------------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999787987898999999999759--------------------9699992898746899999999986104212255
Q gi|254780601|r 12 GEALSERGYVNLTSVQEAILNPDLRE--------------------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71 (573)
Q Consensus 12 ~~~l~~~g~~~pt~iQ~~~ip~~l~g--------------------~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~ 71 (573)
..++.-.||+.-|..=.--+|.+|.| -|=|..-.-|-|||.- .|.+|.+|.++...++
T Consensus 589 ae~~qpKgytl~tTqVktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnWG- 666 (1958)
T KOG0391 589 AEAIQPKGYTLVTTQVKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNWG- 666 (1958)
T ss_pred HHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCHHH-HHHHHHHHHHCCCCCC-
T ss_conf 98617665156654413675388877788888751799999987334432223314651457-9999999875045778-
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH--C-CCCEEEEECCCCHH-HHHHCCCCCCC
Q ss_conf 68827999849989999999999998544698799998899879999961--2-89759982231013-32100012246
Q gi|254780601|r 72 ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL--Q-NGAHIVVGTPGRLC-DHIRGKGLNIS 147 (573)
Q Consensus 72 ~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l--~-~~~~iiv~TPgrl~-d~~~~~~l~l~ 147 (573)
|. ||+|||--+-.= .-+|+++| .+++|.+.||...-.+..+.= + +.-||+|..=--+. || ..++=.
T Consensus 667 ---PH-LIVVpTsviLnW-EMElKRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~---~AFkrk 736 (1958)
T KOG0391 667 ---PH-LIVVPTSVILNW-EMELKRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL---TAFKRK 736 (1958)
T ss_pred ---CC-EEEEECHHHHHH-HHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH---HHHHHH
T ss_conf ---73-698513221133-67886527--753576521778888887514468880488631068887377---888764
Q ss_pred CCEEEEEECCCCCCC
Q ss_conf 431899961311001
Q gi|254780601|r 148 HLKAVVLDEADEMLD 162 (573)
Q Consensus 148 ~v~~lVlDEaD~ml~ 162 (573)
+-+|+|||||...=+
T Consensus 737 rWqyLvLDEaqnIKn 751 (1958)
T KOG0391 737 RWQYLVLDEAQNIKN 751 (1958)
T ss_pred CCCEEEHHHHHHHCC
T ss_conf 112232145554230
No 160
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.51 E-value=0.0031 Score=40.95 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=66.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCCCHH
Q ss_conf 99699992898746899999999986104212255688279998499899999999999985446987999-98899879
Q gi|254780601|r 37 EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~-~~gg~~~~ 115 (573)
|+=.++-...|+|||--.+--++..... +..+.|||+|||-.+.-+++.+ +...++... .+.+
T Consensus 2 g~~t~ld~HPGaGKTr~vLP~~v~~~i~--------~~lRtlVLaPTRVV~~Em~eAL----~g~~vr~~t~a~~~---- 65 (146)
T pfam07652 2 GTLTVLDLHPGAGKTRKVLPELVRECID--------RRLRTLVLAPTRVVLAEMEEAL----RGLPIRYHTPAVSS---- 65 (146)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHH----CCCCCEEECHHHHC----
T ss_conf 8327985389999702248999999997--------2861899772799999999997----58994675234313----
Q ss_pred HHHHHHCCCCEEEEECC-CCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHH--HHHHCC--CCCCEEEEECC
Q ss_conf 99996128975998223-101332100012246431899961311001001235--788--875214--33422563111
Q gi|254780601|r 116 RERRDLQNGAHIVVGTP-GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEF--ILDSSP--KKRRMLMFSAT 188 (573)
Q Consensus 116 ~q~~~l~~~~~iiv~TP-grl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~--i~~~~p--~~~q~~l~SAT 188 (573)
...+-+||-... .-+...+-. .....+..++|+|||- |.|. |-. ++...- .+...++.|||
T Consensus 66 -----~~~~~~ivdvmCHAT~t~r~l~-~~~~~ny~viIMDE~H------~~DP~SIAarG~~~~~~~~g~~a~i~mTAT 133 (146)
T pfam07652 66 -----EHTGREIVDVMCHATFTQRLLS-PVRVPNYEVIIMDEAH------FTDPASIAARGYISTLVELGEAAAIFMTAT 133 (146)
T ss_pred -----CCCCCCEEEEECHHHHHHHHHC-CCCCCCEEEEEEECCC------CCCHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf -----6688841889715988889736-8885644799985122------389899998899998854386579999568
Q ss_pred CCCC
Q ss_conf 1222
Q gi|254780601|r 189 ISPA 192 (573)
Q Consensus 189 ~~~~ 192 (573)
=|..
T Consensus 134 PPG~ 137 (146)
T pfam07652 134 PPGT 137 (146)
T ss_pred CCCC
T ss_conf 9998
No 161
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=97.50 E-value=0.0054 Score=39.29 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH-------HH
Q ss_conf 98789899999999975996999928987468999999999861042122556882799984998999999-------99
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV-------GR 92 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv-------~~ 92 (573)
++--|+-|+.++..+++..=+++..++|||||+--+--.++.+... +. -+.+|.=|+-+....+ .+
T Consensus 2 I~P~~~~Q~~~~~~l~~~~iv~~~GpAGtGKT~la~~~al~~l~~~--~~-----~kiii~Rp~v~~g~~iGfLPG~~~e 74 (205)
T pfam02562 2 IKPKTLGQKRYVEAIRKNDIVFGIGPAGTGKTYLAVAAAVDALKDG--KV-----KRIILTRPAVEAGEKLGFLPGDLEE 74 (205)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHC--CC-----CEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 8789888999999971798079989998609999999999999718--94-----3799975771257754558897899
Q ss_pred HHHHHHHH-C-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 99998544-6-987999988998799999612897599822310133210001224643189996131100100123578
Q gi|254780601|r 93 ELEWLYAK-T-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170 (573)
Q Consensus 93 ~~~~l~~~-~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~ 170 (573)
-+.-+... . .+.- ++| ..+.+.|.+.-.|-+... .+++-.+ +++ .++|+|||-.|- .+++.
T Consensus 75 K~~p~~~p~~d~l~~--~~~----~~~~~~l~~~~~Ie~~pl----~~iRGrT--f~n-~~iIvDEaQN~t----~~~lk 137 (205)
T pfam02562 75 KVDPYLRPLYDALYD--MLG----AEKVEKLIERGVIEIAPL----AYMRGRT--LND-AFIILDEAQNTT----PEQMK 137 (205)
T ss_pred HHHHHHHHHHHHHHH--HHC----HHHHHHHHHCCCEEECCH----HHHCCCC--CCC-CEEEEECHHCCC----HHHHH
T ss_conf 999999999999998--728----999999997597566146----7655476--256-889997221399----99999
Q ss_pred HHHHHCCCCCCEEEEE
Q ss_conf 8875214334225631
Q gi|254780601|r 171 FILDSSPKKRRMLMFS 186 (573)
Q Consensus 171 ~i~~~~p~~~q~~l~S 186 (573)
.|+..+-++...++..
T Consensus 138 ~ilTRiG~~SK~vi~G 153 (205)
T pfam02562 138 MFLTRIGFNSKMVVTG 153 (205)
T ss_pred HHHHHCCCCCEEEEEC
T ss_conf 9984217996899947
No 162
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=97.45 E-value=0.00086 Score=44.70 Aligned_cols=114 Identities=22% Similarity=0.261 Sum_probs=60.3
Q ss_pred HHHHHHHHC-C---CCEEEECCCCCCHHHH--HHHHHHHHHHCCCCCCCCCCCC-EEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999975-9---9699992898746899--9999999861042122556882-7999849989999999999998544
Q gi|254780601|r 28 EAILNPDLR-E---KDVLVSAQTGSGKTVA--FGLALASTLLAENDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAK 100 (573)
Q Consensus 28 ~~~ip~~l~-g---~d~i~~a~TGsGKT~a--f~lp~l~~l~~~~~~~~~~~~~-~~lil~PTrELa~Qv~~~~~~l~~~ 100 (573)
+.++.++|. | .||++-.+||||||+. |+.=.|+..... .... .+.+=+-...+-- -|..+..|...
T Consensus 30 ~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~------~d~~D~~~~~~NC~~~~T-~y~~~~~L~~~ 102 (383)
T TIGR02928 30 AKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAED------RDVRDVSTVYINCQILDT-SYQVLVELANQ 102 (383)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC------CCCCCEEEEEECCCCCCC-HHHHHHHHHHH
T ss_conf 99988750674898725887888987889999999999998622------699715899977854684-69999999998
Q ss_pred C-----CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 6-----9879999889987999996128975998223101332100012246431899961311001001235
Q gi|254780601|r 101 T-----GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 (573)
Q Consensus 101 ~-----~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~ 168 (573)
+ +..| -.-|.|..+-.+.| ++-|++ .....=.+||||.|.|+ -+=.+|
T Consensus 103 ln~~~~~~~v--P~tG~s~~~~~~~l--------------~~~l~~---~~~~~~~ivLDEiD~Lv-~~~~d~ 155 (383)
T TIGR02928 103 LNRRGSGEEV--PTTGLSTSEVFREL--------------YKELNR---ERGDSLIIVLDEIDKLV-RKDDDD 155 (383)
T ss_pred HCCCCCCCCC--CCCCCCHHHHHHHH--------------HHHHHH---HCCCEEEEEECCCCHHH-CCCCCC
T ss_conf 5157788889--88778789999999--------------999832---01887999862310221-588888
No 163
>KOG1002 consensus
Probab=97.36 E-value=0.00043 Score=46.68 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=77.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC-CEEE-EEECCCCCCCCCCCCCCEEEEE
Q ss_conf 3564167751302334565555542266630104899999999998665448-8149-9853865001457887338970
Q gi|254780601|r 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG-RARV-CIATDVAARGIDLPDLELVIHA 319 (573)
Q Consensus 242 ~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g-~~~v-LV~TDvaaRGiDi~~v~~Vin~ 319 (573)
...-++|||..--...+-+.-.|.+.||+|..|-|.|+..+|..+++.|++. .++| ||+--...--|++-..+||+.+
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECHHCEEEEE
T ss_conf 55254204987788999999886126733899636778677899999741288817999986058468631000025762
Q ss_pred CCCCCHH------HHHHHHCCCCCCCCCCEEEEEECHH
Q ss_conf 5887478------9998603010378886025640599
Q gi|254780601|r 320 ELSSNPE------NLLHRSGRTGRAGRKGMSVFVIPQN 351 (573)
Q Consensus 320 d~P~~~~------~yvHR~GRtgRag~~G~ai~l~~~~ 351 (573)
|.=.++. +-|||||. -+.=..+.|+-++
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ----~rPvkvvrf~iEn 749 (791)
T KOG1002 716 DPWWNPAVEWQAQDRIHRIGQ----YRPVKVVRFCIEN 749 (791)
T ss_pred CCCCCHHHHHHHHHHHHHHCC----CCCEEEEEEEHHC
T ss_conf 664367777554446776047----5652688863012
No 164
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0061 Score=38.95 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=40.2
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 9999289874689999-9999986104212255688279998499-8999999999999854469879999889987999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFG-LALASTLLAENDRFSPASAPLALAIAPT-RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~-lp~l~~l~~~~~~~~~~~~~~~lil~PT-rELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+....|||+|||..-+ |.....+.... + ..--+||-+=| |--| .++++.|+.-+++-+..++...++...
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~-k----~~~V~lit~DtyRigA---veQLktya~il~vp~~v~~~~~dl~~~ 248 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDD-K----SLNIKIITIDNYRIGA---KKQIQTYGDIMGIPVKAIESFKDLKEE 248 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC-C----CCCEEEEEECCCCHHH---HHHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 9998998875787999999999986267-6----7737999807875889---999999999978806985788999999
Q ss_pred HHHHCCCCEEEEECCCCH
Q ss_conf 996128975998223101
Q gi|254780601|r 118 RRDLQNGAHIVVGTPGRL 135 (573)
Q Consensus 118 ~~~l~~~~~iiv~TPgrl 135 (573)
+..++..--|+|=|+||-
T Consensus 249 l~~~~~~D~IlIDTAGrs 266 (388)
T PRK12723 249 ITQSKDFDLVLIDTIGKS 266 (388)
T ss_pred HHHHCCCCEEEEECCCCC
T ss_conf 997249999999589988
No 165
>KOG1805 consensus
Probab=97.24 E-value=0.0037 Score=40.41 Aligned_cols=125 Identities=23% Similarity=0.255 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 798789899999999975996-9999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 19 GYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~~l~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
-+..+..-|++|+-.+|.-+| .++..-.|||||-. |-.+-+++.... -.+|+.+-|.-- |.+.+.+|
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt--I~~LIkiL~~~g-------kkVLLtsyThsA---VDNILiKL 733 (1100)
T KOG1805 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT--ISLLIKILVALG-------KKVLLTSYTHSA---VDNILIKL 733 (1100)
T ss_pred HHHHCCHHHHHHHHHHHHCCCHHEEECCCCCCCHHH--HHHHHHHHHHCC-------CEEEEEEHHHHH---HHHHHHHH
T ss_conf 875318899999999873033220326998981225--999999999738-------818998505678---89999987
Q ss_pred HHHCCCEEEEEEC-CCCHHHHHH--------------HHC---CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 5446987999988-998799999--------------612---8975998223101332100012246431899961311
Q gi|254780601|r 98 YAKTGVVVAVCIG-GVSVHRERR--------------DLQ---NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 98 ~~~~~~~v~~~~g-g~~~~~q~~--------------~l~---~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
.+. ++.++-+ | +..+.++.+ .|+ +.+.||.+|---+-+- .+...+-.|.|+|||-+
T Consensus 734 ~~~-~i~~lRL-G~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~R~FD~cIiDEASQ 807 (1100)
T KOG1805 734 KGF-GIYILRL-GSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVNRQFDYCIIDEASQ 807 (1100)
T ss_pred HCC-CCCEEEC-CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCH----HHHCCCCCEEEECCCCC
T ss_conf 506-7110344-87222446899871234454533999999728976799971578865----55214267899865111
Q ss_pred CC
Q ss_conf 00
Q gi|254780601|r 160 ML 161 (573)
Q Consensus 160 ml 161 (573)
++
T Consensus 808 I~ 809 (1100)
T KOG1805 808 IL 809 (1100)
T ss_pred CC
T ss_conf 14
No 166
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.19 E-value=0.0071 Score=38.53 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=52.4
Q ss_pred CEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC--CCCCEEEE-----------EECHHHHHHHHHHH
Q ss_conf 814998538650014578873389705887478999860301037--88860256-----------40599999999999
Q gi|254780601|r 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVF-----------VIPQNMQRRAERLF 360 (573)
Q Consensus 294 ~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa--g~~G~ai~-----------l~~~~e~~~~~~i~ 360 (573)
..+++.+--.+-.|-|=|+|=.++-.--..+..+=.+-+||-=|- +..|.-++ ++..+|...++.+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred CCEEEEEHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHCCCEEEEECCCCCEECCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 50012226577613789983689986488760478888634515323456660011214543269981631799999999
Q ss_pred HHHH
Q ss_conf 9850
Q gi|254780601|r 361 REAN 364 (573)
Q Consensus 361 ~~~~ 364 (573)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
T ss_conf 9987
No 167
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.13 E-value=0.0035 Score=40.58 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=9.8
Q ss_pred CCCEEEEECCCCHH
Q ss_conf 89759982231013
Q gi|254780601|r 123 NGAHIVVGTPGRLC 136 (573)
Q Consensus 123 ~~~~iiv~TPgrl~ 136 (573)
.++..||=+|-|=+
T Consensus 83 ~~p~aLILvPTREL 96 (574)
T PRK04537 83 EDPRALILAPTREL 96 (574)
T ss_pred CCCEEEEECCCHHH
T ss_conf 99619997798999
No 168
>KOG1132 consensus
Probab=97.06 E-value=0.012 Score=36.92 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHH---HHHHHHCC---------C-----------------CC
Q ss_conf 78989999999997----5996999928987468999999---99986104---------2-----------------12
Q gi|254780601|r 22 NLTSVQEAILNPDL----REKDVLVSAQTGSGKTVAFGLA---LASTLLAE---------N-----------------DR 68 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp---~l~~l~~~---------~-----------------~~ 68 (573)
+|.|.|..-+..+| ...+.++.|||||||||+-+-. -.+++... . +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 86458999999999998876312020889898149999989999998631253432123111466778777888710220
Q ss_pred CCC----CCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 255----6882799984998999999999999854
Q gi|254780601|r 69 FSP----ASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 69 ~~~----~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
..+ ..-|...+=+=|+---.||.+++++...
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 67532236885489953308899999999860467
No 169
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.02 E-value=0.0069 Score=38.62 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=22.3
Q ss_pred CCCCCCCCEEEEECCCCCHHHHH-HHHCCCCCCCCCCEEEEEECHH-HHHHHHHHHHHHHC
Q ss_conf 14578873389705887478999-8603010378886025640599-99999999998506
Q gi|254780601|r 307 GIDLPDLELVIHAELSSNPENLL-HRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANV 365 (573)
Q Consensus 307 GiDi~~v~~Vin~d~P~~~~~yv-HR~GRtgRag~~G~ai~l~~~~-e~~~~~~i~~~~~~ 365 (573)
..-.+.|.+.++|--......++ +-++ .+....+|.|+... ....+....+..+.
T Consensus 214 ~~~~~~i~q~~~~v~~~~k~~~L~~ll~----~~~~~~~iIF~~tk~~a~~l~~~L~~~g~ 270 (457)
T PRK10590 214 NTASEQVTQHVHFVDKKRKRELLSQMIG----KGNWQQVLVFTRTKHGANHLAEQLNKDGI 270 (457)
T ss_pred CCCCCCEEEEEEEECHHHHHHHHHHHHH----HCCCCCEEEEECHHHHHHHHHHHHHHCCC
T ss_conf 6656130489999566789999999986----15866335884119999999999855699
No 170
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.02 E-value=0.0085 Score=38.00 Aligned_cols=52 Identities=10% Similarity=-0.070 Sum_probs=21.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH-HHHHHHHHHHHH
Q ss_conf 7887338970588747899986030103788860256405999-999999999850
Q gi|254780601|r 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-QRRAERLFREAN 364 (573)
Q Consensus 310 i~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e-~~~~~~i~~~~~ 364 (573)
.+.+.+.+-.--+.+...++.++=.. -....+|.|+...+ ...+....+..+
T Consensus 214 ~~~I~q~~~~v~~~~K~~~L~~ll~~---~~~~~~IIFcntk~~v~~l~~~L~~~g 266 (459)
T PRK11776 214 DSTIEQRFYEVDPDERLPALQRLLLH---YRPESCVVFCNTKKECQEVADALNAQG 266 (459)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHH---CCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 98637999997718789999999973---687660376174899999999998679
No 171
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.99 E-value=0.028 Score=34.54 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=51.1
Q ss_pred HHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE-EECCCHHHHHHHHHHH-HHHHHHCCCE
Q ss_conf 99999759---96999928987468999999999861042122556882799-9849989999999999-9985446987
Q gi|254780601|r 30 ILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL-AIAPTRELAVQVGREL-EWLYAKTGVV 104 (573)
Q Consensus 30 ~ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l-il~PTrELa~Qv~~~~-~~l~~~~~~~ 104 (573)
++.+++.| .++++..+||||||++- --++..+.... ...+.+ |=|-.---..||+..+ ..|. +..
T Consensus 45 ~l~~~l~g~~~~n~~I~G~pGTGKT~~v-k~v~~~l~~~~------~~~~~vyINc~~~~t~~~i~~~i~~~L~---~~~ 114 (394)
T PRK00411 45 ALRPALRGSRPSNVLILGPPGTGKTTTV-KKVFEELEEAA------LKVVYVYINCQIDRTRYAILSEIARSLF---GHP 114 (394)
T ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHH-HHHHHHHHHHC------CCCEEEEEECCCCCCHHHHHHHHHHHHC---CCC
T ss_conf 9999975999984799889999899999-99999999746------8965999969668989999999999956---998
Q ss_pred EEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999988998799999612897599822310133210001224643189996131100100123578887
Q gi|254780601|r 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 (573)
Q Consensus 105 v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~ 173 (573)
+ + .-|.+..+-...+ .+++. .-+..-.+||||+|.+++-.-.+-+..++
T Consensus 115 ~-p-~~G~s~~~~~~~l--------------~~~l~----~~~~~~ivvLDEiD~L~~~~~~~vLY~L~ 163 (394)
T PRK00411 115 P-P-SSGLSFDELFDKI--------------AEYLD----ERDRVLIVALDDINYLVEKEGNDVLYSLL 163 (394)
T ss_pred C-C-CCCCCHHHHHHHH--------------HHHHH----CCCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 9-8-7787899999999--------------99861----66975899996554020366508999998
No 172
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.98 E-value=0.034 Score=33.98 Aligned_cols=308 Identities=20% Similarity=0.140 Sum_probs=148.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 96999928987468999999999861042122556882799984998999999999999854469879999889987999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+-=++.--||||||+.-.--. +.+. .. ...|.++++|=.++|-.|+.+++.+++....... .-.|...=
T Consensus 274 ~~G~IWHtqGSGKTltm~~~A-~~l~-~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLL-EL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL 342 (962)
T ss_pred CCEEEEECCCCCHHHHHHHHH-HHHH-HC-----CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHH
T ss_conf 723898406983789999999-9998-36-----5999699996728899999999999887632044----44579999
Q ss_pred HHHHCCCC-EEEEECCCCHHHHHHCC-CCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC------
Q ss_conf 99612897-59982231013321000-12246-43189996131100100123578887521433422563111------
Q gi|254780601|r 118 RRDLQNGA-HIVVGTPGRLCDHIRGK-GLNIS-HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT------ 188 (573)
Q Consensus 118 ~~~l~~~~-~iiv~TPgrl~d~~~~~-~l~l~-~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT------ 188 (573)
.+.|+++. -|+|+|=.++-+.+... ...+. +=-.+++|||-+--. |+. -..+-..+|+ ...+-|+-|
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G~~--~~~~~~~~~~-a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-GEL--AKLLKKALKK-AIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC-HHH--HHHHHHHHCC-CEEEEEECCCCCCCC
T ss_conf 999865898489997102643333332000478767999864010356-078--9999987036-708975178564022
Q ss_pred ----------------CCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHCC---------------CCC---------
Q ss_conf ----------------1222001111210123333233-32325665200000---------------000---------
Q gi|254780601|r 189 ----------------ISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAV---------------LVA--------- 227 (573)
Q Consensus 189 ----------------~~~~i~~l~~~~~~~p~~i~~~-~~~~~~~~i~~~~~---------------~v~--------- 227 (573)
+.+.|.+.+- + |+..... ..........+... .+.
T Consensus 419 ~~tt~~~fg~ylh~Y~i~~aI~Dg~v--l--~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 494 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAV--L--PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFL 494 (962)
T ss_pred CCCHHHHHCCEEEEEECCHHHCCCCE--E--EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42035551744799865223235763--3--2584031234532001245666669998422799999999987555687
Q ss_pred ---CCHHHHHHHHC----CC-CCCCCEEEEECCCHHHHHHHHHHHHHC-------CCCCCC------CCCCC--------
Q ss_conf ---00024554200----10-235641677513023345655555422-------666301------04899--------
Q gi|254780601|r 228 ---LSDRDNAIVNI----LR-YHGAKNAIVFCSTRASVSRFTKVLAEH-------LFQVVA------LSGEL-------- 278 (573)
Q Consensus 228 ---~~~k~~~l~~l----l~-~~~~~~~ivF~~t~~~~~~l~~~L~~~-------g~~~~~------lhg~~-------- 278 (573)
+.....+...+ .. .....++++-|.++..+..+.+..... .....+ ..+.+
T Consensus 495 ~~~~~r~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 574 (962)
T COG0610 495 AMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHA 574 (962)
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 51448899999999999986115583599998416878776788877515566653005289998613223202344557
Q ss_pred -CHHHHHHHHHH--HHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC--C-CC-CEEEEEECHH
Q ss_conf -99999999866--5448814998538650014578873389705887478999860301037--8-88-6025640599
Q gi|254780601|r 279 -SQQERSNALQM--MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--G-RK-GMSVFVIPQN 351 (573)
Q Consensus 279 -~q~~R~~~~~~--fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa--g-~~-G~ai~l~~~~ 351 (573)
.+......... +++...++||.+|..==|-|.|-+ +++-.|=|--.-..++-+-||-|. + ++ |..+.|+. -
T Consensus 575 ~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L-~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-~ 652 (962)
T COG0610 575 KLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCL-NTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-L 652 (962)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCC-H
T ss_conf 77777653323212757787689997762046775420-126744554433189999886458878888957997814-6
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999985066
Q gi|254780601|r 352 MQRRAERLFREANVS 366 (573)
Q Consensus 352 e~~~~~~i~~~~~~~ 366 (573)
....-+.+.-++...
T Consensus 653 ~e~~~~Al~~y~~~~ 667 (962)
T COG0610 653 KEALKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999975135
No 173
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.92 E-value=0.0047 Score=39.74 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=4.7
Q ss_pred CEEEEECCCC
Q ss_conf 7599822310
Q gi|254780601|r 125 AHIVVGTPGR 134 (573)
Q Consensus 125 ~~iiv~TPgr 134 (573)
+.+||=+|-|
T Consensus 76 ~~~LIl~PTr 85 (417)
T PRK11192 76 PRILILTPTR 85 (417)
T ss_pred CEEEEEECHH
T ss_conf 6499994719
No 174
>KOG0344 consensus
Probab=96.91 E-value=0.038 Score=33.61 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCCEEEEECC---CCHHHH-------HHCCC--CCCCCCEEEEEECCCCCCCC
Q ss_conf 8975998223---101332-------10001--22464318999613110010
Q gi|254780601|r 123 NGAHIVVGTP---GRLCDH-------IRGKG--LNISHLKAVVLDEADEMLDL 163 (573)
Q Consensus 123 ~~~~iiv~TP---grl~d~-------~~~~~--l~l~~v~~lVlDEaD~ml~~ 163 (573)
.+-+++.|-| |+.+.+ +.... -+-..++.+|++-.-++...
T Consensus 172 ~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Q 224 (593)
T KOG0344 172 EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQ 224 (593)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf 13305886357886205655699999987520357654278884444999999
No 175
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.88 E-value=0.0086 Score=37.95 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=5.4
Q ss_pred CCEEEEECCCC
Q ss_conf 97599822310
Q gi|254780601|r 124 GAHIVVGTPGR 134 (573)
Q Consensus 124 ~~~iiv~TPgr 134 (573)
+|..||=+|-|
T Consensus 84 ~p~aLIL~PTR 94 (423)
T PRK04837 84 QPRALIMAPTR 94 (423)
T ss_pred CCEEEEEECCH
T ss_conf 86189993889
No 176
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79 E-value=0.039 Score=33.56 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf 999985446987999988998799999612897599822310
Q gi|254780601|r 93 ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134 (573)
Q Consensus 93 ~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgr 134 (573)
+++.|+.-+++-+..++...++..-+..++..--|+|=|+||
T Consensus 224 QLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dlILIDTaGr 265 (404)
T PRK06995 224 QLRIYGKILGVPVHAVKDAADLRLALAELRNKHIVLIDTVGM 265 (404)
T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999999875955999599999999999708999999809998
No 177
>pfam12340 DUF3638 Protein of unknown function (DUF3638). This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.74 E-value=0.018 Score=35.84 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHH
Q ss_conf 89899999999975---99699992898746899999999986104212255688279998499899999999999-985
Q gi|254780601|r 23 LTSVQEAILNPDLR---EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLY 98 (573)
Q Consensus 23 pt~iQ~~~ip~~l~---g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~-~l~ 98 (573)
.-|+|....-.+++ |.+.+.|.-.|-|||-. .+|++.-++.+..+ .+-+++|. .|..|....+. +|+
T Consensus 24 iR~~Q~~va~~~i~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-------Lvr~vvp~-~Ll~q~~~~L~~~lg 94 (229)
T pfam12340 24 IRPVQVDVARAMISPSSGSNSVLQLNMGEGKTSV-IVPMVAAVLADGSR-------LVRVIVPK-PLLRQMAQMLQSRLG 94 (229)
T ss_pred ECHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCEE-EHHHHHHHHCCCCC-------EEEEECCH-HHHHHHHHHHHHHHH
T ss_conf 4289999999985755788722011206996224-37889999748884-------58998268-899999999999864
Q ss_pred HHCCCEEEE--EECCCCHHH----HHHH----HCCCCEEEEECCCCHHHH-------HHCCCCC-----------CCCCE
Q ss_conf 446987999--988998799----9996----128975998223101332-------1000122-----------46431
Q gi|254780601|r 99 AKTGVVVAV--CIGGVSVHR----ERRD----LQNGAHIVVGTPGRLCDH-------IRGKGLN-----------ISHLK 150 (573)
Q Consensus 99 ~~~~~~v~~--~~gg~~~~~----q~~~----l~~~~~iiv~TPgrl~d~-------~~~~~l~-----------l~~v~ 150 (573)
.-.+-+|.. +.-..+... .+.. ....--|++++|.-++.+ +..+..+ +++.-
T Consensus 95 gll~r~v~~lPFsR~~~~~~~~~~~~~~~~~~~~~~~GIll~~PEhilSf~L~~le~l~~~~~~~a~~m~~~~~~l~~~~ 174 (229)
T pfam12340 95 GLLGREIYHLPFSRRTPTTESEINLYRQLHEECMKEGGVLLAQPEHILSFKLSGLQRLIDGKLSEARSMIKTQQWLDEHS 174 (229)
T ss_pred HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 21377059840347688998999999999999997298799680787768988689987388789999999999998448
Q ss_pred EEEEECCCCCCCC
Q ss_conf 8999613110010
Q gi|254780601|r 151 AVVLDEADEMLDL 163 (573)
Q Consensus 151 ~lVlDEaD~ml~~ 163 (573)
.-|+||.|+.|.-
T Consensus 175 rDIlDEsD~~L~~ 187 (229)
T pfam12340 175 RDILDESDENLAV 187 (229)
T ss_pred CCCEECCCCCCCC
T ss_conf 7104451034565
No 178
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.72 E-value=0.0061 Score=38.96 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=22.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHH-HHHHHCCCC----------------CCCCCCCCEEEEECCCHH
Q ss_conf 9969999289874689999999-998610421----------------225568827999849989
Q gi|254780601|r 37 EKDVLVSAQTGSGKTVAFGLAL-ASTLLAEND----------------RFSPASAPLALAIAPTRE 85 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~af~lp~-l~~l~~~~~----------------~~~~~~~~~~lil~PTrE 85 (573)
+--+|+.+|| +-||.-+-- ++.+..... ......+|++||=+|-|-
T Consensus 74 ~pqaLIL~PT---RELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL 136 (629)
T PRK11634 74 APQILVLAPT---RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRL 136 (629)
T ss_pred CCCEEEECCC---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHH
T ss_conf 9868997899---89999999999999721799779999899778999998627999999698999
No 179
>PRK09401 reverse gyrase; Reviewed
Probab=96.70 E-value=0.0036 Score=40.49 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=35.0
Q ss_pred CCEEEEECCCH---HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCC-CEEEEECC
Q ss_conf 82799984998---9999999999998544698799998899879999961289-75998223
Q gi|254780601|r 74 APLALAIAPTR---ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTP 132 (573)
Q Consensus 74 ~~~~lil~PTr---ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~-~~iiv~TP 132 (573)
++-.||.+|+. |.|..+. .+....|+++.....+.. +-+...++| .|++||.-
T Consensus 327 G~GgLifv~~~~g~e~~~~~~----~~l~~~g~~a~~~~~~~~--~~le~f~~Ge~dvLvG~a 383 (1176)
T PRK09401 327 GDGGLVFVPTDYGKEYAEELK----EYLESHGIKAEAYSGRKK--EFLEKFEEGEIDVLIGVA 383 (1176)
T ss_pred CCCEEEEEECCCCHHHHHHHH----HHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEEC
T ss_conf 895499976765889999999----999976966999605886--688897578864899970
No 180
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.68 E-value=0.05 Score=32.79 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=57.8
Q ss_pred CCCCEEEECCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 59969999289874689999-99999861042122556882799984998999999999999854469879999889987
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFG-LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~-lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~ 114 (573)
+++-+....|||-|||..-+ |...-.+..... --+||-+-|-=.+ ..++++.|+.-+++-+..++...++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-------kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el 272 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-------KVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKEL 272 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-------CEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 685799989988758879999999997532576-------0689971441152--8999999999869955996399999
Q ss_pred HHHHHHHCCCCEEEEECCCCH
Q ss_conf 999996128975998223101
Q gi|254780601|r 115 HRERRDLQNGAHIVVGTPGRL 135 (573)
Q Consensus 115 ~~q~~~l~~~~~iiv~TPgrl 135 (573)
...+..+++.=+|+|-|-||=
T Consensus 273 ~~ai~~l~~~d~ILVDTaGrs 293 (407)
T COG1419 273 AEAIEALRDCDVILVDTAGRS 293 (407)
T ss_pred HHHHHHHHCCCEEEEECCCCC
T ss_conf 999998531888999689988
No 181
>KOG0388 consensus
Probab=96.65 E-value=0.01 Score=37.48 Aligned_cols=113 Identities=20% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 59969999289874689999999998610421225568827999849989999999999998544698799998899879
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~ 115 (573)
+|-+=|..-.-|-|||.- .|.++.+|....+- .+|. ||++|.--|-.=+ +++..|+ ..+++.+..|+.+-.
T Consensus 585 qGiNGILADeMGLGKTVQ-sisvlAhLaE~~nI----wGPF-LVVtpaStL~NWa-qEisrFl--P~~k~lpywGs~~eR 655 (1185)
T KOG0388 585 QGINGILADEMGLGKTVQ-SISVLAHLAETHNI----WGPF-LVVTPASTLHNWA-QEISRFL--PSFKVLPYWGSPSER 655 (1185)
T ss_pred CCCCCEEHHHHCCCHHHH-HHHHHHHHHHHCCC----CCCE-EEEEHHHHHHHHH-HHHHHHC--CCCEEECCCCCHHHH
T ss_conf 034412133304532688-99999999874458----8763-8960278776799-9999858--654243476880266
Q ss_pred HHHHHH---------CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 999961---------28975998223101332100012246431899961311
Q gi|254780601|r 116 RERRDL---------QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 116 ~q~~~l---------~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
+.++.. ..+-||+|++=.-+. ...+.+.--+-+|.|||||.-
T Consensus 656 kiLrKfw~rKnmY~rna~fhVviTSYQlvV--tDeky~qkvKWQYMILDEAQA 706 (1185)
T KOG0388 656 KILRKFWNRKNMYRRNAPFHVVITSYQLVV--TDEKYLQKVKWQYMILDEAQA 706 (1185)
T ss_pred HHHHHHCCHHHHHCCCCCCEEEEEEEEEEE--CHHHHHHHHHHHHEEHHHHHH
T ss_conf 899974044444304799528997531111--159999863345200557877
No 182
>KOG1803 consensus
Probab=96.61 E-value=0.01 Score=37.53 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 89899999999975996-99992898746899999999986104212255688279998499899999999
Q gi|254780601|r 23 LTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGR 92 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d-~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~ 92 (573)
..+=|.+|+...++.++ .+++.|.|||||..-..-|.+.+. .. -++||.+||.+-..-|-+
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-~~--------k~VLVcaPSn~AVdNive 247 (649)
T KOG1803 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-QK--------KRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHH-CC--------CEEEEECCCHHHHHHHHH
T ss_conf 237799999997356883575579988840439999999997-28--------859997673678999998
No 183
>PTZ00110 helicase; Provisional
Probab=96.61 E-value=0.033 Score=34.06 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=52.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC----CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCCC-CCCCCC
Q ss_conf 641677513023345655555422----6663010489999999999866544881499853-----865001-457887
Q gi|254780601|r 244 AKNAIVFCSTRASVSRFTKVLAEH----LFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAARG-IDLPDL 313 (573)
Q Consensus 244 ~~~~ivF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaRG-iDi~~v 313 (573)
...+||.+.||+-+..+.+.+... ++++.++.|+.+.......+ +.| .+|+||| |++.+| +++..|
T Consensus 255 gP~aLILaPTRELA~QI~~e~~~~~~~~~ir~~~i~GG~~~~~Q~~~L---~~G-~dIvVATPGRLiDlL~~~~~~L~~v 330 (602)
T PTZ00110 255 GPIVLVLAPTRELAEQIREQALQFGRSSKLKNSVAYGGVPKRFQTYAL---RRG-VEILIACPGRLIDFLESNVTNLRRV 330 (602)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH---CCC-CCEEEECCHHHHHHHHCCCCCCCCE
T ss_conf 976999738399999999999997154785499997996879999987---169-9999979238999996499874310
Q ss_pred CEEEE
Q ss_conf 33897
Q gi|254780601|r 314 ELVIH 318 (573)
Q Consensus 314 ~~Vin 318 (573)
+++|.
T Consensus 331 ~yLVL 335 (602)
T PTZ00110 331 TYLVL 335 (602)
T ss_pred EEEEE
T ss_conf 28998
No 184
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=96.61 E-value=0.004 Score=40.18 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=47.6
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCC-CCCCEEE----EECCCCCHHHHHHHHCCCCCCC----CCCEEEEEECHHHHH--H
Q ss_conf 866544881499853865001457-8873389----7058874789998603010378----886025640599999--9
Q gi|254780601|r 287 LQMMRDGRARVCIATDVAARGIDL-PDLELVI----HAELSSNPENLLHRSGRTGRAG----RKGMSVFVIPQNMQR--R 355 (573)
Q Consensus 287 ~~~fr~g~~~vLV~TDvaaRGiDi-~~v~~Vi----n~d~P~~~~~yvHR~GRtgRag----~~G~ai~l~~~~e~~--~ 355 (573)
+....+-.-..|..-|+..+|++= .+|..|- -|=+=.|+.+|+|=+|||.|+= .+|.|+.++...+.- .
T Consensus 525 i~e~~~~~~~~L~~e~~~~~G~~~~~~~~~~~~e~~~ylvvpD~~tYiQASGRTSRl~aGGlTkGlS~Vl~dd~~~~~aL 604 (1843)
T TIGR01054 525 IEEVLKFLREALKREDVLEKGIKESEDLSLVAKEGKLYLVVPDVKTYIQASGRTSRLYAGGLTKGLSVVLVDDPEAFEAL 604 (1843)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHH
T ss_conf 99888778887752025532654103447861797259996687744246741566554232305348996547899999
Q ss_pred HHHHH-HHHHCCCCCCCCC
Q ss_conf 99999-9850664105689
Q gi|254780601|r 356 AERLF-REANVSVVWEPAP 373 (573)
Q Consensus 356 ~~~i~-~~~~~~~~~~~~P 373 (573)
.+.+. -+...++++..+-
T Consensus 605 ~kr~~lyy~~~ei~fk~i~ 623 (1843)
T TIGR01054 605 KKRLKLYYFTQEIEFKRID 623 (1843)
T ss_pred HHHHHHHHHHHCCCCCCCC
T ss_conf 9888666652013554456
No 185
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=96.56 E-value=0.0078 Score=38.23 Aligned_cols=47 Identities=28% Similarity=0.198 Sum_probs=35.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 6999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
++++.++||||||.+|++|-+... .--++|.-|-.||+..++...+.
T Consensus 1 H~lvig~tGsGKt~~~vip~ll~~-----------~~s~vv~D~Kgel~~~t~~~~~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----------CCCEEEEECCHHHHHHHHHHHHH
T ss_conf 979988999973189999999818-----------99889994878999999999998
No 186
>KOG1015 consensus
Probab=96.53 E-value=0.018 Score=35.74 Aligned_cols=117 Identities=22% Similarity=0.186 Sum_probs=89.4
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH---CC-------------------CCCCCCCCCCCHHHHHH
Q ss_conf 024554200102--3564167751302334565555542---26-------------------66301048999999999
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE---HL-------------------FQVVALSGELSQQERSN 285 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~---~g-------------------~~~~~lhg~~~q~~R~~ 285 (573)
.|+-.|..||.. .-..+.+||-.+-...+-+-.+|.. .| ..-..|.|..+..+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred CCEEHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCHHHHHH
T ss_conf 62245999999999736536876233322589999998602468654446422255552204774377548553788999
Q ss_pred HHHHHHCCC---E-EEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 986654488---1-499853865001457887338970588747899986030103788860256
Q gi|254780601|r 286 ALQMMRDGR---A-RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346 (573)
Q Consensus 286 ~~~~fr~g~---~-~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~ 346 (573)
..+.|.+-. . -+||.|-..+-||++-...-||.||...++..=++-|=|+=|+|++--++.
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHHCCCCCCEEEEEEEEECCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99984683350137999962267652002331428999455587520688999986057673140
No 187
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.49 E-value=0.0047 Score=39.74 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 6431899961311001001235788875214334225631
Q gi|254780601|r 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 (573)
Q Consensus 147 ~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~S 186 (573)
+.-+.+|+||||.|- -+....+..+++..|.....+|.+
T Consensus 124 ~~~KiiIlDEad~lt-~~Aq~aLlk~lEe~~~~~~fIl~t 162 (337)
T PRK12402 124 ADYKLILFDNAEALR-EDAQQALRRIMERYSETCRFIFST 162 (337)
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 880499970713179-999999998874088766998723
No 188
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=96.49 E-value=0.0045 Score=39.84 Aligned_cols=56 Identities=30% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 96999928987468999999999861042122556882799984998999999999999854469879999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~ 108 (573)
.++++.|+||||||..|++|-|-... .-++|+=|--||+.......++. |-.|.++
T Consensus 45 ~H~lviaptgsGKt~~~ViPnLl~~~-----------~S~VV~DpKGEl~~~Ta~~r~~~----G~~V~v~ 100 (468)
T pfam02534 45 SHVLVFAGTGSGKGVGVVIPNLLVWK-----------GSIVVLDPKGELWELTSGIREKQ----GRKVFVL 100 (468)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHCC-----------CCEEEEECCHHHHHHHHHHHHHC----CCEEEEE
T ss_conf 67999848999723424298885189-----------97899948488999999999977----9969999
No 189
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.47 E-value=0.017 Score=36.04 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=51.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCCC-CCCCCCC
Q ss_conf 4167751302334565555542----26663010489999999999866544881499853-----865001-4578873
Q gi|254780601|r 245 KNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAARG-IDLPDLE 314 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaRG-iDi~~v~ 314 (573)
.++||.|.|++-|..+.+.+.. .++.+..+.|+++.... ++.++....+|+||| |...+| +++..|.
T Consensus 160 p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q---~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~ 236 (472)
T PRK01297 160 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 236 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH---HHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCE
T ss_conf 5299987999999999999999746279769999789887999---9998558998899797999987434825425522
Q ss_pred EEEE
Q ss_conf 3897
Q gi|254780601|r 315 LVIH 318 (573)
Q Consensus 315 ~Vin 318 (573)
++|-
T Consensus 237 ~lVl 240 (472)
T PRK01297 237 VMVL 240 (472)
T ss_pred EEEE
T ss_conf 9999
No 190
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family; InterPro: IPR004473 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the R subunit (HsdR) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity , , , .; GO: 0003677 DNA binding, 0005524 ATP binding, 0009035 Type I site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system.
Probab=96.45 E-value=0.063 Score=32.13 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=76.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 69999289874689999999998610421225568827999849989999999999998544698799998899879999
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~ 118 (573)
-+|=+ -|||||||..+--+-- +.... ....|.++|++==|||=.|+.+++..+... + .-++..-.|+..=.
T Consensus 326 G~iWH-tQGSGKtlTm~f~A~k-~~~~~----~~~~p~v~fvvDR~eLd~Ql~~~~~~~~~~--~-~~~~~~~eS~~~Lk 396 (813)
T TIGR00348 326 GLIWH-TQGSGKTLTMLFLARK-LRKQK----ELKNPKVFFVVDRRELDEQLYKEFSSLKDL--I-KDCAERIESIAELK 396 (813)
T ss_pred CEEEE-EECCCHHHHHHHHHHH-HHHHH----HHCCCEEEEEEECHHHHHHHHHHHHHHHHH--C-HHHHHCCCCHHHHH
T ss_conf 44898-5076378899999999-98746----526984999972727788999999876420--1-01042067888999
Q ss_pred HHHCC------C-----CEEEEECCCCHHH--------HHHCCC----CCCCCCEEEEEECCCCC--------CCCHHHH
Q ss_conf 96128------9-----7599822310133--------210001----22464318999613110--------0100123
Q gi|254780601|r 119 RDLQN------G-----AHIVVGTPGRLCD--------HIRGKG----LNISHLKAVVLDEADEM--------LDLGFRD 167 (573)
Q Consensus 119 ~~l~~------~-----~~iiv~TPgrl~d--------~~~~~~----l~l~~v~~lVlDEaD~m--------l~~gf~~ 167 (573)
+.|.+ . --|+++|=.++-+ ..+... ....+| .+++|||-+- -+--|..
T Consensus 397 ~~L~~~~~sennPn~~k~g~~~t~IqKF~~~~~~k~~e~~~~~~~~i~~~r~~v-v~i~DEaHRsqyG~tqklhnGkfqt 475 (813)
T TIGR00348 397 ELLEKNDESENNPNISKRGIIITTIQKFDDELLDKLKEEEEKFPESIIIDRKEV-VVIIDEAHRSQYGKTQKLHNGKFQT 475 (813)
T ss_pred HHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCE-EEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 987517764567553567679996001040344536888743873689871608-9997067555353411000441358
Q ss_pred HHHHHHHHCCCCCCEEEEECC
Q ss_conf 578887521433422563111
Q gi|254780601|r 168 DIEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 168 ~i~~i~~~~p~~~q~~l~SAT 188 (573)
-+..-|+.+=++.-.+-|++|
T Consensus 476 Gla~~~~~~lknA~f~gFTGT 496 (813)
T TIGR00348 476 GLAKALKKALKNASFFGFTGT 496 (813)
T ss_pred HHHHHHHHHCHHHHHHCCCCC
T ss_conf 999999874311201012247
No 191
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.057 Score=32.46 Aligned_cols=68 Identities=22% Similarity=0.430 Sum_probs=51.7
Q ss_pred EEEECCCHHHHHHHHHHHHHC-----CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-----CCCCC-CCCCCCCE
Q ss_conf 677513023345655555422-----66630104899999999998665448814998538-----65001-45788733
Q gi|254780601|r 247 AIVFCSTRASVSRFTKVLAEH-----LFQVVALSGELSQQERSNALQMMRDGRARVCIATD-----VAARG-IDLPDLEL 315 (573)
Q Consensus 247 ~ivF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD-----vaaRG-iDi~~v~~ 315 (573)
+||.+.|++-+..+++.+... ++.+..+.|+++...+. ..++.| .+|+|||. +..++ +|+..|.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEE
T ss_conf 6997799999999999999998624584299998998989999---987249-989997960899998648855465018
Q ss_pred EEE
Q ss_conf 897
Q gi|254780601|r 316 VIH 318 (573)
Q Consensus 316 Vin 318 (573)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEE
T ss_conf 996
No 192
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.38 E-value=0.087 Score=31.20 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=83.1
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 9999997879878989999999997599--69999289874689999999998610421225568827999849989999
Q gi|254780601|r 11 IGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88 (573)
Q Consensus 11 l~~~l~~~g~~~pt~iQ~~~ip~~l~g~--d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~ 88 (573)
.-..|..+..+.+..=|.+.+..++++. =+++.|.-|=||+++-+|.+.. +..... ...++|-+||.+=+.
T Consensus 203 ~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~~------~~~iiVTAP~~~nv~ 275 (758)
T COG1444 203 FPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLAG------SVRIIVTAPTPANVQ 275 (758)
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHHCC------CCEEEEECCCHHHHH
T ss_conf 8788865303751899999999997089835999867787476887499999-997337------720899679778899
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 9999999985446987999988998799999612-897599822310133210001224643189996131100100123
Q gi|254780601|r 89 QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167 (573)
Q Consensus 89 Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~ 167 (573)
.+.+-+..-...+|.+-...... .-++.... ++..|=.-.|-. -.. .-.++|+|||=-+ - .+
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~~~---~g~~~~~~~~~~~i~y~~P~~---------a~~-~~DllvVDEAAaI-p---lp 338 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDA---LGEIREVSGDGFRIEYVPPDD---------AQE-EADLLVVDEAAAI-P---LP 338 (758)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC---CCCEEEECCCCEEEEEECCHH---------HCC-CCCEEEEEHHHCC-C---HH
T ss_conf 99999987699827745556344---244000047742577517500---------125-6888998103128-8---69
Q ss_pred HHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 57888752143342256311112
Q gi|254780601|r 168 DIEFILDSSPKKRRMLMFSATIS 190 (573)
Q Consensus 168 ~i~~i~~~~p~~~q~~l~SAT~~ 190 (573)
-++.++ ...+.++||.|+.
T Consensus 339 lL~~l~----~~~~rv~~sTTIh 357 (758)
T COG1444 339 LLHKLL----RRFPRVLFSTTIH 357 (758)
T ss_pred HHHHHH----HHCCCEEEEEEEC
T ss_conf 999998----6448169997402
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.37 E-value=0.017 Score=35.99 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=19.8
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 24643189996131100100123578887521
Q gi|254780601|r 145 NISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176 (573)
Q Consensus 145 ~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~ 176 (573)
...+...+++||+|.| ..++...+..++...
T Consensus 81 ~~~~~~vl~iDEi~~l-~~~~~~~~~~~l~~~ 111 (151)
T cd00009 81 EKAKPGVLFIDEIDSL-SRGAQNALLRVLETL 111 (151)
T ss_pred HHCCCCEEEEECHHHC-CHHHHHHHHHHHHHH
T ss_conf 9769986982016655-999999999999871
No 194
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.33 E-value=0.0069 Score=38.62 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 222001111210123333233
Q gi|254780601|r 190 SPAITTLAKNYQKDAVRVNIA 210 (573)
Q Consensus 190 ~~~i~~l~~~~~~~p~~i~~~ 210 (573)
..+|.+++++.|-|+++--..
T Consensus 188 DAPvvKFvN~iL~DAir~GAS 208 (577)
T TIGR02538 188 DAPVVKFVNKILLDAIRKGAS 208 (577)
T ss_pred CCCCHHHHHHHHHHHHHCCCC
T ss_conf 887013387879999846886
No 195
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=96.33 E-value=0.022 Score=35.24 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 898999999999759969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
++|-|.++|-. .+.++++.|.-|||||..-.-=++..|.... ..+ -+.|+++-|+.-|....+-+...
T Consensus 1 Ln~~Q~~av~~--~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~--~~p---~~IL~lTFT~kAA~Em~~Ri~~~ 68 (494)
T pfam00580 1 LNPEQRKAVTH--LGGPLLVLAGAGTGKTRVLTERIAYLILEGG--IDP---EEILAVTFTNKAAREMKERILKL 68 (494)
T ss_pred CCHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHHHHHCC--CCH---HHEEEEECHHHHHHHHHHHHHHH
T ss_conf 99889999809--9999799971870689999999999998189--997---47876702899999999999987
No 196
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.31 E-value=0.029 Score=34.40 Aligned_cols=102 Identities=24% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 000002455420010--235641677513023345655555422-66630104899999999998665448814998538
Q gi|254780601|r 226 VALSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 226 v~~~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~-g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
|..+-|.+...++++ .....++||-+.....+..+.+.|... |..+..+|++++..+|..+..+.++|+.+|+|.|=
T Consensus 194 vTGSGKTevYl~li~~~l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtR 273 (699)
T PRK05580 194 VTGSGKTEVYLQAIAEALAQGKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAALRGEARVVIGTR 273 (699)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89860799999999999973997899917678789999999987099579964889857999999999769971999736
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 6500145788733897058874789998
Q gi|254780601|r 303 VAARGIDLPDLELVIHAELSSNPENLLH 330 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d~P~~~~~yvH 330 (573)
-|. =+=++++.+||-.+ ....+|-+
T Consensus 274 SAv-FaP~~nLgLIIVDE--Ehd~SYKq 298 (699)
T PRK05580 274 SAL-FAPFKNLGLIIVDE--EHDDSYKQ 298 (699)
T ss_pred CEE-ECCCCCCCEEEEEC--CCCHHHCC
T ss_conf 011-06578984899973--65454446
No 197
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=96.30 E-value=0.067 Score=31.95 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=56.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 99992898746899999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~ 119 (573)
++++.-.|||||+. ++-++..+..... .-.++.|++...|..-+++.+..-. +.....
T Consensus 4 ~~V~G~pGtGKTvv-~l~l~~~l~~~~~------~~~~~~l~~N~~~~~~l~~~l~~~~---~~~~~~------------ 61 (348)
T pfam09848 4 FLVTGGPGTGKTVV-ALNLFAELSDSDL------GRTAVFLSGNHPLVLVLYEALAGDL---KVRKKK------------ 61 (348)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHHCCC------CCCEEEEECCHHHHHHHHHHHHHHC---CHHHCC------------
T ss_conf 99977799389999-9999999864402------6820899578669999999986041---200102------------
Q ss_pred HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC---HH----HHHHHHHHHH
Q ss_conf 61289759982231013321000122464318999613110010---01----2357888752
Q gi|254780601|r 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL---GF----RDDIEFILDS 175 (573)
Q Consensus 120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~---gf----~~~i~~i~~~ 175 (573)
++..|.-++..+. -.-.+...+|+|||-+|.+. +| .+.+..|++.
T Consensus 62 --------~~~~~~~fi~~~~---~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~ 113 (348)
T pfam09848 62 --------LFRKPTSFINNLH---KAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKR 113 (348)
T ss_pred --------CCCCCHHHHCCCC---CCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf --------0007252316523---579867789983178665433655677857999999975
No 198
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.066 Score=32.03 Aligned_cols=127 Identities=23% Similarity=0.299 Sum_probs=57.8
Q ss_pred CCEEEECCCCCCH-HHHHHHHHHHHHHCCCC--CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-
Q ss_conf 9699992898746-89999999998610421--2255688279998499899999999999985446987999988998-
Q gi|254780601|r 38 KDVLVSAQTGSGK-TVAFGLALASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS- 113 (573)
Q Consensus 38 ~d~i~~a~TGsGK-T~af~lp~l~~l~~~~~--~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~- 113 (573)
+-.+...+.|+|| |+||.+.- .++.... .......+..+-+.|..-.+.||.. +.+.++.+ +.-+.+
T Consensus 40 HA~Lf~Gp~GiGK~tlA~~~A~--~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~-----~~hpdl~~--i~r~~d~ 110 (363)
T PRK07471 40 HAWLIGGPQGIGKATLAYRMAR--FLLATPPPGGDAVFPPPASLAVDPDHPVARRIAA-----GAHGGLLT--LERSWNE 110 (363)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHC-----CCCCCEEE--EECCCCC
T ss_conf 4587679998188999999999--9857999777776787053125877728999952-----69998466--7620011
Q ss_pred ---------HHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCE
Q ss_conf ---------799999612897599822310133210001224643189996131100100123578887521--433422
Q gi|254780601|r 114 ---------VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRM 182 (573)
Q Consensus 114 ---------~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~ 182 (573)
..+|++.|. ..+.... ..+.-|++||||||+|=. +.-+.+|+.+ |...-+
T Consensus 111 k~~~~~~~I~Vd~iR~l~--------------~~~~~~p-~~g~~kV~IId~ad~mn~----~aaNALLK~LEEPP~~t~ 171 (363)
T PRK07471 111 KGKRLRTVITVDEVRETI--------------GFFGLTA-AEGGWRVVIVDTADEMNA----NAANALLKVLEEPPARSL 171 (363)
T ss_pred CCCCCCCCCCHHHHHHHH--------------HHHCCCC-CCCCCEEEEEECHHHHCH----HHHHHHHHHHCCCCCCEE
T ss_conf 333212445399999999--------------9972485-248966999868787388----999999997215898838
Q ss_pred EEEECCCCCC
Q ss_conf 5631111222
Q gi|254780601|r 183 LMFSATISPA 192 (573)
Q Consensus 183 ~l~SAT~~~~ 192 (573)
.++-++-|..
T Consensus 172 fiLit~~~~~ 181 (363)
T PRK07471 172 LLLVSHAPAR 181 (363)
T ss_pred EEEEECCHHH
T ss_conf 9986399777
No 199
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.28 E-value=0.098 Score=30.84 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861042122556882799984998999999999999854
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
.|.......=+||.++++ +..+.. .. .. ..||+||+.+-|.+.++++..|+.
T Consensus 13 aG~~~~l~gL~GSA~al~--lA~l~~---~~------~~-p~lvV~~d~~~A~~l~~dL~~f~~ 64 (1148)
T PRK10689 13 AGDQRQLGELTGAACATL--VAEIAE---RH------AG-PVVLIAPDMQNALRLHDEISQFTD 64 (1148)
T ss_pred CCCEEECCCCCCHHHHHH--HHHHHH---HH------CC-CEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 997126778860699999--999999---70------99-889991999999999999985489
No 200
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.075 Score=31.62 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=55.9
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH--HCCCEEEEEECCCCH-
Q ss_conf 69999289874689-99999999861042122556882799984998999999999999854--469879999889987-
Q gi|254780601|r 39 DVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSV- 114 (573)
Q Consensus 39 d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~--~~~~~v~~~~gg~~~- 114 (573)
--+-..|.|+|||. |..+.- .+....... .| |-. +..+.++.. +.++.+..- .|.++
T Consensus 41 AyLF~Gp~G~Gk~~~A~~~A~--~l~C~~~~~----~~-----cg~-------C~~C~~i~~g~hpDv~~i~p-~~~~i~ 101 (395)
T PRK07940 41 AWLFTGPPGSGRSNAARAFAA--ALQCTDPGV----PG-----CGE-------CRACRTVLAGTHPDVRVVVP-EGLSIG 101 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHCCCCCCC----CC-----CCC-------CHHHHHHHCCCCCCEEEEEC-CCCCCC
T ss_conf 376368998788999999999--966999999----99-----987-------87899987689987189826-877688
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCC
Q ss_conf 99999612897599822310133210001224643189996131100100123578887521--4334225631111222
Q gi|254780601|r 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPA 192 (573)
Q Consensus 115 ~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~ 192 (573)
.+|++.|.. -+.... .-+.-|.+|+||||+|-.- .-+.+||.+ |...-++++.+|-|..
T Consensus 102 id~iR~l~~--------------~~~~~p-~~~~~kv~ii~~a~~m~~~----a~NalLKtLEEPp~~~~fiL~t~~~~~ 162 (395)
T PRK07940 102 VDEVREIVQ--------------IAARRP-TTGRWRIVVIEDADRLTER----AANALLKAVEEPPPRTVWLLCAPSVED 162 (395)
T ss_pred HHHHHHHHH--------------HHHHCC-CCCCCEEEEEECHHHHCHH----HHHHHHHHHCCCCCCEEEEEEECCHHH
T ss_conf 999999999--------------985273-0379559998077874899----999999852178888699987399787
Q ss_pred C
Q ss_conf 0
Q gi|254780601|r 193 I 193 (573)
Q Consensus 193 i 193 (573)
+
T Consensus 163 l 163 (395)
T PRK07940 163 V 163 (395)
T ss_pred H
T ss_conf 4
No 201
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.18 E-value=0.11 Score=30.52 Aligned_cols=127 Identities=24% Similarity=0.253 Sum_probs=65.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 99992898746899999999986104212255688279998499-89999999999998544698799998899879999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT-RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT-rELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~ 118 (573)
++...+||+|||.+-+ =+..++... +..-+||=+=| |-=| .++++.++..+++.+..+....+...-.
T Consensus 3 i~lvGptGvGKTTTia-KLA~~~~~~-------~~kV~lit~Dt~R~gA---~eQL~~~a~~l~v~~~~~~~~~~~~~~~ 71 (173)
T cd03115 3 ILLVGLQGVGKTTTAA-KLALYLKKK-------GKKVLLVAADTYRPAA---IEQLRVLGEQVGVPVFEEGEGKDPVSIA 71 (173)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHC-------CCEEEEEECCCCCHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 9998999998899999-999999976-------9928999748875779---9999999997498599227755879999
Q ss_pred H-HH----CCCC-EEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9-61----2897-5998223101332100012246431899961311001001235788875214334225631111222
Q gi|254780601|r 119 R-DL----QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 (573)
Q Consensus 119 ~-~l----~~~~-~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~ 192 (573)
+ .+ .++. -|+|=||||.-. |+. -.+++..++.......-.++.|||...+
T Consensus 72 ~~~~~~~~~~~~D~IlIDTaGr~~~-----------------d~~-------~~~el~~l~~~~~p~~~~LVl~a~~~~~ 127 (173)
T cd03115 72 KRAIEHAREENFDVVIVDTAGRLQI-----------------DEN-------LMEELKKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC-----------------CHH-------HHHHHHHHHHHHCCCCCEEECCCCCHHH
T ss_conf 9999998756899899978887879-----------------999-------9999999986448972157424655065
Q ss_pred CHHHHHHHC
Q ss_conf 001111210
Q gi|254780601|r 193 ITTLAKNYQ 201 (573)
Q Consensus 193 i~~l~~~~~ 201 (573)
..+.++.|-
T Consensus 128 ~~~~~~~f~ 136 (173)
T cd03115 128 AVNQAKAFN 136 (173)
T ss_pred HHHHHHHHH
T ss_conf 899999987
No 202
>PRK10536 hypothetical protein; Provisional
Probab=96.18 E-value=0.11 Score=30.50 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH-------HH
Q ss_conf 98789899999999975996999928987468999999999861042122556882799984998999999-------99
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV-------GR 92 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv-------~~ 92 (573)
+..-|+=|+..|..+-+..=+++..+.|||||+--+--.++.+.... . -+.++.=|+-|....+ .+
T Consensus 57 i~pkt~~Q~~yi~~i~~~~ivf~~GpAGTGKT~lA~a~Al~~l~~~~--~-----~kIIltRP~V~~ge~lGfLPGdl~E 129 (262)
T PRK10536 57 ILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD--V-----DRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCC--C-----CEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 67898649999999861983999899987589999999999998588--8-----6899966787567666769898799
Q ss_pred HHHHH----HHHCCCEEEEEECCCCHHHHHHHHCCC-CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 99998----544698799998899879999961289-7599822310133210001224643189996131100100123
Q gi|254780601|r 93 ELEWL----YAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167 (573)
Q Consensus 93 ~~~~l----~~~~~~~v~~~~gg~~~~~q~~~l~~~-~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~ 167 (573)
-+.-+ ...+. -.+|. +.... .++.. -.|-|. | +.++.-.+ +++ .++|+|||-.|- .+
T Consensus 130 K~~Pyl~Pi~D~L~----~~lg~-~~~~~--~~~~e~G~Iei~-P---lafmRGrT--f~n-a~IIvDEaQN~T----~~ 191 (262)
T PRK10536 130 KFAPYFRPVYDVLV----RRLGA-SFMQY--CLRPEIGKVEIA-P---FAYMRGRT--FEN-AVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHHH----HHHCH-HHHHH--HHHHHCCCEEEE-E---HHHHCCCC--CCC-EEEEEEHHHCCC----HH
T ss_conf 88788878999999----99685-99999--987305948998-7---58744775--144-289984121289----99
Q ss_pred HHHHHHHHCCCCCCEEEE
Q ss_conf 578887521433422563
Q gi|254780601|r 168 DIEFILDSSPKKRRMLMF 185 (573)
Q Consensus 168 ~i~~i~~~~p~~~q~~l~ 185 (573)
++..++..+-.+...+++
T Consensus 192 qmk~iLTRiG~~SKiVi~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 998898542599689996
No 203
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=96.15 E-value=0.014 Score=36.60 Aligned_cols=102 Identities=23% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEECCCHHHHH----HHHHHHHHH
Q ss_conf 89899999999975996999928987468999999999861042122-5568827999849989999----999999998
Q gi|254780601|r 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF-SPASAPLALAIAPTRELAV----QVGRELEWL 97 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~-~~~~~~~~lil~PTrELa~----Qv~~~~~~l 97 (573)
-|+=|.+||- -.|+||+|.|--|||||+- +++||+....+. .+..=-+-||.+=|..-|. -|...+.+.
T Consensus 2 wT~~Q~~AI~--~~G~nILVsAsAGSGKTaV----LVERii~~i~~gE~pvdiDrLLVVTFTnaAA~EMK~Ri~~~l~k~ 75 (1295)
T TIGR02785 2 WTDEQWQAIY--DRGQNILVSASAGSGKTAV----LVERIIKKILRGENPVDIDRLLVVTFTNAAAREMKERIEEALQKE 75 (1295)
T ss_pred CCHHHHHHHH--HCCCCEEEEEECCCCCHHH----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8788899996--3688647653226661478----999999996478877020210367888999999999999999997
Q ss_pred HHHCC----CEEEEEECCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf 54469----8799998899879999961289759982231
Q gi|254780601|r 98 YAKTG----VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 (573)
Q Consensus 98 ~~~~~----~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPg 133 (573)
....+ -+..++.+-..+.+|+..|. .==|+|=-
T Consensus 76 l~~~~~d~P~~~ta~~~~~hl~~QL~lL~---~A~ISTlh 112 (1295)
T TIGR02785 76 LAQEPDDDPERRTAVDNSKHLRRQLALLN---KANISTLH 112 (1295)
T ss_pred HCCCCCCCCHHHHCCHHHHHHHHHHHHCC---CCCCHHHH
T ss_conf 43688887123204437899999996446---76510457
No 204
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.014 Score=36.56 Aligned_cols=30 Identities=33% Similarity=0.577 Sum_probs=19.8
Q ss_pred CCHHHHHHHHCCCCCC--C--CCCEEEEEECHHH
Q ss_conf 7478999860301037--8--8860256405999
Q gi|254780601|r 323 SNPENLLHRSGRTGRA--G--RKGMSVFVIPQNM 352 (573)
Q Consensus 323 ~~~~~yvHR~GRtgRa--g--~~G~ai~l~~~~e 352 (573)
.|.-+|+|-+|||.|. | .+|.|+.++...+
T Consensus 527 PD~~TYIQaSGRtSRLyaGglTkGlSvvlvdd~~ 560 (1187)
T COG1110 527 PDVRTYIQASGRTSRLYAGGLTKGLSVVLVDDPE 560 (1187)
T ss_pred CCHHHHEECCCHHHHHHCCCCCCCEEEEEECCHH
T ss_conf 5746631026617665426634622899956889
No 205
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.02 E-value=0.082 Score=31.39 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 45655555422666
Q gi|254780601|r 257 VSRFTKVLAEHLFQ 270 (573)
Q Consensus 257 ~~~l~~~L~~~g~~ 270 (573)
...+.+.|...|+.
T Consensus 136 ~~~l~~~L~~~gv~ 149 (282)
T TIGR03499 136 GAKLYERLEEAGVS 149 (282)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999986999
No 206
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=96.01 E-value=0.13 Score=29.97 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 9699992898746899999999986104212255688279998499899999-999999985446987999988998799
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ-VGRELEWLYAKTGVVVAVCIGGVSVHR 116 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Q-v~~~~~~l~~~~~~~v~~~~gg~~~~~ 116 (573)
+=.|+....|||||-++++-++..+..... .+|++-+|.--..+ |+.++.+.....++....-+.-.++.
T Consensus 3 r~~v~~GGrgsgKS~~~a~~~i~~~~~~~~--------~~l~~r~~~~slr~sv~~~~~~~i~~~~~~~~~~~~~s~~~- 73 (387)
T pfam04466 3 RYKVAKGGRGSGKSYHIALKLVLKLLMHPR--------TNLVIREVKNTIEDSVFTQLQEALSMLGLDHEFKISKSPIE- 73 (387)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCC--------EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEE-
T ss_conf 689999088867999999999999987898--------69999755688999999999999997699734897376148-
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCCC-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 9996128975998223101332100012-24643189996131100100123578887521--43342256311112220
Q gi|254780601|r 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 117 q~~~l~~~~~iiv~TPgrl~d~~~~~~l-~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
+..+..|..|++.-- |- -..+ ....+..+.+|||++|= .++.+.+...+ +.....+++|-+ |...
T Consensus 74 -i~~~~~gs~i~f~G~----d~--~~~iks~~~i~~~~~eEa~~~~----~~~~~~l~~~~r~~~~~~~i~~~~N-P~~~ 141 (387)
T pfam04466 74 -ITVKINGSKFLFYGM----DD--PAKIKSIKDVSDAWIEEAAEFK----TEDFDQLIPTIRRPKPGSEIFMSFN-PVNK 141 (387)
T ss_pred -EEECCCCCEEEEEEC----CC--HHHHHCCCCCEEEEEECHHHCC----HHHHHHHHHHHCCCCCCEEEEEECC-CCCC
T ss_conf -998789969999857----89--6884163661499994124479----9899999988531788719999828-9998
Q ss_pred HH
Q ss_conf 01
Q gi|254780601|r 194 TT 195 (573)
Q Consensus 194 ~~ 195 (573)
..
T Consensus 142 ~~ 143 (387)
T pfam04466 142 LN 143 (387)
T ss_pred CC
T ss_conf 77
No 207
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.97 E-value=0.026 Score=34.72 Aligned_cols=119 Identities=27% Similarity=0.327 Sum_probs=69.8
Q ss_pred CCHHHHHHHHH-HHCCCCEEEECCCCCCHHH-HHHHHHHHHHHC-CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 89899999999-9759969999289874689-999999998610-42122556882799984998999999999999854
Q gi|254780601|r 23 LTSVQEAILNP-DLREKDVLVSAQTGSGKTV-AFGLALASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 23 pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~-af~lp~l~~l~~-~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
.|.=|.-+|-. +...+|+++..-||||||- |= .+|.+|.. .. ..-+.+||==|+|| |.. +.++
T Consensus 124 mtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaN--Alla~I~~l~~------P~dR~vIiEDT~El--QC~--A~N~-- 189 (315)
T TIGR02782 124 MTAAQRDVLREAVAARKNILVVGGTGSGKTTLAN--ALLAEIAKLND------PDDRVVIIEDTAEL--QCA--AENL-- 189 (315)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH--HHHHHHHHCCC------CCCEEEEEECCHHH--HHC--CCCE--
T ss_conf 5578999999999712988998145885799999--99998852169------99618998547132--013--7870--
Q ss_pred HCCCEEEEEECCCCHHHHHH-HHCCCCE-EEEECC--CCHHHHHHC-CCCCCCCCEEEEEECC
Q ss_conf 46987999988998799999-6128975-998223--101332100-0122464318999613
Q gi|254780601|r 100 KTGVVVAVCIGGVSVHRERR-DLQNGAH-IVVGTP--GRLCDHIRG-KGLNISHLKAVVLDEA 157 (573)
Q Consensus 100 ~~~~~v~~~~gg~~~~~q~~-~l~~~~~-iiv~TP--grl~d~~~~-~~l~l~~v~~lVlDEa 157 (573)
.-++...= =|.+|..=++ .|+-.|| |+||== |--+|+|+= ++=+-.-+-++==+.|
T Consensus 190 -V~lrT~d~-~Gi~M~~LLk~TLRlRPDRI~VGEVRg~eAL~LLKAWNTGHPGGi~TiHAn~a 250 (315)
T TIGR02782 190 -VALRTSDD-VGISMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIHANNA 250 (315)
T ss_pred -EEEECCCC-CCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCH
T ss_conf -68744898-66147888887500588733563014389999986405899530203314886
No 208
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.94 E-value=0.027 Score=34.65 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCCCCCEEEEECCCHHHHH----HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCCCC
Q ss_conf 0235641677513023345----65555542266630104899999999998665448814998538-650014578873
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD-VAARGIDLPDLE 314 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~----~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD-vaaRGiDi~~v~ 314 (573)
-.....++.+-+.|---+. .+...|...|+++..|.|.++..+|..+++.+.+|+++++|.|- +...++.+.++.
T Consensus 302 ~~~~g~q~a~maPTeiLa~Qh~~~~~~~~~~~~i~v~lltg~~~~~~~~~~~~~~~~g~~~i~iGTHal~~~~v~f~~Lg 381 (677)
T PRK10917 302 AIEAGYQAALMAPTEILAEQHYRNLKKWLEPLGIRVALLTGSLKGKERREILEALASGEADIVIGTHALIQDDVEFHNLG 381 (677)
T ss_pred HHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCCC
T ss_conf 99819948998767999999999999877634988998407741778999999985799778973078773556446665
Q ss_pred EEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 38970588747899986030103
Q gi|254780601|r 315 LVIHAELSSNPENLLHRSGRTGR 337 (573)
Q Consensus 315 ~Vin~d~P~~~~~yvHR~GRtgR 337 (573)
+||-= =-||-|=--|
T Consensus 382 lvviD--------EQHrFGV~QR 396 (677)
T PRK10917 382 LVIID--------EQHRFGVHQR 396 (677)
T ss_pred EEEEC--------HHHHHHHHHH
T ss_conf 69953--------0577639999
No 209
>KOG1002 consensus
Probab=95.92 E-value=0.07 Score=31.85 Aligned_cols=127 Identities=27% Similarity=0.336 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHCCCC-----EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 98789899999999975996-----9999289874689999999998610421225568827999849989999999999
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREKD-----VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~d-----~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~ 94 (573)
+..+.|.|..-+-.+....+ =|..-.-|.|||.- .|..++.+..+ . +.||++||-.| +|--+++
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQ----tIaLllae~~r-----a-~tLVvaP~VAl-mQW~nEI 250 (791)
T KOG1002 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQ----TIALLLAEVDR-----A-PTLVVAPTVAL-MQWKNEI 250 (791)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCHHHH----HHHHHHHCCCC-----C-CEEEECCHHHH-HHHHHHH
T ss_conf 421314467778888773554312431124314641799----99999862356-----8-70697548999-9999999
Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC--------CCC-----CCCCCEE--EEEECCCC
Q ss_conf 99854469879999889987999996128975998223101332100--------012-----2464318--99961311
Q gi|254780601|r 95 EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG--------KGL-----NISHLKA--VVLDEADE 159 (573)
Q Consensus 95 ~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~--------~~l-----~l~~v~~--lVlDEaD~ 159 (573)
..+.. -.+++. +|-|+.-+..++.|. +-|+|..|-.-+-.-..+ +.+ -|.+++| +|||||.-
T Consensus 251 ~~~T~-gslkv~-~YhG~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~ 327 (791)
T KOG1002 251 ERHTS-GSLKVY-IYHGAKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHN 327 (791)
T ss_pred HHHCC-CCEEEE-EEECCCCCCCHHHHH-CCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEHHHHCC
T ss_conf 87625-764799-972642357788860-676799701878889874023421137742453233310102352212025
Q ss_pred C
Q ss_conf 0
Q gi|254780601|r 160 M 160 (573)
Q Consensus 160 m 160 (573)
.
T Consensus 328 I 328 (791)
T KOG1002 328 I 328 (791)
T ss_pred C
T ss_conf 3
No 210
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.096 Score=30.91 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHH----CC---CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 78989999999997----59---969999289874689999999998610421225568827999849989999999999
Q gi|254780601|r 22 NLTSVQEAILNPDL----RE---KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l----~g---~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~ 94 (573)
..||=|..++..+. .| +-.+...+.|+||+. +..-+.+.+....... . .|..... +
T Consensus 4 ~~~PWq~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~-~A~~~A~~llc~~~~~------~---------~~~~~~~-~ 66 (319)
T PRK08769 4 AFSPWQQRAFDQTVAALDAGRLGHGLLICGPEGLGKRA-VALALAEHVLASGPDP------A---------LAQRTRQ-L 66 (319)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHHHCCCCCC------C---------CCCHHHH-H
T ss_conf 55877689999999999769942068758999878999-9999999983799797------6---------5433889-9
Q ss_pred HHHHHHCCCEEEEEEC---CCC----H-HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 9985446987999988---998----7-9999961289759982231013321000122464318999613110010012
Q gi|254780601|r 95 EWLYAKTGVVVAVCIG---GVS----V-HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166 (573)
Q Consensus 95 ~~l~~~~~~~v~~~~g---g~~----~-~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~ 166 (573)
...+.+.++.+..... |.. + -+|++.|. +.+.... ..+.-|.+|||+||.|=.
T Consensus 67 i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l~--------------~~~~~~p-~~g~~KV~IId~Ad~mn~---- 127 (319)
T PRK08769 67 IAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS--------------QKLALTP-QYGIAQVVIVDPADAINR---- 127 (319)
T ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH--------------HHHHHCC-CCCCCEEEEECCHHHCCH----
T ss_conf 966899896877534444543112348699999999--------------9961372-027956999806675289----
Q ss_pred HHHHHHHHHC---CCCCCEEEEE
Q ss_conf 3578887521---4334225631
Q gi|254780601|r 167 DDIEFILDSS---PKKRRMLMFS 186 (573)
Q Consensus 167 ~~i~~i~~~~---p~~~q~~l~S 186 (573)
+.-+.+|+.+ |.+.-.+|.|
T Consensus 128 ~AaNalLK~LEEPp~~~~~iL~~ 150 (319)
T PRK08769 128 SACNALLKTLEEPSPGRYLWLIS 150 (319)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 99999999822799884899986
No 211
>KOG3089 consensus
Probab=95.91 E-value=0.0084 Score=38.04 Aligned_cols=42 Identities=33% Similarity=0.596 Sum_probs=35.3
Q ss_pred HHHHHHHCC-CCEEEEECCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 999996128-975998223101332100012246431899961
Q gi|254780601|r 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 (573)
Q Consensus 115 ~~q~~~l~~-~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDE 156 (573)
+.|++.+++ -+|+-||||||+..+++.+.++++.++++|||=
T Consensus 186 ~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089 186 QAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 9999887524134753685889999983587777312578623
No 212
>KOG0331 consensus
Probab=95.89 E-value=0.15 Score=29.65 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=75.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHC----CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCCC-CC
Q ss_conf 0235641677513023345655555422----6663010489999999999866544881499853-----865001-45
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEH----LFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAARG-ID 309 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaRG-iD 309 (573)
..-....++|-+.||+-+..+....... ++++.++.|+.++..... +.++| ++|+|+| |..-.| +|
T Consensus 161 ~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~---~l~~g-vdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331 161 SRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLR---DLERG-VDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHH---HHHCC-CCEEEECCHHHHHHHHCCCCC
T ss_conf 47999869997685999999999999970777740799868988637889---87559-818980771789999748856
Q ss_pred CCCCCEEEE--------ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 788733897--------05887478999860301037888602564059999999
Q gi|254780601|r 310 LPDLELVIH--------AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356 (573)
Q Consensus 310 i~~v~~Vin--------~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~ 356 (573)
+.+|+|++. .++-.+++..+++++|+-| .-..++-.-|.+.+.+
T Consensus 237 l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~l 288 (519)
T KOG0331 237 LSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQL 288 (519)
T ss_pred CCCEEEEEECCHHHHHCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCHHHHHH
T ss_conf 453039996347766313537999999875589752---2788865464889999
No 213
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=95.85 E-value=0.15 Score=29.53 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=57.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHH-CCCEEEEEECCCCHHHHHH
Q ss_conf 99289874689999999998610421225568827999849989999999-999998544-6987999988998799999
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG-RELEWLYAK-TGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~-~~~~~l~~~-~~~~v~~~~gg~~~~~q~~ 119 (573)
+....|||||.+++.-++.+....... .++|++||..-+..+. ..+..+... .+.....- .+...
T Consensus 2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~-------~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i 68 (380)
T pfam03237 2 ILGSRQSGKTFAFAREALRHALGNGPK-------NQIILSASKAQARLEFKKGIIEIAGDLLEITFEEK------NGNPI 68 (380)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCC-------CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEC------CCCEE
T ss_conf 426452528399999999999858997-------28999799999999999999996688638716727------88739
Q ss_pred HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 6128975998223101332100012246431899961311001
Q gi|254780601|r 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162 (573)
Q Consensus 120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~ 162 (573)
.+.+|..|.+..-.. -+ ....+.-..+.++++||+..+=+
T Consensus 69 ~~~nGs~i~~~~~~~-~~--~~~~~rG~~~~~i~~DE~a~~~~ 108 (380)
T pfam03237 69 ILPNGAKLYFLGLES-ET--TAQGYRGASIAGIYFDEATWLPK 108 (380)
T ss_pred EECCCCEEEEEECCC-CC--CHHHCCCCCCCEEEEEEHHHCCC
T ss_conf 915998899962577-66--43103485455499830453662
No 214
>KOG0701 consensus
Probab=95.82 E-value=0.0046 Score=39.79 Aligned_cols=101 Identities=19% Similarity=0.295 Sum_probs=76.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCC-CCCCCCCCCCC-----------HHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 02356416775130233456555554226-66301048999-----------9999999866544881499853865001
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELS-----------QQERSNALQMMRDGRARVCIATDVAARG 307 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~-----------q~~R~~~~~~fr~g~~~vLV~TDvaaRG 307 (573)
+....-.+|+||+-+..+-.+.+.+.... +....+-|.+. +..+..+|..|+...+++|++|-++--|
T Consensus 288 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~ 367 (1606)
T KOG0701 288 EKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEG 367 (1606)
T ss_pred HHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76665441341243068999999999865058420223336754205689998520788888863015688777788750
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCC
Q ss_conf 457887338970588747899986030103788
Q gi|254780601|r 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 (573)
Q Consensus 308 iDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~ 340 (573)
+|++.++.|+.+|.|.....|+.+.||+-+++.
T Consensus 368 ~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701 368 VDVPKCNLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred CCHHHHHHHEECCCCCHHHHHHHHHCCCCCCHH
T ss_conf 651654231002576138888876403565214
No 215
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.77 E-value=0.17 Score=29.31 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=21.5
Q ss_pred EEEECHHHCCCCHHHHHHHHHHCCCCCH
Q ss_conf 9996702279868899997750028998
Q gi|254780601|r 469 FSLSVGSKQKAEARWLMPMLCRSSGINR 496 (573)
Q Consensus 469 ~~InvGr~d~v~p~~ivgai~~~~~i~~ 496 (573)
-||=+-..|+++|..+.-.|++.+.-++
T Consensus 353 ~FiIIDEaQNLTpheikTiltR~G~GsK 380 (436)
T COG1875 353 SFIIIDEAQNLTPHELKTILTRAGEGSK 380 (436)
T ss_pred CEEEEEHHHCCCHHHHHHHHHHHCCCCE
T ss_conf 0699712121788888999876069977
No 216
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.029 Score=34.43 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 000002455420010--23564167751302334565555542-266630104899999999998665448814998538
Q gi|254780601|r 226 VALSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 226 v~~~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~-~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
|..+.|.++...++. ....+++||-+.....+..+.+.+.. .|.++..+|++++..+|.....+.++|+.+|+|.|=
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 77885899999999999975987999956534569999999998678745314657927899999998559715999712
Q ss_pred CCCCCCCCCCCCEEEEEC
Q ss_conf 650014578873389705
Q gi|254780601|r 303 VAARGIDLPDLELVIHAE 320 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d 320 (573)
-| -=.=++++.++|-.+
T Consensus 305 SA-lF~Pf~~LGLIIvDE 321 (730)
T COG1198 305 SA-LFLPFKNLGLIIVDE 321 (730)
T ss_pred HH-HCCCHHHCCEEEEEC
T ss_conf 23-307231257699702
No 217
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.74 E-value=0.17 Score=29.23 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=7.1
Q ss_pred EEEECCCCCHHHHHH
Q ss_conf 897058874789998
Q gi|254780601|r 316 VIHAELSSNPENLLH 330 (573)
Q Consensus 316 Vin~d~P~~~~~yvH 330 (573)
.|+|+.-.+-|+|+.
T Consensus 229 ~VqfhpsysYEDfi~ 243 (459)
T PRK11331 229 MVQFHQSYSYEDFIQ 243 (459)
T ss_pred EEEECCCCCHHHHHC
T ss_conf 998358866178764
No 218
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=95.58 E-value=0.19 Score=28.86 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=52.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH---C-CCCEEEEECCCCHHHHHHCCCCCCCCCE
Q ss_conf 27999849989999999999998544698799998899879999961---2-8975998223101332100012246431
Q gi|254780601|r 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---Q-NGAHIVVGTPGRLCDHIRGKGLNISHLK 150 (573)
Q Consensus 75 ~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l---~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~ 150 (573)
-++||.|++++.+..+++.+.. .++++..++|+.+..+....+ + ...+|+|+|. .+..| +++..+.
T Consensus 29 ~kviIF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~-----~~~~G-ldl~~~~ 98 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-----VIARG-IDLPNVS 98 (131)
T ss_pred CEEEEEECCHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEE-----CCEEC-CCCCCCC
T ss_conf 9099997889999999999955----899899998999999999999997754010488751-----12003-6610287
Q ss_pred EEEEECC
Q ss_conf 8999613
Q gi|254780601|r 151 AVVLDEA 157 (573)
Q Consensus 151 ~lVlDEa 157 (573)
++|+=+.
T Consensus 99 ~vI~~~~ 105 (131)
T cd00079 99 VVINYDL 105 (131)
T ss_pred EEEEECC
T ss_conf 9999789
No 219
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.54 E-value=0.057 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 123578887521433422563111
Q gi|254780601|r 165 FRDDIEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 165 f~~~i~~i~~~~p~~~q~~l~SAT 188 (573)
|.+++...+..+-..+..+++|-.
T Consensus 124 ~~~~~~~~L~~~v~~~~~ilIsG~ 147 (283)
T pfam00437 124 FDADIAEFLRQAVQARGNILVSGG 147 (283)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 859999999999981975999889
No 220
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.47 E-value=0.21 Score=28.59 Aligned_cols=213 Identities=14% Similarity=0.190 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 99889999999787987898999999999759969-99928987468999999999861042122556882799984998
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDV-LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~-i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
+.+...+.+.-.. ...+++=|..++.++..+.++ ++...-|+|||. +|-..-..... .+-.++=++|+-
T Consensus 366 ~V~~~~~~~a~~~-~~~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKSt--mL~aAReawEa-------~GyrV~GaALsG 435 (1102)
T PRK13826 366 GVREAVLAATFAR-HARLSDEQKTAIEHVAGAERIAAVIGRAGAGKTT--MMKAAREAWEA-------AGYRVVGGALAG 435 (1102)
T ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHH--HHHHHHHHHHH-------CCCEEEEECCCH
T ss_conf 8767899999850-2138999999999853788668998428887889--99999999997-------797798015007
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCH
Q ss_conf 99999999999985446987999988998799999612897599822310133210001224643189996131100100
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~g 164 (573)
-- ...|....|+...++ .-+..-..++...|+.=..||+|||-++ +
T Consensus 436 kA-------AegLe~~sGI~SrTl------------------------As~e~~w~~gr~~L~~~dVlVIDEAGMV-g-- 481 (1102)
T PRK13826 436 KA-------AEGLEKEAGIASRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMV-S-- 481 (1102)
T ss_pred HH-------HHHHHHCCCCCCHHH------------------------HHHHHHHCCCCCCCCCCCEEEEECCCCC-C--
T ss_conf 89-------997753469530338------------------------9999874358655678738998455565-5--
Q ss_pred HHHHHHHHHHHCC-CCCCEEEEECCC-------CCCCHHHHHH---------------HCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1235788875214-334225631111-------2220011112---------------1012333323332325665200
Q gi|254780601|r 165 FRDDIEFILDSSP-KKRRMLMFSATI-------SPAITTLAKN---------------YQKDAVRVNIASENRQHSDIDY 221 (573)
Q Consensus 165 f~~~i~~i~~~~p-~~~q~~l~SAT~-------~~~i~~l~~~---------------~~~~p~~i~~~~~~~~~~~i~~ 221 (573)
..++..+++..- ...+.+|..-.. ...+..|+++ ++++...- +... .+...+..
T Consensus 482 -srqmarvl~~ae~aGAKvVLVGD~~QLQpIeAGaaFrai~er~g~aeL~~IrRQr~~W~R~AS~~-lA~G-~v~~AL~a 558 (1102)
T PRK13826 482 -SRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREQWMRDASLD-LARG-NVGKALDA 558 (1102)
T ss_pred -HHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCHHHHHHHHHCCCEEHHHHHHHCCHHHHHHHHH-HHCC-CHHHHHHH
T ss_conf -79999999999975998999688788276104688999998638634455430040999999999-9759-88899999
Q ss_pred H---CCCCCCCHHHHHHHHCCC-----CCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 0---000000002455420010-----2356416775130233456555554
Q gi|254780601|r 222 R---AVLVALSDRDNAIVNILR-----YHGAKNAIVFCSTRASVSRFTKVLA 265 (573)
Q Consensus 222 ~---~~~v~~~~k~~~l~~ll~-----~~~~~~~ivF~~t~~~~~~l~~~L~ 265 (573)
+ -.......+.+++..++. ..+.+..||...|+.+|..|.+.+.
T Consensus 559 Y~~~G~v~~~~tr~ea~~~lv~~W~~d~~p~~~~LiLA~tn~DV~~LN~~aR 610 (1102)
T PRK13826 559 YRANGRMIGSRLKAEAVESLIADWNRDYDPTKTTLILAHLRRDVRMLNEMAR 610 (1102)
T ss_pred HHHCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 9976996404789999999999986413877657998445688999999999
No 221
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.44 E-value=0.17 Score=29.17 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 431899961311001001235788875214334225631111
Q gi|254780601|r 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189 (573)
Q Consensus 148 ~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~ 189 (573)
..+.+|+||||.|-. .-+..+.++++..|+....+| .++.
T Consensus 101 ~~kiiiiDE~d~l~~-~aq~aL~~~mE~~~~~~~fil-~~n~ 140 (318)
T PRK00440 101 PFKIIFLDEADNLTS-DAQQALRRTMEMYSQTTRFIL-SCNY 140 (318)
T ss_pred CEEEEEEECCCCCCH-HHHHHHHHHHHCCCCCCEEEE-ECCC
T ss_conf 738999868553225-567888764310566625886-3488
No 222
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.41 E-value=0.22 Score=28.47 Aligned_cols=127 Identities=13% Similarity=0.207 Sum_probs=62.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 99992898746899999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~ 119 (573)
++...+||+|||..-+ =+..++.... ..-+||=+=|.=-|- .++++.++...++.+.......+...-..
T Consensus 78 I~lvG~~G~GKTTT~A-KLA~~~~~~~-------~kV~lia~DtyR~aA--~eQLk~~a~~l~v~~~~~~~~~~~~~~~~ 147 (270)
T PRK06731 78 IALIGPTGVGKTTTLA-KMAWQFHGKK-------KTVGFITTDHSRIGT--VQQLQDYVKTIGFEVIAVRDEAAMTRALT 147 (270)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHCC-------CEEEEEEECCCCHHH--HHHHHHHHHHHCCCEECCCCHHHHHHHHH
T ss_conf 9998889898899999-9999998679-------908999838888889--99999999981995354588789999999
Q ss_pred HHC--CCCE-EEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHH
Q ss_conf 612--8975-9982231013321000122464318999613110010012357888752143342256311112-22001
Q gi|254780601|r 120 DLQ--NGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITT 195 (573)
Q Consensus 120 ~l~--~~~~-iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~-~~i~~ 195 (573)
.++ .++| |+|=|.||... |+ ...+++..++.....+...+..+||+. .+..+
T Consensus 148 ~~~~~~~~DvilIDTAGR~~~-----------------d~-------~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~ 203 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYR-----------------AS-------ETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred HHHHHCCCCEEEEECCCCCCC-----------------CH-------HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 999976999999979998714-----------------69-------999999998606389879999868777699999
Q ss_pred HHHHH
Q ss_conf 11121
Q gi|254780601|r 196 LAKNY 200 (573)
Q Consensus 196 l~~~~ 200 (573)
.++.|
T Consensus 204 ~~~~f 208 (270)
T PRK06731 204 IITNF 208 (270)
T ss_pred HHHHH
T ss_conf 99980
No 223
>PRK04195 replication factor C large subunit; Provisional
Probab=95.35 E-value=0.11 Score=30.48 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCC---CHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 431899961311001---00123578887521433422563111
Q gi|254780601|r 148 HLKAVVLDEADEMLD---LGFRDDIEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 148 ~v~~lVlDEaD~ml~---~gf~~~i~~i~~~~p~~~q~~l~SAT 188 (573)
.-+.+|+||+|.|.. .|....+..+++ +.++-+.|-|+
T Consensus 99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik---~s~~PiIli~N 139 (403)
T PRK04195 99 KRKLILLDEVDGIHGNADRGGVRAILEIIK---KAKNPIILTAN 139 (403)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEEEC
T ss_conf 734999634344572444799999999985---48870899826
No 224
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.33 E-value=0.12 Score=30.20 Aligned_cols=69 Identities=22% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 7898999999999759969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
.++|-|.+|+-. .+..+++.|..|||||-.-.-=+...|... ... .-+.|+|+-|+.-|...-+-+..+
T Consensus 2 ~Ln~~Q~~AV~~--~~gp~lVlAGaGSGKT~tLt~Ria~Li~~~--~v~---P~~ILalTFT~kAA~Emk~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQ---ARHIAAVTFTNKAAREMKERVGQT 70 (672)
T ss_pred CCCHHHHHHHCC--CCCCEEEEECCCHHHHHHHHHHHHHHHHCC--CCC---CCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 999899999839--999989997385587999999999998668--989---333854421799999999999977
No 225
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.2 Score=28.79 Aligned_cols=103 Identities=25% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9999759---9699992898746899999999986104212255688279998499899999999999985446987999
Q gi|254780601|r 31 LNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107 (573)
Q Consensus 31 ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~ 107 (573)
+-+++.| .++++-.+||||||+.- --+++.+........ .+=|=|..--=-.||+. ++....+ .+ +
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~~~~~~~-----~~yINc~~~~t~~~i~~---~i~~~~~-~~-p 101 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV-KFVMEELEESSANVE-----VVYINCLELRTPYQVLS---KILNKLG-KV-P 101 (366)
T ss_pred HHHHHCCCCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCCCCC-----EEEEEEEECCCHHHHHH---HHHHHHC-CC-C
T ss_conf 999855899860799889998732899-999999973315675-----79995130787879999---9999826-89-9
Q ss_pred EECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 98899879999961289759982231013321000122464318999613110010
Q gi|254780601|r 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163 (573)
Q Consensus 108 ~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~ 163 (573)
. -|.+..+-.. ++.+++.. ....-.+||||.|.|++-
T Consensus 102 ~-~g~~~~~~~~--------------~l~~~~~~----~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 102 L-TGDSSLEILK--------------RLYDNLSK----KGKTVIVILDEVDALVDK 138 (366)
T ss_pred C-CCCCHHHHHH--------------HHHHHHHH----CCCEEEEEECCHHHHHCC
T ss_conf 7-6763268999--------------99997774----187599997647654154
No 226
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.24 E-value=0.1 Score=30.75 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=45.2
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 122464318999613110010012--357888752143342256311112220011112
Q gi|254780601|r 143 GLNISHLKAVVLDEADEMLDLGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 143 ~l~l~~v~~lVlDEaD~ml~~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
.+.-.....+||||.--.++.||. ++|-.+++.-|+..-.+|..=..|+++.++|..
T Consensus 110 ~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~evVLTGR~ap~eLie~ADl 168 (178)
T PRK07414 110 VVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQ 168 (178)
T ss_pred HHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 98688988899703689987699259999999981899988999699999999998548
No 227
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.17 E-value=0.034 Score=33.93 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCCCEEEEECCCHHHH----HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCCCCE
Q ss_conf 23564167751302334----565555542266630104899999999998665448814998538-6500145788733
Q gi|254780601|r 241 YHGAKNAIVFCSTRASV----SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD-VAARGIDLPDLEL 315 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~----~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD-vaaRGiDi~~v~~ 315 (573)
+....++-.-+.|---+ +.+.++|...|+++..|.|.+...+|..+++...+|.+.++|-|- +..-.+|+.++.+
T Consensus 353 i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef~~L~l 432 (721)
T TIGR00643 353 IESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEFKRLGL 432 (721)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCE
T ss_conf 84698099917768999999999999623548578886156678789999999863952057331355452144314774
Q ss_pred EEEECCCCCHHHHHHHHCCC
Q ss_conf 89705887478999860301
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRT 335 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRt 335 (573)
||-=+ -||=|=-
T Consensus 433 VIiDE--------QHRFGV~ 444 (721)
T TIGR00643 433 VIIDE--------QHRFGVE 444 (721)
T ss_pred EEEEC--------CCCCHHH
T ss_conf 89932--------3356078
No 228
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.14 E-value=0.14 Score=29.76 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=44.0
Q ss_pred CCCCEEEEEECCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 464318999613110010012--357888752143342256311112220011112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
-....++||||.--+|..|+. ++|..+++.-|.....++..-.+|+++.+++..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 88878899721268887388879999999955998767999799999899998777
No 229
>KOG0388 consensus
Probab=95.04 E-value=0.13 Score=29.92 Aligned_cols=119 Identities=14% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCC
Q ss_conf 2455420010--2356416775130233456555554226663010489999999999866544881-499853865001
Q gi|254780601|r 231 RDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA-RVCIATDVAARG 307 (573)
Q Consensus 231 k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~-~vLV~TDvaaRG 307 (573)
|+..|-.||. .....++++|+.--+..+-+-++|..+||.-..|.|......|..++.+|....+ -+|.+|-...-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred CEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 43639989898641782588215798999999999876046069855754046788888633577558999740467662
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCE--EEEEEC
Q ss_conf 457887338970588747899986030103788860--256405
Q gi|254780601|r 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIP 349 (573)
Q Consensus 308 iDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~--ai~l~~ 349 (573)
|++...+.||-||--.++..-.+-..|+-|.|++-. ++-|++
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 01112424899448899632167788887506754304565200
No 230
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.3 Score=27.63 Aligned_cols=133 Identities=22% Similarity=0.294 Sum_probs=53.4
Q ss_pred CEEEECCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCCC-EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 699992898746-8999999999861042122556882-79998499899999999999985446987999988998799
Q gi|254780601|r 39 DVLVSAQTGSGK-TVAFGLALASTLLAENDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116 (573)
Q Consensus 39 d~i~~a~TGsGK-T~af~lp~l~~l~~~~~~~~~~~~~-~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~ 116 (573)
-.+...|-|+|| |+||.+. ..|+...... ..| ...-.+|....+.|+. ......+..+.-..+ .
T Consensus 47 A~Lf~GP~GiGKaTlA~~~A--~~Ll~~~~~~---~~~~~~~~pd~~~~~~r~i~-------~g~hpdl~~i~r~~d--~ 112 (352)
T PRK09112 47 ALLFEGPEGIGKATLAFHLA--NHILSHPDPN---EAPETLADPDPASPLWRQIA-------QGAHPNLLHLTRPFD--E 112 (352)
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHCCCCCC---CCCCCCCCCCCCCHHHHHHH-------CCCCCCEEEEECCCC--H
T ss_conf 46535899808999999999--9986699866---68655678887877899997-------489999565534322--0
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCC
Q ss_conf 999612897599822310133210001224643189996131100100123578887521--4334225631111222
Q gi|254780601|r 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPA 192 (573)
Q Consensus 117 q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~ 192 (573)
.....+. .|-|-.--.+...+.... .-+.-|.+||||||.|=. +.-+.+|+.+ |..+-+.++-+|-|..
T Consensus 113 k~~~~~~--~I~vd~iR~l~~~~~~~~-~~~~~kv~Iid~ad~m~~----~aaNALLK~LEEPp~~~~fiLit~~~~~ 183 (352)
T PRK09112 113 KTGKFKT--AITVDEIRRVTHFLSQTS-GDGNWRIVIIDPADDMNR----NAANAILKTLEEPPARALFILISHSSGR 183 (352)
T ss_pred HHHHHHC--CCCHHHHHHHHHHHCCCC-CCCCEEEEEECCHHHHHH----HHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 2145433--577799999999845488-668806999818787469----9999999985348987489988699777
No 231
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.96 E-value=0.055 Score=32.55 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=28.2
Q ss_pred CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCC
Q ss_conf 759982231013321000122464318999613110010012357888752143--3422563111122
Q gi|254780601|r 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191 (573)
Q Consensus 125 ~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~--~~q~~l~SAT~~~ 191 (573)
.||.|-.|+++.=-- .+.+. ....-.+||+.. ..-++.|...+.. +.+.-+.+|-+|.
T Consensus 60 ~dImVn~~~~v~v~~-~~~~~--~t~irf~d~~~l------~~ii~ria~~vgrriD~~~P~~darLpd 119 (355)
T COG4962 60 EDIMVNGPGRVFVER-KGGLE--PTDIRFLDEAAL------LRIIQRIAAAVGRRIDESQPIVDARLPD 119 (355)
T ss_pred EEEEECCCCCEEEEE-CCCCC--CCCCCCCCHHHH------HHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 168862787389993-27454--578624898999------9999999998588104689636526798
No 232
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=94.95 E-value=0.021 Score=35.33 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=35.7
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 9999997599699992898746899999999986104212255688279998499899999
Q gi|254780601|r 29 AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ 89 (573)
Q Consensus 29 ~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Q 89 (573)
..||.-.+-+++++.++||||||..| .+++..+..... .++|+=|.-|+...
T Consensus 7 ~~ip~~~~~~H~lviG~tGsGKT~~i-~~~i~~~~~~~~--------s~iv~DpKGe~~~~ 58 (386)
T pfam10412 7 VPLPRRSETQHILIVGTTGTGKTQAL-RELLDQIRARGD--------RAIIYDPTGTFVER 58 (386)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHHCCC--------CEEEEECCCHHHHH
T ss_conf 42678877675899889999888799-999999997799--------19999587368898
No 233
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=94.94 E-value=0.11 Score=30.45 Aligned_cols=111 Identities=22% Similarity=0.290 Sum_probs=64.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--HHH
Q ss_conf 999928987468999999999861042122556882799984998999999999999854469879999889987--999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HRE 117 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~--~~q 117 (573)
-+=..+=||||| -+.||....-++ . .||-|=|.| ++.+..+..+..+-|.-+ .|+|- .++
T Consensus 39 YLF~GpRGtGKT------S~ARIfAKaLNC--------~--~~~~~PCn~-C~~C~~i~~g~~~DviEi-DAASN~gVD~ 100 (363)
T TIGR02397 39 YLFSGPRGTGKT------SIARIFAKALNC--------Q--GPDGEPCNE-CESCKEINSGSSLDVIEI-DAASNNGVDD 100 (363)
T ss_pred EEECCCCCCCHH------HHHHHHHHHHCC--------C--CCCCCCCCC-CCHHHHHHCCCCCCEEEE-CCCCCCCHHH
T ss_conf 450285997635------589999998658--------8--787787777-502277652898666886-4865687889
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECC
Q ss_conf 99612897599822310133210001224643189996131100100123578887521--433422563111
Q gi|254780601|r 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSAT 188 (573)
Q Consensus 118 ~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT 188 (573)
+|.|... |-=.| ..++-|..|+||+- ||..+ ..+++||-+ |+. .+++.=||
T Consensus 101 IR~l~e~---v~y~P------------~~~kYKvYIIDEVH-MLS~~---AFNALLKTLEEPP~-hV~FIlAT 153 (363)
T TIGR02397 101 IRELREN---VKYAP------------SKGKYKVYIIDEVH-MLSKS---AFNALLKTLEEPPE-HVVFILAT 153 (363)
T ss_pred HHHHHHH---HCCCC------------CCCCCCEEEEECCC-CCCHH---HHHHHHHHHCCCCC-CEEEEEEC
T ss_conf 9999873---03687------------55443358873230-28656---89998765227987-62888734
No 234
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.85 E-value=0.15 Score=29.59 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=62.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-H
Q ss_conf 899999997879878989999999997599699992898746899999999986104212255688279998499899-9
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL-A 87 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL-a 87 (573)
+++.+.+...|...|.|-=-..+--+-.|.=+++.|.||+||| +|++-++-++.... +..+++++. |. .
T Consensus 2 ~~~~~~~~~~~~~~pf~~LD~~~~Gl~~GeL~viaarpg~GKT-~f~~~~a~~~~~~~-------g~~vl~~Sl--Em~~ 71 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKT-TFLREYALDLITQH-------GVRVGTISL--EEPV 71 (271)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHHHHC-------CCEEEEEEC--CCCH
T ss_conf 0441788755665881668887379999808999968998699-99999999999976-------990899970--4999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC-HHHH----HHHHCCCCEEEE-E-----CCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 99999999985446987999988998-7999----996128975998-2-----23101332100012246431899961
Q gi|254780601|r 88 VQVGRELEWLYAKTGVVVAVCIGGVS-VHRE----RRDLQNGAHIVV-G-----TPGRLCDHIRGKGLNISHLKAVVLDE 156 (573)
Q Consensus 88 ~Qv~~~~~~l~~~~~~~v~~~~gg~~-~~~q----~~~l~~~~~iiv-~-----TPgrl~d~~~~~~l~l~~v~~lVlDE 156 (573)
.|+..-+ ++...++.......+.. ..++ ...+...+.+.+ - |+..+.+.+++- ..-..++++|||=
T Consensus 72 ~~~~~Rl--ls~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~-~~~~~~~~vvIDy 148 (271)
T cd01122 72 VRTARRL--LGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDN 148 (271)
T ss_pred HHHHHHH--HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHH-HHHCCCCEEEEEH
T ss_conf 9999999--999829971103446778099999999997079980887899998899999999999-9828998899831
Q ss_pred CCCCC
Q ss_conf 31100
Q gi|254780601|r 157 ADEML 161 (573)
Q Consensus 157 aD~ml 161 (573)
...|-
T Consensus 149 lqll~ 153 (271)
T cd01122 149 LSIMV 153 (271)
T ss_pred HHHCC
T ss_conf 78503
No 235
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.72 E-value=0.03 Score=34.30 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=70.1
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCC-------HHHHHHHHHHHH-CCCCCCEEEEECCCCCC---CHHHHHHHCCCCC
Q ss_conf 321000122464318999613110010-------012357888752-14334225631111222---0011112101233
Q gi|254780601|r 137 DHIRGKGLNISHLKAVVLDEADEMLDL-------GFRDDIEFILDS-SPKKRRMLMFSATISPA---ITTLAKNYQKDAV 205 (573)
Q Consensus 137 d~~~~~~l~l~~v~~lVlDEaD~ml~~-------gf~~~i~~i~~~-~p~~~q~~l~SAT~~~~---i~~l~~~~~~~p~ 205 (573)
|+-++|. +++++-+++++--+|.+. -=..+++.-|+. +-..+..+++.+|=+.. ++.|++..-++--
T Consensus 110 dy~~~G~--F~~ar~~~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER 187 (328)
T TIGR02788 110 DYEEKGF--FDTARAVVVPASTELSDKDEELLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPKDER 187 (328)
T ss_pred HHHHCCC--CCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9962798--54477763144344346899999998628887999999873891999906897189999999732762252
Q ss_pred CCCCCCCC----CCCCCCCHHCCCCC-CC--HH---HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH--CCC--CC
Q ss_conf 33233323----25665200000000-00--02---45542001023564167751302334565555542--266--63
Q gi|254780601|r 206 RVNIASEN----RQHSDIDYRAVLVA-LS--DR---DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE--HLF--QV 271 (573)
Q Consensus 206 ~i~~~~~~----~~~~~i~~~~~~v~-~~--~k---~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~--~g~--~~ 271 (573)
.|++.... ..|||.-|.+|--. .. .+ -+.|..-|.. .|++. |.. --.=.|..++++. -|+ +.
T Consensus 188 ~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~~vt~~~Ll~scLRM-rPDRI--~Lg-ELRG~Eaf~F~~~~nsGHpGsi 263 (328)
T TIGR02788 188 LITIEDTRELFLPHHPNKVHLFYSKGVGQGSAKVTPKDLLESCLRM-RPDRI--LLG-ELRGDEAFDFIRAVNSGHPGSI 263 (328)
T ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCC-CCCHH--HHH-HHCCHHHHHHHHHHCCCCCCCE
T ss_conf 7888520114788898645655346423443568989999997117-74057--674-3033257888875205988605
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--------CCEEEEEC
Q ss_conf 01048999999999986654488149985386500145788--------73389705
Q gi|254780601|r 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD--------LELVIHAE 320 (573)
Q Consensus 272 ~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~--------v~~Vin~d 320 (573)
..+|.+-++.. ++++ --||-..-++.|||... ||.|||+.
T Consensus 264 TT~HA~s~~~A----f~ql-----a~l~k~s~~g~gL~~~~I~~~~~~~iDiVvq~~ 311 (328)
T TIGR02788 264 TTVHAGSPEEA----FEQL-----ALLVKESQAGLGLDYADIVKLLREVIDIVVQLE 311 (328)
T ss_pred EEEEECCHHHH----HHHH-----HHHHHCCHHHCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 67871898999----9999-----998720254358888999977421144789963
No 236
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=94.72 E-value=0.34 Score=27.18 Aligned_cols=126 Identities=26% Similarity=0.303 Sum_probs=65.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH-
Q ss_conf 99992898746899999999986104212255688279998499-8999999999999854469879999889987999-
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT-RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE- 117 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT-rELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q- 117 (573)
+....|||+|||-+-+ =+..++.... ..-+||=+=| |-=| .++++.++...++.+..++.+.+...-
T Consensus 4 i~lvGptGvGKTTTia-KLAa~~~~~~-------~~V~lit~Dt~R~gA---~eQL~~ya~~l~v~~~~~~~~~d~~~~~ 72 (196)
T pfam00448 4 ILLVGLQGSGKTTTIA-KLAAYLKKQG-------KKVLLVAADTFRAAA---IEQLKQLAERLGVPVFGSGTGSDPAAVA 72 (196)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHCC-------CEEEEEECCCCCHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 9998999998899999-9999999779-------928999758776889---9999999986398178148777878999
Q ss_pred HHHH----CCCCE-EEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9961----28975-998223101332100012246431899961311001001235788875214334225631111222
Q gi|254780601|r 118 RRDL----QNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 (573)
Q Consensus 118 ~~~l----~~~~~-iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~ 192 (573)
.+.+ .++.| |+|=||||.-. |+. -.+++..++...+...-.+..|||...+
T Consensus 73 ~~~l~~~~~~~~D~IlIDTaGr~~~-----------------d~~-------~~~el~~~~~~~~~~~~~LVl~a~~~~~ 128 (196)
T pfam00448 73 FDAVEKAKAENYDVVLVDTAGRLQN-----------------DKN-------LMDELKKIKRVIAPDEVLLVLDATTGQN 128 (196)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC-----------------CHH-------HHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 9999998846899999989998747-----------------677-------8999999985228730289985677821
Q ss_pred CHHHHHHH
Q ss_conf 00111121
Q gi|254780601|r 193 ITTLAKNY 200 (573)
Q Consensus 193 i~~l~~~~ 200 (573)
....+..|
T Consensus 129 ~~~~~~~f 136 (196)
T pfam00448 129 ALNQAKAF 136 (196)
T ss_pred HHHHHHHH
T ss_conf 37899987
No 237
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.66 E-value=0.038 Score=33.65 Aligned_cols=170 Identities=22% Similarity=0.271 Sum_probs=90.5
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 99289874689999999998610421225568827999849989999999999998544698799998899879999961
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l 121 (573)
..|-.|||||+ +|+++. ..+ ...++++++.|..--..-...|
T Consensus 39 fmsspGSGKT~-----LiEk~~-------------------------------~~~--~~~~K~Avi~GD~~t~~DA~Rl 80 (225)
T TIGR00073 39 FMSSPGSGKTT-----LIEKLI-------------------------------ERL--DDEVKIAVIEGDVQTKNDADRL 80 (225)
T ss_pred ECCCCCCCHHH-----HHHHHH-------------------------------HHH--CCCCCEEEEECCHHHHHHHHHH
T ss_conf 02588611589-----999999-------------------------------984--5789789997553225569999
Q ss_pred C-CCCEEEEECCCCHHHHHHCCCCC--CCCCEEEEEECC-CCCCCCHHHHHHHHHHHH----CCCCCCEEEEECCCCCCC
Q ss_conf 2-89759982231013321000122--464318999613-110010012357888752----143342256311112220
Q gi|254780601|r 122 Q-NGAHIVVGTPGRLCDHIRGKGLN--ISHLKAVVLDEA-DEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAI 193 (573)
Q Consensus 122 ~-~~~~iiv~TPgrl~d~~~~~~l~--l~~v~~lVlDEa-D~ml~~gf~~~i~~i~~~----~p~~~q~~l~SAT~~~~i 193 (573)
+ .|+-++=-|-|+-+ ||+=.-+. ++.++-+=+||. |.| |+|-|-.+..- +-+..+.+|+|-|=-.+
T Consensus 81 R~~G~~a~~~nTGk~C-HLdA~mv~G~~~~L~~~~ld~~~DlL----~IENVGNLvCP~~FdLGe~~rVvllSVTEGdD- 154 (225)
T TIGR00073 81 RKYGVPAIQINTGKEC-HLDAHMVAGAIHALKDLPLDDISDLL----LIENVGNLVCPADFDLGEHMRVVLLSVTEGDD- 154 (225)
T ss_pred HHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCEE----EEEECCCCEECCCCCCCCCCEEEEEEECCCCC-
T ss_conf 8649868863688644-40166786587554216888714626----88644761006731123563079998658999-
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECC--CHHHHHHHHHHHHH
Q ss_conf 01111210123333233323256--652000000000002455420010235641677513--02334565555542
Q gi|254780601|r 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS--TRASVSRFTKVLAE 266 (573)
Q Consensus 194 ~~l~~~~~~~p~~i~~~~~~~~~--~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~--t~~~~~~l~~~L~~ 266 (573)
-. ++-|.......--... +-+.+.=+.+ +|... =+...+|.-.||-+. |-+..++..+||..
T Consensus 155 --k~---lKyP~~F~~Ad~~~inK~DL~~~v~~D~---ek~~~---d~~~~nP~a~Ii~~S~ktg~Gl~~w~~~l~~ 220 (225)
T TIGR00073 155 --KV---LKYPAMFKEADLILINKVDLAEAVGFDV---EKMKA---DARKINPEAEIILVSAKTGKGLDEWLEFLEG 220 (225)
T ss_pred --CC---CCCCHHHHHHHHHHHCHHHHHHHHCCCH---HHHHH---HHHHHCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf --65---4661588744456214788997707367---89999---9986289507998636897347899999998
No 238
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.63 E-value=0.17 Score=29.18 Aligned_cols=58 Identities=31% Similarity=0.388 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 878989999999997-59969999289874689999999998610421225568827999849989999
Q gi|254780601|r 21 VNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l-~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~ 88 (573)
...+|-|...+..++ .++++++..+||||||- ++=.+++.+... + +.+.+--++||..
T Consensus 8 G~~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTT-ll~al~~~i~~~-~--------rivtiEd~~El~l 66 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTT-LLNALLAFIPPD-E--------RIITIEDTAELQL 66 (186)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHCCCC-C--------CEEEECCCHHHCC
T ss_conf 999999999999999859989998999998999-999999613345-6--------4598415354047
No 239
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.61 E-value=0.29 Score=27.67 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=5.3
Q ss_pred EEEEECCCCHH
Q ss_conf 59982231013
Q gi|254780601|r 126 HIVVGTPGRLC 136 (573)
Q Consensus 126 ~iiv~TPgrl~ 136 (573)
+|.|--||+++
T Consensus 38 EI~iN~~~~Vw 48 (320)
T PRK13894 38 EIMLNADGKLW 48 (320)
T ss_pred EEEECCCCEEE
T ss_conf 99986999599
No 240
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.61 E-value=0.37 Score=27.01 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=64.2
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 787987898999999999759969-9992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDV-LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~-i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
+.+|. +++=|..++-.+..+.++ ++...-|+|||. +|-..-..... .+-.++=++||--- ..
T Consensus 342 ~~~~~-Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKSt--mL~aAReawEa-------~GyrV~GaALsGkA-------Ae 404 (992)
T PRK13889 342 ARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSA--MLGVAREAWEA-------AGYEVRGAALSGIA-------AE 404 (992)
T ss_pred HCCCC-CCHHHHHHHHHHCCCCCEEEEEECCCCCHHH--HHHHHHHHHHH-------CCCEEEEECCCHHH-------HH
T ss_conf 32688-7999999999864789758998338887889--99999999997-------79889811500689-------99
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 98544698799998899879999961289759982231013321000122464318999613110010012357888752
Q gi|254780601|r 96 WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175 (573)
Q Consensus 96 ~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~ 175 (573)
.|....++.. -|-..+..-..++...|..=..||||||-++ + ..++..+++.
T Consensus 405 gLe~~sGI~S------------------------rTlAs~e~~w~~g~~~L~~~dVlVVDEAGMV-g---SRqMarll~~ 456 (992)
T PRK13889 405 NLEGGSGIAS------------------------RTIASLEHGWGQGRDLLTARDVLVIDEAGMV-G---TRQLERVLSH 456 (992)
T ss_pred HHHHCCCCCC------------------------HHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-C---HHHHHHHHHH
T ss_conf 7653479431------------------------6799999987467334789858999676557-7---4999999999
Q ss_pred CC-CCCCEEEEE
Q ss_conf 14-334225631
Q gi|254780601|r 176 SP-KKRRMLMFS 186 (573)
Q Consensus 176 ~p-~~~q~~l~S 186 (573)
.- ...+.+|..
T Consensus 457 Ae~AGAKVVLVG 468 (992)
T PRK13889 457 AADAGAKVVLVG 468 (992)
T ss_pred HHHCCCEEEEEC
T ss_conf 998499899948
No 241
>KOG4439 consensus
Probab=94.60 E-value=0.33 Score=27.30 Aligned_cols=84 Identities=21% Similarity=0.297 Sum_probs=67.8
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH--CCCEEEEEECCCCC--CCCCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 5555422666301048999999999986654--48814998538650--0145788733897058874789998603010
Q gi|254780601|r 261 TKVLAEHLFQVVALSGELSQQERSNALQMMR--DGRARVCIATDVAA--RGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 (573)
Q Consensus 261 ~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr--~g~~~vLV~TDvaa--RGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg 336 (573)
...|...|+....+||...-.+|..+++.|. +|..+|++-. +.| -||++-+-+|+|..|+-.++.-=-+-+-|.-
T Consensus 763 ~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS-LtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIY 841 (901)
T KOG4439 763 RKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS-LTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIY 841 (901)
T ss_pred HHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 8887507713662057404067899999988604880599999-706741352035633899854668788899989999
Q ss_pred CCCCCCEEE
Q ss_conf 378886025
Q gi|254780601|r 337 RAGRKGMSV 345 (573)
Q Consensus 337 Rag~~G~ai 345 (573)
|.|++-..+
T Consensus 842 R~GQkK~V~ 850 (901)
T KOG4439 842 RMGQKKDVF 850 (901)
T ss_pred HHCCCCCEE
T ss_conf 842667258
No 242
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.58 E-value=0.064 Score=32.10 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=16.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH--CCCC--CCCCCCCCCHH
Q ss_conf 564167751302334565555542--2666--30104899999
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAE--HLFQ--VVALSGELSQQ 281 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~--~g~~--~~~lhg~~~q~ 281 (573)
.|.+ ||+.-... .+..++|+. -|+. ...+|.+-...
T Consensus 236 rPDR--IivGEvRG-~EA~d~L~A~nTGH~GsitTiHAnSa~~ 275 (343)
T PRK13851 236 RPDR--ILLGEMRD-DAAWAYLSEVVSGHPGSISTIHGANPVQ 275 (343)
T ss_pred CCCE--EEEEEECC-HHHHHHHHHHHCCCCCCCEEECCCCHHH
T ss_conf 9982--89985266-9999999998469998303356799999
No 243
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.57 E-value=0.057 Score=32.46 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=49.5
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 89999999-78798789899999999975996999928987468999999999861042122556882799984998999
Q gi|254780601|r 9 QVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 9 ~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
.+|.+.+. +.|-..|-.|=-.-||.-.+.+++++.+.||||||.++ .+++..+.... -.++|.=|.-|+.
T Consensus 13 ~~l~~~~~~~~~~~~~~~i~~~p~p~~~e~~H~lv~G~tGsGKT~~i-~~li~~~~~rg--------~~~II~DpkGe~~ 83 (410)
T cd01127 13 RKLARKLRKKDGKASPITIAGLPFPKDAEEAHTMIIGTTGTGKTTQI-RELLASIRARG--------DRAIIYDPNGGFV 83 (410)
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCEEEECCCCCCHHHHH-HHHHHHHHHCC--------CEEEEEECCCHHH
T ss_conf 99999999863899983689862786520274799889999889999-99999999869--------9099995885499
Q ss_pred HH
Q ss_conf 99
Q gi|254780601|r 88 VQ 89 (573)
Q Consensus 88 ~Q 89 (573)
..
T Consensus 84 ~~ 85 (410)
T cd01127 84 SK 85 (410)
T ss_pred HH
T ss_conf 99
No 244
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=94.54 E-value=0.18 Score=29.07 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH--HHHHHHHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 8987468999999-9998610421225568827999849989999999--999998544698799998899879999961
Q gi|254780601|r 45 QTGSGKTVAFGLA-LASTLLAENDRFSPASAPLALAIAPTRELAVQVG--RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 (573)
Q Consensus 45 ~TGsGKT~af~lp-~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~--~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l 121 (573)
+-|||||. +|= ++..+. .. +-.+++.+||-=-|.+|. ..+-++.. .++. + .. ..+
T Consensus 2 ~AGTGKS~--ll~~i~~~l~-~~-------~~~v~vtA~TGiAA~~i~gG~TiHs~~g-i~~~------~---~~--~~~ 59 (418)
T pfam05970 2 YGGTGKTF--LWNALSARIR-SR-------GKIVLNVASSGIAALLLPGGRTAHSRFG-IPLD------I---DE--DST 59 (418)
T ss_pred CCCCCHHH--HHHHHHHHHH-HC-------CCEEEEECCHHHHHHCCCCCEEHHHCCC-CCCC------C---CC--CCC
T ss_conf 79887999--9999999997-68-------9889998968999851699873985269-8988------7---74--201
Q ss_pred CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC--------CCCEEEEE
Q ss_conf 289759982231013321000122464318999613110010012357888752143--------34225631
Q gi|254780601|r 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--------KRRMLMFS 186 (573)
Q Consensus 122 ~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~--------~~q~~l~S 186 (573)
+.+. .. ..+. -.+.++++||+||+= |++--+.+-|+.+++.+-. ..|.+|+.
T Consensus 60 ---~~~~---~~--~~~~----~~~~~~~vLIIDEiS-Mv~~~lfd~id~~lr~i~~~~~~~PFGGiqvIl~G 119 (418)
T pfam05970 60 ---CKIK---RG--SKLA----ELLKKASLIIWDEAP-MTHRHCFEALDRTLRDILKNTDDKPFGGKTVVLGG 119 (418)
T ss_pred ---EEEC---CC--HHHH----HHHHHCCEEEEECCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf ---1213---37--7889----987408799985411-35789999999999998712787677974799824
No 245
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.53 E-value=0.016 Score=36.12 Aligned_cols=49 Identities=22% Similarity=0.034 Sum_probs=38.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+.+++.||||||||..|++|=|-.... -++|+=|-.|+....+...++.
T Consensus 158 eHvLliAPTrSGKGvG~VIPNLL~w~~-----------S~VV~DpKGEn~~~Tag~R~k~ 206 (628)
T PRK13897 158 QHALLFAPTGSGKGVGFVIPNLLFWED-----------SVVVHDIKLENYELTSGWREKQ 206 (628)
T ss_pred CEEEEECCCCCCCCCEEECCCCCCCCC-----------CEEEEECCHHHHHHHHHHHHHC
T ss_conf 369997889998872798312157999-----------8899977677999999999987
No 246
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.49 E-value=0.32 Score=27.40 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.7
Q ss_pred CEEEEECCCCHH
Q ss_conf 759982231013
Q gi|254780601|r 125 AHIVVGTPGRLC 136 (573)
Q Consensus 125 ~~iiv~TPgrl~ 136 (573)
.+|+|--||.++
T Consensus 32 tEI~iN~~~~Vw 43 (323)
T PRK13833 32 VEIMLNPDGKLF 43 (323)
T ss_pred EEEEECCCCEEE
T ss_conf 699983899599
No 247
>KOG1133 consensus
Probab=94.44 E-value=0.084 Score=31.32 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7898999999999----759969999289874689999999998610
Q gi|254780601|r 22 NLTSVQEAILNPD----LREKDVLVSAQTGSGKTVAFGLALASTLLA 64 (573)
Q Consensus 22 ~pt~iQ~~~ip~~----l~g~d~i~~a~TGsGKT~af~lp~l~~l~~ 64 (573)
+|..||..-+..+ -+|+=-|-.|||||||||+-+-..+.-|..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 82369999999999998537624675799888117899989899887
No 248
>KOG0243 consensus
Probab=94.43 E-value=0.043 Score=33.27 Aligned_cols=122 Identities=25% Similarity=0.222 Sum_probs=52.3
Q ss_pred CCHHHH----HHHHHH----HCCCCE--EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 898999----999999----759969--9992898746899999999986104212255688279998499899999999
Q gi|254780601|r 23 LTSVQE----AILNPD----LREKDV--LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGR 92 (573)
Q Consensus 23 pt~iQ~----~~ip~~----l~g~d~--i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~ 92 (573)
|..=|. +++.++ |.|.++ .+-.|||||||... ..........-.+-|= |.| | -..||++
T Consensus 105 pes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTM--------eG~~~~~~g~l~~~aG-IIP-R-al~~IFd 173 (1041)
T KOG0243 105 PESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTM--------EGGERKKNGELPSEAG-IIP-R-ALRQIFD 173 (1041)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEE--------ECCCCCCCCCCCCCCC-CCH-H-HHHHHHH
T ss_conf 526589999999889999986247725998647888852462--------3675434588996578-342-9-9999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHH----HCCCCCCCCCEEEEEECCCC
Q ss_conf 99998544698799998899879999961289759982231013321----00012246431899961311
Q gi|254780601|r 93 ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI----RGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 93 ~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~----~~~~l~l~~v~~lVlDEaD~ 159 (573)
.+...+....++|.-+ .=|.+++..|=.. +=..-.++|..|-- .+|.+-...+..+++-.||+
T Consensus 174 ~Le~~~~EYsvKVSfL---ELYNEEl~DLLa~-~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~e 240 (1041)
T KOG0243 174 TLEAQGAEYSVKVSFL---ELYNEELTDLLAS-EDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADE 240 (1041)
T ss_pred HHHHCCCEEEEEEEEH---HHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCHHH
T ss_conf 9984488179998742---6541788975388-65545213524577433786867974352665346568
No 249
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=94.41 E-value=0.022 Score=35.22 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=14.3
Q ss_pred HCCCCEEEECCCCCCHHH
Q ss_conf 759969999289874689
Q gi|254780601|r 35 LREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 35 l~g~d~i~~a~TGsGKT~ 52 (573)
|.-.|++...||||||||
T Consensus 150 L~KSNILLiGPTGSGKTL 167 (452)
T TIGR00382 150 LSKSNILLIGPTGSGKTL 167 (452)
T ss_pred HHCCCEEEECCCCCCHHH
T ss_conf 300662454688852689
No 250
>KOG1001 consensus
Probab=94.27 E-value=0.16 Score=29.35 Aligned_cols=109 Identities=27% Similarity=0.288 Sum_probs=59.9
Q ss_pred EEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 999289874689-9999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r 41 LVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 41 i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~ 119 (573)
|..---|-|||. ++.+.+.++..... ........-.||+||+--+ .|-..++.+......+.+...+|..... .
T Consensus 156 Iladd~glgkt~~ti~l~l~~~~~~~~-~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~gr~kd~---~ 230 (674)
T KOG1001 156 ILADDMGLGKTVKTIALILKQKLKSKE-EDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHGRTKDK---S 230 (674)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCC-HHHCCCCCCEEEECCHHHH-HHHHHHHHCCCCCCCEEEEEECCCCCCC---C
T ss_conf 676510141589999999964367710-2330246743696665888-8888887335886646999961642433---1
Q ss_pred HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 6128975998223101332100012246431899961311
Q gi|254780601|r 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
.| .+.|||+.|++-+.. ..+.--.-..+|+|||-.
T Consensus 231 el-~~~dvVltTy~il~~----~~l~~i~w~Riildea~~ 265 (674)
T KOG1001 231 EL-NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHT 265 (674)
T ss_pred HH-CCCCEEEEEHHHHHC----CCCCCEEEEEEEECCCCC
T ss_conf 34-177669933788515----350012578887012002
No 251
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.43 Score=26.52 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=26.7
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCH
Q ss_conf 4643189996131100100123578887521--433422563111122200
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAIT 194 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i~ 194 (573)
.+.-+.++|||||.|-. +....+++.+ |.....+++.+.-|..|.
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep~~~~~~il~~n~~~~il 153 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEPPKNTRFILITNDPSKIL 153 (325)
T ss_pred CCCCEEEEEECCCCCCH----HHHHHHHHHCCCCCCCEEEEEEECCHHHCH
T ss_conf 67726999732032698----888767543324888716999749855564
No 252
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.24 E-value=0.44 Score=26.48 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCCCCCHHHHHHHHHHH----CCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 79878989999999997----599-6999928987468999999999861042122556882799984998999999999
Q gi|254780601|r 19 GYVNLTSVQEAILNPDL----REK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~~l----~g~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~ 93 (573)
.|-.+++-.++++-.+. .++ =+++..+.|||||.. +=-+++.+..+ ....++|..|+-. ..+.
T Consensus 20 ~~~y~s~~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtl-lr~l~~~l~~~-------~~~~~~i~~~~l~----~~~l 87 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL-IRNLLKRLDQE-------RVVAAKLVNTRVD----AEDL 87 (269)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH-HHHHHHHCCCC-------CEEEEEECCCCCC----HHHH
T ss_conf 5414786699999999999964896599972998988999-99999845934-------5489997699999----9999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99985446987999988998799999612897599822310133210001224643189996131100100123578887
Q gi|254780601|r 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 (573)
Q Consensus 94 ~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~ 173 (573)
+..++...++.. .+.+.....+.|. +++.... .-..--.+|+|||..| +....+++..+.
T Consensus 88 l~~i~~~lg~~~----~~~~~~~~~~~l~--------------~~L~~~~-~~g~~~vliIDEAq~L-~~~~Le~Lr~L~ 147 (269)
T TIGR03015 88 LRMVAADFGLET----EGRDKAALLRELE--------------DFLIEQF-AAGKRALLVVDEAQNL-TPELLEELRMLS 147 (269)
T ss_pred HHHHHHHCCCCC----CCCCHHHHHHHHH--------------HHHHHHH-HCCCCEEEEEECHHHC-CHHHHHHHHHHH
T ss_conf 999999859898----8989999999999--------------9999999-6699469997242219-999999999997
Q ss_pred HHCCCC---CCEEEEE
Q ss_conf 521433---4225631
Q gi|254780601|r 174 DSSPKK---RRMLMFS 186 (573)
Q Consensus 174 ~~~p~~---~q~~l~S 186 (573)
..-.+. -|.+|+.
T Consensus 148 n~e~~~~~ll~iiL~G 163 (269)
T TIGR03015 148 NFQTDNAKLLQIFLVG 163 (269)
T ss_pred CCCCCCCCCEEEEEEC
T ss_conf 0135888704899957
No 253
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=94.21 E-value=0.15 Score=29.59 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=8.9
Q ss_pred CCEEEEECCCHHH
Q ss_conf 8279998499899
Q gi|254780601|r 74 APLALAIAPTREL 86 (573)
Q Consensus 74 ~~~~lil~PTrEL 86 (573)
..+.|+++|-|-.
T Consensus 115 ~~~llyvtPErl~ 127 (607)
T PRK11057 115 QIKLLYIAPERLM 127 (607)
T ss_pred CCCEEEECHHHHC
T ss_conf 9879998855856
No 254
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.19 E-value=0.26 Score=28.05 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCCHHHH
Q ss_conf 99699992898746899
Q gi|254780601|r 37 EKDVLVSAQTGSGKTVA 53 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~a 53 (573)
+.-+++.+++|||||..
T Consensus 2 ~~~ill~G~~GsGKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCHHHHHH
T ss_conf 97899999997029999
No 255
>KOG0333 consensus
Probab=94.13 E-value=0.46 Score=26.33 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=39.2
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHH----HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 00102356416775130233456555----5542266630104899999999998665448814998538
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTK----VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~----~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
.+++...+.+++|...|+.-+..+.+ ++.-.|+.+..+-|+++-++.-- +.+. -+.|+|||-
T Consensus 315 ~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f---qls~-gceiviatP 380 (673)
T KOG0333 315 RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF---QLSM-GCEIVIATP 380 (673)
T ss_pred HHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH---HHHC-CCEEEECCC
T ss_conf 44423468600120337999999999998750301432899854633665302---4641-541442474
No 256
>PRK13766 Hef nuclease; Provisional
Probab=93.95 E-value=0.5 Score=26.10 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 00000002455420010235641677513
Q gi|254780601|r 224 VLVALSDRDNAIVNILRYHGAKNAIVFCS 252 (573)
Q Consensus 224 ~~v~~~~k~~~l~~ll~~~~~~~~ivF~~ 252 (573)
+.|..++-...|.++|.. ...++..|+.
T Consensus 369 IFv~~R~Ta~~L~~~L~~-~~ik~~~fVG 396 (764)
T PRK13766 369 VFTQYRDTAEKIVDLLNK-NGIKAIRFVG 396 (764)
T ss_pred EEECCHHHHHHHHHHHHH-CCCCCEEEEE
T ss_conf 992767999999999865-8997228983
No 257
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=93.95 E-value=0.33 Score=27.34 Aligned_cols=169 Identities=19% Similarity=0.270 Sum_probs=98.3
Q ss_pred HHHHHHHCC--CCCCC----CEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 245542001--02356----4167751302334565555542----2666301048999999999986654488149985
Q gi|254780601|r 231 RDNAIVNIL--RYHGA----KNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 (573)
Q Consensus 231 k~~~l~~ll--~~~~~----~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~ 300 (573)
|.++-.+-. -..+. ++++|-+.|---|+.=.+.+.+ .++++..|++=.+.++...+++..++|+++|||-
T Consensus 542 KTEVAmRAaFkAv~~gneylKQVavLVPTT~LA~QHf~tf~~RF~~fPv~I~~LSRF~~~~E~~~iL~~la~G~iDI~IG 621 (997)
T TIGR00580 542 KTEVAMRAAFKAVLDGNEYLKQVAVLVPTTILAQQHFETFKERFANFPVTIELLSRFRSAKEKKEILKELASGKIDILIG 621 (997)
T ss_pred HHHHHHHHHHHHHCCCCCEECEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 36888878887633878220116896270442777889999973789816875277567378999999975594226630
Q ss_pred CC-CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH-HCCCCCCCCCCHHHH
Q ss_conf 38-6500145788733897058874789998603010378886025640599999999999985-066410568999998
Q gi|254780601|r 301 TD-VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA-NVSVVWEPAPSVEAI 378 (573)
Q Consensus 301 TD-vaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~-~~~~~~~~~Ps~eeI 378 (573)
|- |+.-.+-+.|+.++|- |-| | |+|-+ ++..+|.+-... =..+...|+|--=.+
T Consensus 622 TH~lL~k~v~FKdLGLlIi-----DEE---Q------RFGV~----------~KE~lK~~~~~VDvLtlsATPIPRTL~M 677 (997)
T TIGR00580 622 THKLLQKDVKFKDLGLLII-----DEE---Q------RFGVK----------QKEKLKELKTSVDVLTLSATPIPRTLHM 677 (997)
T ss_pred CHHHHCCCEEEECCCCEEE-----ECC---C------CCCCC----------HHHHHCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 1041278546863864698-----314---3------48831----------1555300156765676337896055899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCC
Q ss_conf 88899865544310122204557766666542004789999999-862011
Q gi|254780601|r 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHRAGL 428 (573)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~e~Ll~~~dpe~IAaALlk-l~~~~~ 428 (573)
. +..+- + +..=..-...|--++..+.+|+++-|+.|+.+ +.+++.
T Consensus 678 S---l~g~R-d-lS~I~TPP~~R~pv~T~v~~~~~~~~~~AI~rEL~RgGQ 723 (997)
T TIGR00580 678 S---LSGIR-D-LSIIATPPEDRLPVRTFVMEYDDELVREAIRRELLRGGQ 723 (997)
T ss_pred H---HHHHH-H-HHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCE
T ss_conf 9---87553-3-221057888774248877427868999999975313981
No 258
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.74 E-value=0.14 Score=29.91 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=16.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH--CCCC--CCCCCCCCCHHH
Q ss_conf 564167751302334565555542--2666--301048999999
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAE--HLFQ--VVALSGELSQQE 282 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~--~g~~--~~~lhg~~~q~~ 282 (573)
.|.+.|| -.. .. .+..+.|.. .|+. ...+|++-.+..
T Consensus 235 rPDRIiv-GEv-RG-~EA~~~l~A~nTGH~Gs~tTiHA~sa~~a 275 (332)
T PRK13900 235 RPDRIIV-GEL-RG-AEAFSFLRAINTGHPGSISTLHADSPAMA 275 (332)
T ss_pred CCCEEEE-CCC-CH-HHHHHHHHHHHCCCCCCEECCCCCCHHHH
T ss_conf 9975844-555-71-99999999997699971146278999999
No 259
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.62 E-value=0.28 Score=27.74 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=43.7
Q ss_pred CCCCCCEEEEEECCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 22464318999613110010012--35788875214334225631111222001111
Q gi|254780601|r 144 LNISHLKAVVLDEADEMLDLGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 (573)
Q Consensus 144 l~l~~v~~lVlDEaD~ml~~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~ 198 (573)
+.-.....+||||.--.++.|+. +++..+++.-|.....+|..=..|+++.+++.
T Consensus 91 l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~evVlTGr~~p~~L~e~AD 147 (159)
T cd00561 91 IASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCC
T ss_conf 868898999736689999859917999999998489997899969999999998575
No 260
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.60 E-value=0.55 Score=25.83 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 87898999999999759969999289874689999999998610421225568827999849989999999999998544
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~ 100 (573)
..+|+=|+.|+ +.....+++.|.-|||||-.-.-=+...|.... ...-+.|.|+=|+.-|.-..+-+......
T Consensus 195 ~PLn~~Qr~Av--i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~-----~~P~~ILaLTFT~kAA~EMreRl~~~lg~ 267 (684)
T PRK11054 195 SPLNPSQARAV--VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRKAAEEMDERIRERLGT 267 (684)
T ss_pred CCCCHHHHHHE--EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCHHHEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99998999572--747996489833899707799999999997599-----98667786863499999999999975499
Q ss_pred CCCEEEEE
Q ss_conf 69879999
Q gi|254780601|r 101 TGVVVAVC 108 (573)
Q Consensus 101 ~~~~v~~~ 108 (573)
.++.+.+.
T Consensus 268 ~~v~~~TF 275 (684)
T PRK11054 268 EDITARTF 275 (684)
T ss_pred CCEEEEEH
T ss_conf 98378659
No 261
>KOG4439 consensus
Probab=93.43 E-value=0.61 Score=25.51 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 898999999999759-----96999928987468999999999-861042122556882799984998999999999999
Q gi|254780601|r 23 LTSVQEAILNPDLRE-----KDVLVSAQTGSGKTVAFGLALAS-TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g-----~d~i~~a~TGsGKT~af~lp~l~-~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
+.|-|.+++-+++.. .--|+.-.-|-|||+...--++. +......+......-..||+||-+ |--|-+.++..
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~~ 404 (901)
T KOG4439 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVAR 404 (901)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHH-HHHHHHHHHHH
T ss_conf 45146654143100134799986502133455306799999988999875414456557728867399-99988999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHH----HHHCC-CC-CCCCCE--EEEEECCCCC
Q ss_conf 85446987999988998799999612897599822310133----21000-12-246431--8999613110
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD----HIRGK-GL-NISHLK--AVVLDEADEM 160 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d----~~~~~-~l-~l~~v~--~lVlDEaD~m 160 (573)
-...-.++|...+|----+-..+.|.+ -||||.|=-=+.. -.+.+ +. -|.+|. .+|||||--.
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L~~-YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~I 475 (901)
T KOG4439 405 RLEQNALSVYLYHGPNKREISAKELRK-YDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNI 475 (901)
T ss_pred HHHHCCEEEEEECCCCCCCCCHHHHHH-CCEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 986350079986178615478888732-56699852110157730333156742777756777534245541
No 262
>PRK10436 hypothetical protein; Provisional
Probab=93.42 E-value=0.19 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=11.1
Q ss_pred CCCEEEEEECCCCCC---CCHHHHHHHHHH
Q ss_conf 643189996131100---100123578887
Q gi|254780601|r 147 SHLKAVVLDEADEML---DLGFRDDIEFIL 173 (573)
Q Consensus 147 ~~v~~lVlDEaD~ml---~~gf~~~i~~i~ 173 (573)
+++-.=+||.....+ ++||-++....+
T Consensus 178 E~ivlRlL~~~~~~~~L~~LG~~~~~~~~~ 207 (461)
T PRK10436 178 EKVVLRLLQQVQQTLDLETLGMTPAQLAQF 207 (461)
T ss_pred CEEEEEEECCCCCCCCHHHHCCCHHHHHHH
T ss_conf 778999524665668887848899999999
No 263
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.40 E-value=0.62 Score=25.48 Aligned_cols=93 Identities=25% Similarity=0.244 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCCCH----HHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 89999999787987898----9999999997--59969999289874689999999998610421225568827999849
Q gi|254780601|r 9 QVIGEALSERGYVNLTS----VQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~----iQ~~~ip~~l--~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P 82 (573)
+-|.++|++.-=.++-. ||..-=..|- .++=+|+|.-.|||||.+-+=-+...+..- +.. ..+-++||+.|
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~--R~~-l~~k~vlvl~P 268 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGY--RGP-LQAKPVLVLGP 268 (747)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--CCC-CCCCCEEEECC
T ss_conf 999999986263127789998617677787555787489955888871358899999998535--662-46686599828
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 98999999999999854469879
Q gi|254780601|r 83 TRELAVQVGRELEWLYAKTGVVV 105 (573)
Q Consensus 83 TrELa~Qv~~~~~~l~~~~~~~v 105 (573)
.|-+..-|..++-.|+.. ++..
T Consensus 269 N~vFleYis~VLPeLGe~-~V~q 290 (747)
T COG3973 269 NRVFLEYISRVLPELGEE-GVVQ 290 (747)
T ss_pred CHHHHHHHHHHCHHHCCC-CEEE
T ss_conf 389999998755441668-6365
No 264
>pfam05876 Terminase_GpA Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.
Probab=93.30 E-value=0.56 Score=25.78 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH-HHHHH
Q ss_conf 7898999999999759--96999928987468999999999861042122556882799984998999999999-99985
Q gi|254780601|r 22 NLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLY 98 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g--~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~-~~~l~ 98 (573)
.-||-|..-+-.+-.. +.|+++..+-+|||...+--+-..|.... + -+|++.||.++|....+. +..+-
T Consensus 16 ~~~Py~~eimd~l~~~~v~~V~~~k~aQ~GkT~~~~n~igy~i~~~P-------~-p~l~v~Pt~~~a~~~s~~rl~Pmi 87 (552)
T pfam05876 16 DRTPYLREIMDALSPPSVERVVFMKSAQVGKTELLLNWIGYFIDHDP-------A-PMLVVQPTDDDAKRFSKDRLDPMI 87 (552)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------C-CEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 88807699998548878449999957870388999999988663089-------8-879994189999999999899998
Q ss_pred HH---CCCEEEEEE---CCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 44---698799998---8998799999612897599822310133210001224643189996131100
Q gi|254780601|r 99 AK---TGVVVAVCI---GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 99 ~~---~~~~v~~~~---gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml 161 (573)
.. +.-++.... ++..+ ..+....| .|.+..-+- -..|.-..++++++||.|++-
T Consensus 88 ~~sP~L~~~~~~~~~r~~~nt~--~~K~f~gg-~l~~~ga~S------~~~L~s~~~r~l~~DEvD~~~ 147 (552)
T pfam05876 88 RASPALRERLAPARSRDSDNTL--LSKRFPGG-SLLLIGANS------PANLRSRPVRYVILDEVDAYP 147 (552)
T ss_pred HCCHHHHHHHCCCCCCCCCCCE--EEEEECCC-EEEEEECCC------CHHHHCCCCCEEEECCHHHCC
T ss_conf 6198999750755565667741--24760783-799955799------614304863558851344365
No 265
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=93.11 E-value=0.087 Score=31.21 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=7.3
Q ss_pred CCEEEEECCCCHHHHHH
Q ss_conf 97599822310133210
Q gi|254780601|r 124 GAHIVVGTPGRLCDHIR 140 (573)
Q Consensus 124 ~~~iiv~TPgrl~d~~~ 140 (573)
.+.+..+|+-.+.+.++
T Consensus 49 ~~~l~~~~~~~~~~~~~ 65 (495)
T TIGR02533 49 AVELIIATASEIDDAIN 65 (495)
T ss_pred CCEECCCCHHHHHHHHH
T ss_conf 20000168478999999
No 266
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=92.98 E-value=0.71 Score=25.06 Aligned_cols=236 Identities=12% Similarity=0.086 Sum_probs=103.8
Q ss_pred EEEECCCCCCHHHHHH--------------HHHHHHHHCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 9999289874689999--------------99999861042122556882799984-998999999999999854-4698
Q gi|254780601|r 40 VLVSAQTGSGKTVAFG--------------LALASTLLAENDRFSPASAPLALAIA-PTRELAVQVGRELEWLYA-KTGV 103 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~--------------lp~l~~l~~~~~~~~~~~~~~~lil~-PTrELa~Qv~~~~~~l~~-~~~~ 103 (573)
+|+....|+|||.|-- +.++..+.............-|+++- -+++...+..+.+..+.. ...+
T Consensus 4 viVTGlSGAGKStAl~~LED~Gy~cvDNlP~~Ll~~~~~~~~~~~~~~~~lAi~iD~R~~~~~~~~~~~~~~l~~~~~~~ 83 (284)
T pfam03668 4 VIITGRSGAGKSVALRALEDLGYYCVDNLPPQLLPRLVDFLLAAGSRISSVAVVMDVRNRPFSGDLDEQRNELATRAITP 83 (284)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99957997779999999981892477588999999999998624787652689996366533376999999998669982
Q ss_pred EEEEEECCCCHHHHH--HHHCCCCEEEEECCCCHHHHHHCC--CCC-CCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCC
Q ss_conf 799998899879999--961289759982231013321000--122-464318999613110010-01235788875214
Q gi|254780601|r 104 VVAVCIGGVSVHRER--RDLQNGAHIVVGTPGRLCDHIRGK--GLN-ISHLKAVVLDEADEMLDL-GFRDDIEFILDSSP 177 (573)
Q Consensus 104 ~v~~~~gg~~~~~q~--~~l~~~~~iiv~TPgrl~d~~~~~--~l~-l~~v~~lVlDEaD~ml~~-gf~~~i~~i~~~~p 177 (573)
++ +|=.++-+.=+ -+--+.+|=+ +.-+.+++-|.+. .|. +...--+|+|--+ |+. .+++.|...+..-.
T Consensus 84 ~i--lFLdA~~~~LirRy~eTRR~HPL-~~~~~~leaI~~Er~~L~~lr~~Ad~vIDTS~--l~~~~Lr~~i~~~~~~~~ 158 (284)
T pfam03668 84 RI--LFLEADDDTLVRRYSDTRRSHPL-SGKQLSLEGIAAERRLLEPLRARADLIIDTST--LSVHGLRESIRRAFGGNG 158 (284)
T ss_pred EE--EEEECCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCEEEECCC--CCHHHHHHHHHHHHCCCC
T ss_conf 69--99978808999988873688998-88898699999999999999962659985689--999999999999864688
Q ss_pred CC-CCEEEEECCC----CCCCHH-HHHHHCCCCCCCCCCCCCCCC-CCCCHHCCCCCCC----HHHH-HHHHCCC----C
Q ss_conf 33-4225631111----222001-111210123333233323256-6520000000000----0245-5420010----2
Q gi|254780601|r 178 KK-RRMLMFSATI----SPAITT-LAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALS----DRDN-AIVNILR----Y 241 (573)
Q Consensus 178 ~~-~q~~l~SAT~----~~~i~~-l~~~~~~~p~~i~~~~~~~~~-~~i~~~~~~v~~~----~k~~-~l~~ll~----~ 241 (573)
.. -...+.|=-+ |.+..- +=-+|+.||-++.--...... +.|..+...-+.. +++. .|..++. .
T Consensus 159 ~~~l~i~i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~LR~lTG~D~~V~~yv~~~~~~~~f~~~i~~ll~~~lp~y~~e 238 (284)
T pfam03668 159 GATLTVTVESFGFKYGIPIDADYVFDVRFLPNPHWDPELRPLTGLDKPVADYVLHHTEVAEFIESTRRLLSLWLPMYERE 238 (284)
T ss_pred CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88669999961235779976644556135789988744456899985899999759109999999999999999989984
Q ss_pred CCCCEEEEE-C-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 356416775-1-----30233456555554226663010489999
Q gi|254780601|r 242 HGAKNAIVF-C-----STRASVSRFTKVLAEHLFQVVALSGELSQ 280 (573)
Q Consensus 242 ~~~~~~ivF-~-----~t~~~~~~l~~~L~~~g~~~~~lhg~~~q 280 (573)
.+..-+|-| | ++..-++++++.|.+.|+.+...|-||..
T Consensus 239 gksyltIaiGCTGGqHRSV~iae~L~~~l~~~~~~v~v~HRdl~r 283 (284)
T pfam03668 239 GKSYLTIAIGCTGGKHRSVYIAEQLADYFRSDGKTVVALHRDLER 283 (284)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 998799997688986279999999999998479966486677888
No 267
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.94 E-value=0.31 Score=27.52 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=52.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCC-CCCCCC
Q ss_conf 564167751302334565555542----26663010489999999999866544881499853-----86500-145788
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAAR-GIDLPD 312 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaR-GiDi~~ 312 (573)
+..++||-|.|++-+..+.+.+.. .++++..++|+.+..+....+ ++ ..+|+|+| |...+ .+++.+
T Consensus 68 ~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 8966999968799999999999985057983899983898879999998---53-8759996818999999848865132
Q ss_pred CCEEEE
Q ss_conf 733897
Q gi|254780601|r 313 LELVIH 318 (573)
Q Consensus 313 v~~Vin 318 (573)
+.++|-
T Consensus 144 l~~lVl 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
T ss_conf 248999
No 268
>KOG0991 consensus
Probab=92.77 E-value=0.16 Score=29.41 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCCCC--CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 001224--64318999613110010012357888752143342256
Q gi|254780601|r 141 GKGLNI--SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184 (573)
Q Consensus 141 ~~~l~l--~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l 184 (573)
++.+.| ..-+.+||||||-|-+ |-+..+.+.++-.....+..|
T Consensus 104 Q~kv~lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991 104 QKKVTLPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred HHHCCCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHCCCCHHHH
T ss_conf 720348998524899615220206-899999999999706320000
No 269
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=92.66 E-value=0.11 Score=30.53 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999928987468999999999861042
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAEN 66 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~ 66 (573)
|++..|||||||-.- -.+|+.|+...
T Consensus 130 iLVTGPTGSGKSTTl-AsmIDyIN~~~ 155 (350)
T TIGR01420 130 ILVTGPTGSGKSTTL-ASMIDYINKNK 155 (350)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHCCC
T ss_conf 898768898678999-99997874038
No 270
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.56 E-value=0.6 Score=25.56 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=39.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH----HHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861042122556882799984998----9999999999998
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR----ELAVQVGRELEWL 97 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr----ELa~Qv~~~~~~l 97 (573)
.+.++++.|-.|||||..-..=+|..|+... +..-.+.||++.|+ ||-.-|.+.+...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~----~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~ 76 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG----PLDVDEILVVTFTKAAAAEMKERIRDRLKEA 76 (1139)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCC----CCCHHHEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 6666899966889842169999999997258----9985572344063888999999999999999
No 271
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.52 E-value=0.22 Score=28.53 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHH--HHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 8789899999999975996--9999289874689999--99999861042122556882799984998999
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFG--LALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d--~i~~a~TGsGKT~af~--lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
+.+|+=|+.|+..|+...| +.+|.--|+|||.-|- +-+|+.+ .....|++|=|+||+--+
T Consensus 967 ~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~avi~ai~tl-------~~~~rpqViGLAPTH~AV 1030 (1756)
T PRK13709 967 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNML-------PESERPRVVGLGPTHRAV 1030 (1756)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-------CCCCCCCEEEECCHHHHH
T ss_conf 3578577877756324787259987035566677899999999725-------513587267567517899
No 272
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=0.83 Score=24.60 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=54.0
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HH
Q ss_conf 69999289874689-99999999861042122556882799984998999999999999854469879999889987-99
Q gi|254780601|r 39 DVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HR 116 (573)
Q Consensus 39 d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~~ 116 (573)
-.+-..+-|+|||. |..+. ..|..... ....| |-+ +..+..+.......+.-+-+..+. .+
T Consensus 40 AyLFsGprG~GKTt~ArilA--k~LnC~~~---~~~~P-----Cg~-------C~sC~~i~~g~~~DviEidaasn~~Vd 102 (560)
T PRK06647 40 AYIFSGPRGVGKTSSARAFA--RCLNCVNG---PTIMP-----CGE-------CFSCKSIDNDSSLDVIEIDGASNTSVQ 102 (560)
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHCCCCC---CCCCC-----CCC-------CHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 36632899878999999999--99659999---99888-----878-------878888745999875764364548889
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 999612897599822310133210001224643189996131100100123578887521--43342256311112220
Q gi|254780601|r 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 117 q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
+++.|...+.. +| .-++-+.+||||||.|-.-.| +.+|+-+ |...-..++..|-|..|
T Consensus 103 dIR~l~e~v~~---~P------------~~~~yKV~IIDEahmLt~~A~----NALLKtLEEPP~~~~FILaTte~~KI 162 (560)
T PRK06647 103 DVRQIKEEIMF---PP------------ASSRYRVYIIDEVHMLSNSAF----NALLKTIEEPPPYIVFIFATTEVHKL 162 (560)
T ss_pred HHHHHHHHHCC---CC------------CCCCEEEEEECCHHHCCHHHH----HHHHHHHHCCCCCEEEEEECCCHHHC
T ss_conf 99999998632---87------------668706999646565599999----99999863488755999977994768
No 273
>PRK05416 hypothetical protein; Provisional
Probab=92.27 E-value=0.88 Score=24.45 Aligned_cols=237 Identities=18% Similarity=0.182 Sum_probs=108.9
Q ss_pred EEEECCCCCCHHHHHH--------------HHHHHHHHCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 9999289874689999--------------99999861042122556882799984-99899999999999985446987
Q gi|254780601|r 40 VLVSAQTGSGKTVAFG--------------LALASTLLAENDRFSPASAPLALAIA-PTRELAVQVGRELEWLYAKTGVV 104 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~--------------lp~l~~l~~~~~~~~~~~~~~~lil~-PTrELa~Qv~~~~~~l~~~~~~~ 104 (573)
+|+....|+|||.|-- +.++..+...... ......-|+.+= =+++...+..+.+.++.. .++.
T Consensus 9 viVTGlSGAGKStAl~~LEDlGy~ciDNlP~~Ll~~l~~~~~~-~~~~~~lAv~iD~R~~~~~~~l~~~~~~l~~-~~~~ 86 (292)
T PRK05416 9 VIVTGLSGAGKSVALRALEDLGYYCVDNLPPSLLPKLVELLAQ-SGGIDKVAVVIDVRSRPFFLDLPEALDELRE-RGID 86 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCC
T ss_conf 9996899787999999998179447868888999999999724-7887706999824665447789999999985-7995
Q ss_pred EEEEECCCCHHHHHH--HHCCCCEEEEECCCCHHHHHHCCCCC---CCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCCC
Q ss_conf 999988998799999--61289759982231013321000122---464318999613110010-012357888752143
Q gi|254780601|r 105 VAVCIGGVSVHRERR--DLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPK 178 (573)
Q Consensus 105 v~~~~gg~~~~~q~~--~l~~~~~iiv~TPgrl~d~~~~~~l~---l~~v~~lVlDEaD~ml~~-gf~~~i~~i~~~~p~ 178 (573)
+..+|=.++-+.=++ +--+..|=+-+--..|.+-|++..-. +...--+|+|--+ |+. .+.+.|...+..-..
T Consensus 87 ~~ilFLdA~~~~LlrRy~eTRR~HPL~~~~~~L~eaI~~Er~~L~~ir~~Ad~vIDTS~--l~~~~Lr~~i~~~~~~~~~ 164 (292)
T PRK05416 87 VRVLFLDASDEVLIRRYSETRRRHPLSGDGGSLLEAIELERELLAPLRERADLVIDTSE--LSVHQLRERIRERFGGEGR 164 (292)
T ss_pred EEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCC--CCHHHHHHHHHHHHCCCCC
T ss_conf 59999978869999988750689998889999899999999999999974028974799--9999999999998655688
Q ss_pred CC--CEEEEECC----CCCCCHH-HHHHHCCCCCCCCCCCCCCCC-CCCCHHCCCCCCCH----HH-HHHHHCCC----C
Q ss_conf 34--22563111----1222001-111210123333233323256-65200000000000----24-55420010----2
Q gi|254780601|r 179 KR--RMLMFSAT----ISPAITT-LAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSD----RD-NAIVNILR----Y 241 (573)
Q Consensus 179 ~~--q~~l~SAT----~~~~i~~-l~~~~~~~p~~i~~~~~~~~~-~~i~~~~~~v~~~~----k~-~~l~~ll~----~ 241 (573)
.. ...+.|=- +|.+..- +=-+|+.||-++.--...... +.|..++..-+... ++ ..|..++. .
T Consensus 165 ~~~l~i~i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~Lr~~tG~D~~V~~yv~~~~~~~~f~~~i~~~l~~~lp~y~~e 244 (292)
T PRK05416 165 ERELTVTVESFGFKYGIPLDADLVFDVRFLPNPHYVPELRPLTGLDKPVADYVLAQPEVEEFLDQIRDLLEFWLPGYRRE 244 (292)
T ss_pred CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88559999960245689975311455135789988644356899985899999749229999999999999999999984
Q ss_pred CCCCEEEEE-C-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 356416775-1-----302334565555542266630104899999
Q gi|254780601|r 242 HGAKNAIVF-C-----STRASVSRFTKVLAEHLFQVVALSGELSQQ 281 (573)
Q Consensus 242 ~~~~~~ivF-~-----~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~ 281 (573)
.+..-+|-| | ++..-++++++.|.+ ||++...|-||...
T Consensus 245 gk~yltIaiGCTGG~HRSV~~ae~l~~~l~~-~~~v~v~HRdl~~~ 289 (292)
T PRK05416 245 GKSYLTIAIGCTGGQHRSVAIAERLAERLRA-GYNVQVRHRDLERR 289 (292)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCCEEECCCCCCC
T ss_conf 9977999975889871799999999999857-99727873667876
No 274
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.21 E-value=0.73 Score=24.98 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHH
Q ss_conf 9878989999999997-59969999289874689
Q gi|254780601|r 20 YVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTV 52 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l-~g~d~i~~a~TGsGKT~ 52 (573)
+..+++.|.+-+..++ .++++++..+||||||-
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt 158 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT 158 (312)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 3788888999999999769949998888886495
No 275
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=92.19 E-value=0.9 Score=24.39 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHH
Q ss_conf 999928987468999999999861042122556882799984998999999999999854469879999889987-9999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRER 118 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~~q~ 118 (573)
.+-..|.|+|||.+-. .+...+.+..... ..| |.+ +..+..+.......+.-+-+..+. .+++
T Consensus 40 yLF~GP~GtGKts~Ar-ifAkaLnC~~~~~---~~p-----------C~~-C~~C~~i~~g~~~DviEidaas~~gVd~I 103 (557)
T PRK07270 40 YLFSGPRGTGKTSAAK-IFAKAMNCPNQVD---GEP-----------CNN-CDICRDITNGSLEDVIEIDAASNNGVDEI 103 (557)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHCCCCCCC---CCC-----------CCC-CHHHHHHHCCCCCCEEEECCCCCCCHHHH
T ss_conf 4210899868999999-9999957999899---998-----------887-77999987589997487347776788999
Q ss_pred HHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC---CCCCCEEEEECCCCCC
Q ss_conf 9612897599822310133210001224643189996131100100123578887521---4334225631111222
Q gi|254780601|r 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKKRRMLMFSATISPA 192 (573)
Q Consensus 119 ~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~---p~~~q~~l~SAT~~~~ 192 (573)
+.|..... -+| .-+.-+.+||||||.|=.- .-+.+|+.+ |...-.+| -+|-|..
T Consensus 104 Rei~~~~~---~~P------------~~~~yKV~IIDEah~Ls~~----A~NALLKtLEEPP~~~vFIL-~Ttep~k 160 (557)
T PRK07270 104 RDIRDKST---YAP------------SRATYKVYIIDEVHMLSTG----AFNALLKTLEEPTENVVFIL-ATTELHK 160 (557)
T ss_pred HHHHHHHC---CCC------------CCCCEEEEEECCHHHCCHH----HHHHHHHHHHCCCCCEEEEE-EECCHHH
T ss_conf 99999842---387------------7788389997144534999----99989998528998769999-8499475
No 276
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.18 E-value=0.9 Score=24.38 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=27.6
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 4643189996131100100123578887521--43342256311112220
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
-+.-|.+|+||||.|=. +.-+.+|+.+ |...-+.++.+|-|..+
T Consensus 91 ~g~~KV~II~~ae~m~~----~AaNALLKtLEEPP~~t~fIL~t~~~~~l 136 (313)
T PRK05564 91 EGDKKVIIIYKSEKMTE----QAQNAFLKTIEEPPKGVFIILLCENLEQI 136 (313)
T ss_pred CCCCEEEEECCHHHHCH----HHHHHHHHCCCCCCCCEEEEEEECCHHHC
T ss_conf 58956999807777589----99999845503689985899864983547
No 277
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.06 E-value=0.85 Score=24.54 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 4643189996131100100123578887521--43342256311112220
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
-+.-+.+|+||||.|=. +.-+.+|+.+ |...-.+++.++-+..+
T Consensus 93 ~g~~KV~IId~Ad~Mn~----~AaNALLKtLEEPP~~tvfILit~~~~~l 138 (290)
T PRK05917 93 EANYKIYIIHEADRMTL----DAISAFLKVLEDPPKHSVIILTSAKPQRL 138 (290)
T ss_pred CCCCEEEEECCHHHHCH----HHHHHHHHHHCCCCCCEEEEEEECCHHHC
T ss_conf 68826999756776389----99999999734798785999986992548
No 278
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=92.05 E-value=0.91 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHCCCCCCCHHHHHHHHHHH------CCCCEEEECCCCCCHHH
Q ss_conf 9997879878989999999997------59969999289874689
Q gi|254780601|r 14 ALSERGYVNLTSVQEAILNPDL------REKDVLVSAQTGSGKTV 52 (573)
Q Consensus 14 ~l~~~g~~~pt~iQ~~~ip~~l------~g~d~i~~a~TGsGKT~ 52 (573)
.|++.-|.....+....+..+. ++++++...++|+|||.
T Consensus 18 tle~~d~~~~~~~~~~~i~~L~~~~~i~~~~Nlll~G~~GtGKTh 62 (178)
T pfam01695 18 TLEDFDFRAARGLDRRLIAELAGLDWIEQAENLLLLGPPGVGKTH 62 (178)
T ss_pred CHHHCCCCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCCCCCHHH
T ss_conf 863368878999899999988559742158768998999987899
No 279
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.03 E-value=0.37 Score=26.94 Aligned_cols=49 Identities=29% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999997879878989999999997599--6999928987468999999999861
Q gi|254780601|r 11 IGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 11 l~~~l~~~g~~~pt~iQ~~~ip~~l~g~--d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
....|+++||. +-|.+.|..++... =+++.++||||||-.. -.+++.+.
T Consensus 55 ~~~~L~~LG~~---~~~~~~l~~~~~~~~GlilitGptGSGKtTtl-~a~l~~~~ 105 (264)
T cd01129 55 QILDLEKLGLK---PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CCCCHHHHCCC---HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 65798795799---99999999997089988999789999779999-99998643
No 280
>KOG0330 consensus
Probab=91.98 E-value=0.7 Score=25.09 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=61.3
Q ss_pred HHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC----
Q ss_conf 5542001023564167751302334565555542----26663010489999999999866544881499853865----
Q gi|254780601|r 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA---- 304 (573)
Q Consensus 233 ~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDva---- 304 (573)
-.|.+||+.-+...++|-+.|++-+..+++..+. .|+.|..|-|+|.. +.+.++.++.- .|||||--+
T Consensus 118 PIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m--~~q~~~L~kkP--hilVaTPGrL~dh 193 (476)
T KOG0330 118 PILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM--MLQANQLSKKP--HILVATPGRLWDH 193 (476)
T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHH--HHHHHHHHCCC--CEEEECCHHHHHH
T ss_conf 9999997198774489964828999999999987535667279998658329--99988762489--8798370789999
Q ss_pred ---CCCCCCCCCCEEE--------EECCCCCHHHHHHHH
Q ss_conf ---0014578873389--------705887478999860
Q gi|254780601|r 305 ---ARGIDLPDLELVI--------HAELSSNPENLLHRS 332 (573)
Q Consensus 305 ---aRGiDi~~v~~Vi--------n~d~P~~~~~yvHR~ 332 (573)
.+|.....+.+.| +.|+-...+..+-++
T Consensus 194 l~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~i 232 (476)
T KOG0330 194 LENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVI 232 (476)
T ss_pred HHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 874368408875787633177662115689999998746
No 281
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=91.96 E-value=0.49 Score=26.17 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=12.4
Q ss_pred CEEEECCCCCCHHH
Q ss_conf 69999289874689
Q gi|254780601|r 39 DVLVSAQTGSGKTV 52 (573)
Q Consensus 39 d~i~~a~TGsGKT~ 52 (573)
+|+...++|+|||.
T Consensus 1 ~vll~Gp~G~GKT~ 14 (139)
T pfam07728 1 GVLLVGPPGTGKSE 14 (139)
T ss_pred CEEEECCCCCHHHH
T ss_conf 98999899756999
No 282
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.69 E-value=0.4 Score=26.74 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=68.8
Q ss_pred CCCCCEEEEECCCHHH----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCCCE
Q ss_conf 2356416775130233----45655555422666301048999999999986654488149985386-500145788733
Q gi|254780601|r 241 YHGAKNAIVFCSTRAS----VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV-AARGIDLPDLEL 315 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~----~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv-aaRGiDi~~v~~ 315 (573)
+....++..-+.|--- .+.+..+|...|+.+..|.|.+.-.+|..++.+..+|.++++|.|-. .--..++.++.+
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHCCEEECCEEE
T ss_conf 87288168866379999999999998766519748986446650679999998747998979972212204504420238
Q ss_pred EEEECCCCCHHHHHHHHCCCCC
Q ss_conf 8970588747899986030103
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGR 337 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgR 337 (573)
||-=+ -||-|=-=|
T Consensus 388 VIiDE--------QHRFGV~QR 401 (677)
T COG1200 388 VIIDE--------QHRFGVHQR 401 (677)
T ss_pred EEEEC--------CCCCCHHHH
T ss_conf 99725--------210229999
No 283
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.60 E-value=0.45 Score=26.43 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=18.6
Q ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHHC
Q ss_conf 2356416775130--23345655555422
Q gi|254780601|r 241 YHGAKNAIVFCST--RASVSRFTKVLAEH 267 (573)
Q Consensus 241 ~~~~~~~ivF~~t--~~~~~~l~~~L~~~ 267 (573)
..+|..-+||+|- -+.++++.+++...
T Consensus 171 ~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 171 EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 84999988998478786899999998764
No 284
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.60 E-value=0.98 Score=24.12 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=54.7
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HH
Q ss_conf 69999289874689-99999999861042122556882799984998999999999999854469879999889987-99
Q gi|254780601|r 39 DVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HR 116 (573)
Q Consensus 39 d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~~ 116 (573)
-.+-..+-|||||- |..+.- .+.+... |+-|-|.+ ++.+..+.....+.|.-+-+..+- .+
T Consensus 40 ayLf~GprG~GKTs~Ari~ak--alnc~~~--------------~~~~pC~~-C~~C~~i~~g~~~Dv~Eidaas~~gvd 102 (541)
T PRK05563 40 AYLFCGTRGTGKTSTAKIFAK--AVNCLNP--------------QDGEPCNE-CEICKKINEGLLMDVIEIDAASNNGVD 102 (541)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHCCCCC--------------CCCCCCCC-CHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 453038799589999999999--9579998--------------88985751-488999856898873662444447889
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 999612897599822310133210001224643189996131100100123578887521--43342256311112220
Q gi|254780601|r 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 117 q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
+++.|... +--+| .-++-+.+|+||+|.|-.-.| +.+++-+ |...-...|-.|-|..|
T Consensus 103 ~iR~~~~~---~~~~p------------~~~~~Kv~IiDEvhmls~~a~----nallKtlEePp~~~~Filatte~~ki 162 (541)
T PRK05563 103 DIREIIEN---VKYPP------------QEGKYKVYIMDEVHMLSQGAV----NAFLKTLEEPPSNVIFILATTDPQKL 162 (541)
T ss_pred HHHHHHHH---CEECC------------CCCCEEEEEEECCCCCCHHHH----HHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 99999976---10487------------678705999977233899999----99999985487775699976984427
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=91.57 E-value=0.25 Score=28.09 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=29.3
Q ss_pred HHHHCCCCCCCHHHHHHHHHH------HCCCCEEEECCCCCCHHH
Q ss_conf 999787987898999999999------759969999289874689
Q gi|254780601|r 14 ALSERGYVNLTSVQEAILNPD------LREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 14 ~l~~~g~~~pt~iQ~~~ip~~------l~g~d~i~~a~TGsGKT~ 52 (573)
.|++.-|..+..|-...|..+ -++.|||...+||+|||.
T Consensus 72 tle~fDf~~~~~l~~~~i~~La~~~fi~~~~Nvil~G~~GtGKTh 116 (258)
T PRK09183 72 TFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTH 116 (258)
T ss_pred CHHHCCCCCCCCCCHHHHHHHHCCCHHHCCCCEEEECCCCCCHHH
T ss_conf 775556546886238999988258166558867998999986899
No 286
>KOG0327 consensus
Probab=91.57 E-value=0.19 Score=28.91 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=49.3
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHH
Q ss_conf 86654488149985386500145788733897058874789998603010378886025640599999
Q gi|254780601|r 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354 (573)
Q Consensus 287 ~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~ 354 (573)
+.-++...+++..|++-+.++.|...+..+.++-+..++.-+.|.+.|- .....|..+.++++.+..
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEm 181 (397)
T KOG0327 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEM 181 (397)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCEEECCCCHHHHHHHCCC-CCCCCCEEEEEECCHHHH
T ss_conf 8641124614665317641003455552047635437850577764136-456665467752436766
No 287
>PRK12377 putative replication protein; Provisional
Probab=91.52 E-value=1.1 Score=23.91 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHH-------HH-CCCCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 798789899999999-------97-59969999289874689-9999999986104212255688279998499899999
Q gi|254780601|r 19 GYVNLTSVQEAILNP-------DL-REKDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ 89 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~-------~l-~g~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Q 89 (573)
+|..-++.|..++.. .+ .+.++|...++|||||. |-+| -..+.... ..+..+.+-+|..+
T Consensus 75 ny~~~~~~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AI--g~~a~~~G---------~sVlF~t~~dLv~~ 143 (248)
T PRK12377 75 NYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAI--GNRLLAKG---------RSVIVVTVPDVMSR 143 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH--HHHHHHCC---------CEEEEEEHHHHHHH
T ss_conf 56457878999999999999987318860899899998788999999--99999879---------96999889999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780601|r 90 VG 91 (573)
Q Consensus 90 v~ 91 (573)
+.
T Consensus 144 L~ 145 (248)
T PRK12377 144 LH 145 (248)
T ss_pred HH
T ss_conf 99
No 288
>KOG2543 consensus
Probab=91.33 E-value=0.43 Score=26.52 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHCCCC------EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 899999999975996------99992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 25 SVQEAILNPDLREKD------VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 25 ~iQ~~~ip~~l~g~d------~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
.-|-..+..++-..| +++...+|||||. ++..+....+.. .--.-++=..-++-|-.+|..... .+
T Consensus 12 e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~-----~~r~~l~~~n~~--~vw~n~~ecft~~~lle~IL~~~~-~~ 83 (438)
T KOG2543 12 ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTY-----LVRQLLRKLNLE--NVWLNCVECFTYAILLEKILNKSQ-LA 83 (438)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHH-----HHHHHHHHCCCC--CEEEEHHHHCCHHHHHHHHHHHHC-CC
T ss_conf 8999999998478986665157996147874559-----999998603786--305415775167999999998735-67
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HHHHHHHHHHC
Q ss_conf 4469879999889987999996128975998223101332100012246431899961311001001--23578887521
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF--RDDIEFILDSS 176 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf--~~~i~~i~~~~ 176 (573)
...+..+ +.-...+..-..+++-+| ..-+.+.--++|||-||.+-||+= ..-+-.+-+.+
T Consensus 84 d~dg~~~---------~~~~en~~d~i~~l~q~~---------~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~ 145 (438)
T KOG2543 84 DKDGDKV---------EGDAENFSDFIYLLVQWP---------AATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL 145 (438)
T ss_pred CCCHHHH---------HHHHHHHHHHHHHHHHHH---------HHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8740555---------427999999999998447---------7644674499997477766306507889999899873
Q ss_pred CCCCCEEEEECCCCCC
Q ss_conf 4334225631111222
Q gi|254780601|r 177 PKKRRMLMFSATISPA 192 (573)
Q Consensus 177 p~~~q~~l~SAT~~~~ 192 (573)
+...-.++||+++++.
T Consensus 146 ~~~~i~iils~~~~e~ 161 (438)
T KOG2543 146 NEPTIVIILSAPSCEK 161 (438)
T ss_pred CCCCEEEEEECCCCHH
T ss_conf 7773699983266677
No 289
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=91.28 E-value=1.1 Score=23.74 Aligned_cols=126 Identities=25% Similarity=0.309 Sum_probs=61.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC---CHHHHHHHHHHHHHHHHHCCCEEEEEECC-C-CH
Q ss_conf 9999289874689999999998610421225568827999849---98999999999999854469879999889-9-87
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP---TRELAVQVGRELEWLYAKTGVVVAVCIGG-V-SV 114 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P---TrELa~Qv~~~~~~l~~~~~~~v~~~~gg-~-~~ 114 (573)
++...=-|+|||-+ |.=|-+......+ . ++|+- =|.=|. +++..+++..|+.+..--.| + |-
T Consensus 85 il~VGVNG~GKTTT--IaKLA~~l~~~Gk-------~-V~laAgDTFRAAA~---EQL~~Wa~R~gv~vi~~~~gn~DPA 151 (284)
T TIGR00064 85 ILFVGVNGVGKTTT--IAKLANKLKKQGK-------S-VLLAAGDTFRAAAI---EQLEVWAKRLGVDVIKQKEGNADPA 151 (284)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHCCC-------E-EEEECCCHHHHHHH---HHHHHHHHHHCCEEEECCCCCCCCH
T ss_conf 99984408860102--8899999987499-------0-89982752479999---9999989883875540788988717
Q ss_pred HHHHH----HHCCCCEEEEE-CCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH-----HCCCCCCEEE
Q ss_conf 99999----61289759982-23101332100012246431899961311001001235788875-----2143342256
Q gi|254780601|r 115 HRERR----DLQNGAHIVVG-TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-----SSPKKRRMLM 184 (573)
Q Consensus 115 ~~q~~----~l~~~~~iiv~-TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~-----~~p~~~q~~l 184 (573)
.--.+ +-.+|.|||++ |-|||- .+.+ | +|| ..-|.+|++ ..|... .+.
T Consensus 152 aV~fDAi~~Ak~~niDvvliDTAGRLq--nk~N-L---------m~E---------L~KI~RV~~k~~~~~aP~e~-lLV 209 (284)
T TIGR00064 152 AVIFDAIQAAKARNIDVVLIDTAGRLQ--NKVN-L---------MDE---------LKKIKRVIKKVDPVDAPDEV-LLV 209 (284)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCC--CCHH-H---------HHH---------HHHHHHHHHHHHCCCCCCEE-EEE
T ss_conf 899998999987499789973475454--6620-3---------999---------99999987321025787557-542
Q ss_pred EECCCCCCCHHHHHHH
Q ss_conf 3111122200111121
Q gi|254780601|r 185 FSATISPAITTLAKNY 200 (573)
Q Consensus 185 ~SAT~~~~i~~l~~~~ 200 (573)
.=||.-+.-..-++.|
T Consensus 210 lDAt~Gqna~~QA~~F 225 (284)
T TIGR00064 210 LDATTGQNALEQAKVF 225 (284)
T ss_pred EHHHHHHHHHHHHHHH
T ss_conf 2022203089999998
No 290
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=91.27 E-value=0.61 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=5.8
Q ss_pred EEEECCCH---HHHHHH
Q ss_conf 99984998---999999
Q gi|254780601|r 77 ALAIAPTR---ELAVQV 90 (573)
Q Consensus 77 ~lil~PTr---ELa~Qv 90 (573)
+||+-||- -||.|+
T Consensus 30 ~~vvMpTG~GKSLCYQ~ 46 (497)
T TIGR00614 30 CLVVMPTGGGKSLCYQL 46 (497)
T ss_pred EEEEECCCCCHHHHHHH
T ss_conf 69981589860367640
No 291
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=91.24 E-value=0.16 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=23.3
Q ss_pred HHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999975-99699992898746899999999986104
Q gi|254780601|r 29 AILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65 (573)
Q Consensus 29 ~~ip~~l~-g~d~i~~a~TGsGKT~af~lp~l~~l~~~ 65 (573)
.+|..... |+|++...|.|||||+ ++--++-|++.
T Consensus 204 RAleIAaAGGHNlll~GPPGsGKTm--la~r~~giLP~ 239 (505)
T TIGR00368 204 RALEIAAAGGHNLLLLGPPGSGKTM--LASRLQGILPP 239 (505)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHCCCCC
T ss_conf 2677753135643767824962689--99875105786
No 292
>PRK03321 putative aminotransferase; Provisional
Probab=91.22 E-value=1.1 Score=23.71 Aligned_cols=76 Identities=17% Similarity=0.067 Sum_probs=35.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHCCCCE-EEEECC----CCHHHHHHC-CCCC
Q ss_conf 7999849989999999999998544698799998----89987999996128975-998223----101332100-0122
Q gi|254780601|r 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAH-IVVGTP----GRLCDHIRG-KGLN 145 (573)
Q Consensus 76 ~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~----gg~~~~~q~~~l~~~~~-iiv~TP----grl~d~~~~-~~l~ 145 (573)
.+++..||=.. |... ....|.++..+- .+.+++.-...+..+++ |++|+| |.+++.-+- ..+.
T Consensus 100 ~Vl~p~P~f~~----Y~~~---~~~~G~~~~~v~l~~~~~~dl~~l~~~i~~~~~lv~l~nPnNPTG~~~~~~~l~~l~~ 172 (352)
T PRK03321 100 EVVFAWRSFEA----YPIL---VQVAGATPVQVPLTDDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAALARFVA 172 (352)
T ss_pred EEEECCCCHHH----HHHH---HHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 89988885326----8999---9980987999866755578837899865888758998499997301368375899997
Q ss_pred -CCCCEEEEEECCC
Q ss_conf -4643189996131
Q gi|254780601|r 146 -ISHLKAVVLDEAD 158 (573)
Q Consensus 146 -l~~v~~lVlDEaD 158 (573)
...=-++|+|||=
T Consensus 173 ~~~~~~~vvvDEaY 186 (352)
T PRK03321 173 AVPADVLVVLDEAY 186 (352)
T ss_pred HCCCCCEEEEHHHH
T ss_conf 55478479722408
No 293
>KOG0989 consensus
Probab=91.13 E-value=0.75 Score=24.91 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 4643189996131100100123578887521433422563111122
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~ 191 (573)
..--+.+||||||-|-.-- ...+.+.++..+.....+|..--+..
T Consensus 127 ~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989 127 CPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCEEEEEECHHHHHHHH-HHHHHHHHHCCCCCEEEEEECCCHHH
T ss_conf 9863289974164530999-99999998625466599997388564
No 294
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.09 E-value=0.96 Score=24.20 Aligned_cols=72 Identities=15% Similarity=0.288 Sum_probs=45.9
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHH-------CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 99997879878989999999997-------59969999289874689999999998610421225568827999849989
Q gi|254780601|r 13 EALSERGYVNLTSVQEAILNPDL-------REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 13 ~~l~~~g~~~pt~iQ~~~ip~~l-------~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
..++...|..+..+|..++-.+. ++.+++...++|+|||.= +..|.+.+. .. ...++.+++-|
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKthL-a~Ai~~~l~-~~--------g~sv~f~~~~e 143 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHL-AIAIGNELL-KA--------GISVLFITAPD 143 (254)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH-HHHHHHHHH-HC--------CCEEEEEEHHH
T ss_conf 785430235885566999999999998732588289989999879999-999999999-83--------98499988599
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780601|r 86 LAVQVGREL 94 (573)
Q Consensus 86 La~Qv~~~~ 94 (573)
|..++....
T Consensus 144 l~~~Lk~~~ 152 (254)
T COG1484 144 LLSKLKAAF 152 (254)
T ss_pred HHHHHHHHH
T ss_conf 999999987
No 295
>PRK06526 transposase; Provisional
Probab=91.06 E-value=0.26 Score=28.01 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHCCCCCCCHHHHHHHHH------HHCCCCEEEECCCCCCHHH
Q ss_conf 99978798789899999999------9759969999289874689
Q gi|254780601|r 14 ALSERGYVNLTSVQEAILNP------DLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 14 ~l~~~g~~~pt~iQ~~~ip~------~l~g~d~i~~a~TGsGKT~ 52 (573)
.|++..|.....|-...|.. +-+++|+|...+||+|||.
T Consensus 69 tLe~fd~~~~~~l~~~~i~~La~~~fi~~~~Nvil~G~~GtGKTh 113 (254)
T PRK06526 69 SLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTH 113 (254)
T ss_pred CHHHCCCCCCCCCCHHHHHHHHCCCHHHCCCCEEEECCCCCCHHH
T ss_conf 987678656789899999998637177658878998999986899
No 296
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.75 E-value=0.63 Score=25.41 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=49.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC-CC-----CCCCC
Q ss_conf 02356416775130233456555554226---66301048999999999986654488149985386-50-----01457
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDV-AA-----RGIDL 310 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDv-aa-----RGiDi 310 (573)
......++||.|.|+.-+.++.+.+...+ ..+..++|+....++.. ......+|+|||-- .. ..+.+
T Consensus 26 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ilv~T~~~l~~~~~~~~~~~ 101 (144)
T cd00046 26 DSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK----LLSGKTDIVVGTPGRLLDELERLKLSL 101 (144)
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH----HHCCCCCEEECCHHHHHHHHHCCCCCC
T ss_conf 7568976999746799999999999997488717999961363677898----745898499828899999997387655
Q ss_pred CCCCEEEE
Q ss_conf 88733897
Q gi|254780601|r 311 PDLELVIH 318 (573)
Q Consensus 311 ~~v~~Vin 318 (573)
.++++||-
T Consensus 102 ~~~~~vVi 109 (144)
T cd00046 102 KKLDLLIL 109 (144)
T ss_pred CCCCEEEE
T ss_conf 51009999
No 297
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.67 E-value=0.52 Score=26.00 Aligned_cols=53 Identities=21% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 46431899961311001001235788875214334225631111222001111
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~ 198 (573)
..+-+.++|||.--.||..-..++..+++.+.+.-.|++++.---..+..++.
T Consensus 153 a~~P~iliLDEPTagLDp~~~~~i~~ll~~l~~~G~Tii~iTHdm~~~~~~ad 205 (275)
T PRK13639 153 AMNPEIMVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPIYAN 205 (275)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 36998999779755489999999999999999769999999389999999699
No 298
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=90.63 E-value=0.2 Score=28.77 Aligned_cols=139 Identities=27% Similarity=0.197 Sum_probs=69.0
Q ss_pred HCCCCCCCHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 7879878989999999997-----59969999289874689999999998610421225568827999849989999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDL-----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l-----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~ 91 (573)
...+..+-+.|...+..+. .+.+-++...-|.|||+.-+.-+.. +..... ...+.+||+||+- +..+..
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~-~~~~~~----~~~~~~liv~p~s-~~~nw~ 406 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK----VYLGPALIVVPAS-LLSNWK 406 (866)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH-HHHHHC----CCCCCEEEECCHH-HHHHHH
T ss_conf 3320110488998669999987762368775752334219999999877-776401----3578726871477-776799
Q ss_pred HHHHHHHHHCCCEEEEEECCCC-H---HHHHHHH-CCC----CEEEEECCCCHHHH-HHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 9999985446987999988998-7---9999961-289----75998223101332-10001224643189996131100
Q gi|254780601|r 92 RELEWLYAKTGVVVAVCIGGVS-V---HRERRDL-QNG----AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEML 161 (573)
Q Consensus 92 ~~~~~l~~~~~~~v~~~~gg~~-~---~~q~~~l-~~~----~~iiv~TPgrl~d~-~~~~~l~l~~v~~lVlDEaD~ml 161 (573)
+++.++...... +...+|-.. . ......+ +.. .++++.|=.-+... ...+.+.-....++|+|||..+-
T Consensus 407 ~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 407 REFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHHHCCHHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999861412100-2321153112103699999998621330101899999999975020554223677698997887540
Q ss_pred C
Q ss_conf 1
Q gi|254780601|r 162 D 162 (573)
Q Consensus 162 ~ 162 (573)
+
T Consensus 486 n 486 (866)
T COG0553 486 N 486 (866)
T ss_pred C
T ss_conf 4
No 299
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.54 E-value=1.3 Score=23.29 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 024554200102--3564167751302334565555542--26663010-4899999999998665
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNALQMM 290 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~~~f 290 (573)
-|..+..++... ....+.+.|+.--...+++...+.. .+++...+ .|.++..+-.++.+..
T Consensus 206 GKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~a~ 271 (421)
T TIGR03600 206 GKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 745999999999998669838999257999999999999854897766652899989999999999
No 300
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=90.39 E-value=1.3 Score=23.21 Aligned_cols=120 Identities=18% Similarity=0.262 Sum_probs=60.1
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCC-------------CCCCCCCEEEEECCCHHH----HHHHHHHHHHHHH
Q ss_conf 969999289874689-9999999986104212-------------255688279998499899----9999999999854
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDR-------------FSPASAPLALAIAPTREL----AVQVGRELEWLYA 99 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~-------------~~~~~~~~~lil~PTrEL----a~Qv~~~~~~l~~ 99 (573)
+=.+..++.|+||.. |+. +...+...... +...++|-.++|.|.-.- +.|. .+ ...++
T Consensus 15 HA~LF~G~~G~Gk~~~A~~--~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~-~~-~~~g~ 90 (216)
T TIGR00678 15 HAYLFTGPEGVGKELLALA--LAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEA-AE-GEEGS 90 (216)
T ss_pred CCEEEECCCCCCHHHHHHH--HHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH-HH-HHCCC
T ss_conf 6125444888748999999--99998077857788888588899987079982378742347777776458-97-62564
Q ss_pred -----HCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf -----469879999889987999996128975998223101332100012246431899961311001001235788875
Q gi|254780601|r 100 -----KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 100 -----~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
...|+ .+|++.|. +.+.+.. ..+.-|++|||.||.|-. ..=+.+||
T Consensus 91 a~~~~~~~Ik----------~dq~R~l~--------------~~~~~~~-~~~~~rVviI~~Ae~mn~----~AANALLK 141 (216)
T TIGR00678 91 AKRRALPQIK----------VDQVRELV--------------EFLSLTP-QESGRRVVIIEDAERMNE----AAANALLK 141 (216)
T ss_pred CCCCCCCCCC----------HHHHHHHH--------------HHHHHCC-CCCCCEEEEECCHHHCCH----HHHHHHHH
T ss_conf 2113678787----------27899999--------------9986064-214751799767323258----98986510
Q ss_pred HC--CCCCCEEEEECCCC
Q ss_conf 21--43342256311112
Q gi|254780601|r 175 SS--PKKRRMLMFSATIS 190 (573)
Q Consensus 175 ~~--p~~~q~~l~SAT~~ 190 (573)
.+ |...-++++-++-|
T Consensus 142 tLEEPp~~t~fiL~~~~~ 159 (216)
T TIGR00678 142 TLEEPPPNTLFILITHSP 159 (216)
T ss_pred HEECCCCCEEEEEECCCC
T ss_conf 101279870798850888
No 301
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.37 E-value=0.86 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=14.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8279998499899999999999985
Q gi|254780601|r 74 APLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 74 ~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
+....+..|.++++..+..-++.++
T Consensus 160 GvL~~~~~~~~~~~~~lvsriK~ma 184 (500)
T COG2804 160 GVLREVLEPPKELAAALVSRLKVMA 184 (500)
T ss_pred CEEEEHHCCCHHHHHHHHHHHHHHH
T ss_conf 9960011158889999999999884
No 302
>PRK08181 transposase; Validated
Probab=90.35 E-value=0.3 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHH-------HHCCCCEEEECCCCCCHHH
Q ss_conf 999978798789899999999-------9759969999289874689
Q gi|254780601|r 13 EALSERGYVNLTSVQEAILNP-------DLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 13 ~~l~~~g~~~pt~iQ~~~ip~-------~l~g~d~i~~a~TGsGKT~ 52 (573)
..|++..|.....+....|.. +-++.|||...+||+|||.
T Consensus 75 ktLe~fDf~~~p~i~~~~i~~L~~~~~fi~~~~Nvil~Gp~GtGKTh 121 (269)
T PRK08181 75 KTLDSFDFEAVPMISKAQVMALAAGDSWLAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHCCCHHHHCCCEEEEECCCCCCHHH
T ss_conf 88654785568998999999996567588648708998999987889
No 303
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.28 E-value=1.4 Score=23.15 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=55.5
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH--HHHCCCEEEE-EECCCC
Q ss_conf 969999289874689-999999998610421225568827999849989999999999998--5446987999-988998
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAV-CIGGVS 113 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l--~~~~~~~v~~-~~gg~~ 113 (573)
+-++..++.|+||+. |+. +...++....... | |-+ +..+..+ +.+.++.+.. --+|.+
T Consensus 26 HA~L~~g~~G~Gk~~la~~--la~~LlC~~~~~~----~-----------Cg~-C~sC~l~~~g~HPD~~~i~pe~~~k~ 87 (319)
T PRK06090 26 GALLLQSDEGLGVESLVEL--FSHALLCQNYQSE----A-----------CGF-CHSCELMKSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred CEEEEECCCCCCHHHHHHH--HHHHHHCCCCCCC----C-----------CCC-CHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 0676679998579999999--9999808999999----8-----------877-87799987589998236612335676
Q ss_pred H-HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCC
Q ss_conf 7-99999612897599822310133210001224643189996131100100123578887521--43342256311112
Q gi|254780601|r 114 V-HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATIS 190 (573)
Q Consensus 114 ~-~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~ 190 (573)
+ .+|++.+. +.+... -..+.-|.++||+||.|=. ..-+.+|+.+ |...-..++.++-|
T Consensus 88 I~vd~IR~l~--------------~~~~~~-~~~g~~KV~iI~~ae~m~~----~AaNALLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 88 ITVEQIRQCN--------------RLAQES-SQLGGYRLFVIEPADAMNE----SASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCHHHHHHHH--------------HHHHHC-CCCCCCEEEEECCHHHCCH----HHHHHHHHHHCCCCCCEEEEEEECCH
T ss_conf 8799999999--------------997545-2106936999814443499----99999999842899883899876851
Q ss_pred C
Q ss_conf 2
Q gi|254780601|r 191 P 191 (573)
Q Consensus 191 ~ 191 (573)
.
T Consensus 149 ~ 149 (319)
T PRK06090 149 K 149 (319)
T ss_pred H
T ss_conf 2
No 304
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.28 E-value=1.4 Score=23.15 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=53.1
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCCH-
Q ss_conf 969999289874689-999999998610421225568827999849989999999999998544698799998-89987-
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV- 114 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~-gg~~~- 114 (573)
+-.+...|.|+||+. |.. +.+.|+........ |. - .+..+.++.......+..+. -|.++
T Consensus 29 HA~Lf~Gp~G~GK~~~A~~--~A~~LlC~~~~~~~---~C-----------g-~C~~C~~~~~~~HPD~~~i~p~~~~i~ 91 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALW--LAKSLFCLERNGVE---PC-----------G-TCTNCKRIESGNHPDVHLVAPDGQSIK 91 (329)
T ss_pred CEEEEECCCCCCHHHHHHH--HHHHHCCCCCCCCC---CC-----------C-CCHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 1565578999889999999--99997399999999---88-----------7-888999987699997677456614077
Q ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCC
Q ss_conf 99999612897599822310133210001224643189996131100100123578887521--4334225631111222
Q gi|254780601|r 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPA 192 (573)
Q Consensus 115 ~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~ 192 (573)
.+|++.|.. .+..... -+.-|.+|+||||.|=. +.-+.+|+.+ |...-..++.++-+..
T Consensus 92 idqiR~L~~--------------~~~~~p~-~g~~KV~II~~Ae~m~~----~AaNALLKtLEEPp~~t~fIL~t~~~~~ 152 (329)
T PRK08058 92 KDQIRYLKE--------------EFSKSGV-ESNKKVYIIEHADKMTA----SAANSLLKFLEEPSGDTTAILLTENKHQ 152 (329)
T ss_pred HHHHHHHHH--------------HHCCCCC-CCCCEEEEEECHHHHCH----HHHHHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf 999999999--------------9643875-78867999734776299----9999999986468978679987299666
No 305
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.26 E-value=0.52 Score=26.00 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 464318999613110010012357888752143342256311
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SA 187 (573)
+.+-+.++|||+---||.--...|...+.....++ |+++++
T Consensus 154 l~~p~IllLDEpTs~LD~~te~~i~~~l~~~~~~~-TvI~it 194 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSE 194 (275)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-EEEEEE
T ss_conf 51999899979766899999999999999972999-899994
No 306
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=90.26 E-value=1.4 Score=23.14 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=18.5
Q ss_pred EEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHHHH
Q ss_conf 99670227986889999775002899888300364188506761899999999985
Q gi|254780601|r 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 (573)
Q Consensus 470 ~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~~~ 525 (573)
.++.|.++++. |..|+.+... |=|.| +++=.++.+....+.++.
T Consensus 479 ~LSgGQrQRia---lARall~~~~--------iliLD-E~TSalD~~te~~i~~~l 522 (581)
T PRK11176 479 LLSGGQRQRIA---IARALLRDSP--------ILILD-EATSALDTESERAIQAAL 522 (581)
T ss_pred CCCHHHHHHHH---HHHHHHCCCC--------EEEEE-CCCCCCCHHHHHHHHHHH
T ss_conf 78999999999---9999967999--------89985-863358999999999999
No 307
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.09 E-value=1.4 Score=23.05 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=18.4
Q ss_pred EEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHHHH
Q ss_conf 99670227986889999775002899888300364188506761899999999985
Q gi|254780601|r 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525 (573)
Q Consensus 470 ~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~~~ 525 (573)
.++.|.++++. |.-++.+... |=|.|. .+-.++.+....+.+++
T Consensus 476 ~LSGGQrQRia---iARAll~~~~--------iliLDE-aTs~LD~~te~~i~~~l 519 (575)
T PRK11160 476 QLSGGEQRRLG---IARALLHDAP--------LLLLDE-PTEGLDAETERQILELL 519 (575)
T ss_pred CCCHHHHHHHH---HHHHHHCCCC--------EEEEEC-CCCCCCHHHHHHHHHHH
T ss_conf 59999999999---9999945999--------999849-86667999999999999
No 308
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.04 E-value=1.4 Score=23.02 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=52.5
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-H
Q ss_conf 969999289874689-99999999861042122556882799984998999999999999854469879999889987-9
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-H 115 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~ 115 (573)
+-.+-..|.|+|||. |..+.-. |.+..... ..| |.+ +..+..+.......+.-+-+.... .
T Consensus 39 HAYLFsGPrGvGKTTlArifAka--LnC~~~~~---~dp-----Cg~-------C~sC~~I~~g~h~DviEIdaasn~gI 101 (613)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKA--INCLNPKD---GDC-----CNS-------CSVCESINTNQSVDIVELDAASNNGV 101 (613)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HCCCCCCC---CCC-----CCC-------CHHHHHHHCCCCCCEEEEECCCCCCH
T ss_conf 22775589984889999999999--66999999---998-----888-------87899985699998688406555788
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCC
Q ss_conf 9999612897599822310133210001224643189996131100100123578887521--433422563111122
Q gi|254780601|r 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISP 191 (573)
Q Consensus 116 ~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~ 191 (573)
++++.|... +.... ..+.-+.+|+||||+|=.- .-+.+|+.+ |+..-..++-.|-|.
T Consensus 102 DeIReLie~--------------~~~~P-~~gkyKV~IIDEah~Ln~~----AaNALLKtLEEPP~~viFIL~Ttep~ 160 (613)
T PRK05896 102 DEIRNIIDN--------------INYLP-TTFKYKVYIIDEAHMLSTS----AWNALLKTLEEPPKHVVFIFATTEFQ 160 (613)
T ss_pred HHHHHHHHH--------------HCCCC-CCCCCEEEEECCHHHCCHH----HHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 999999997--------------08587-5799459998162217999----99999985348987837999828815
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.00 E-value=1.4 Score=23.00 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=10.0
Q ss_pred HHHHCCCCEEEEECC
Q ss_conf 996128975998223
Q gi|254780601|r 118 RRDLQNGAHIVVGTP 132 (573)
Q Consensus 118 ~~~l~~~~~iiv~TP 132 (573)
...+..|++++=.||
T Consensus 93 ~~~~~~~~~~~~~~~ 107 (407)
T PRK12726 93 LEMLAAGAELAQSTP 107 (407)
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 999862875367887
No 310
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=89.79 E-value=0.46 Score=26.34 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEE-----EC--CCCHHHHHHHH
Q ss_conf 882799984998999999999999854469879999-----88--99879999961
Q gi|254780601|r 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-----IG--GVSVHRERRDL 121 (573)
Q Consensus 73 ~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~-----~g--g~~~~~q~~~l 121 (573)
...+-|.++|=|=+ ...|........+...+| +. |.++..+.+.|
T Consensus 102 G~~~LLYvAPERL~----~~~Fl~~L~~~~i~L~AvDEAHCvSQWGHDFRPeY~~L 153 (607)
T TIGR01389 102 GELKLLYVAPERLE----QDYFLNMLKRLTIALLAVDEAHCVSQWGHDFRPEYRRL 153 (607)
T ss_pred CCEEEEEECCHHHH----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 98157751671321----18999887319930899832502166888875658999
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=89.72 E-value=0.36 Score=27.03 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=17.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
.|.-+.+..+||||||- ++-+|..+.
T Consensus 62 ~Ge~vaIVG~sGSGKST--Ll~lL~gl~ 87 (282)
T cd03291 62 KGEMLAITGSTGSGKTS--LLMLILGEL 87 (282)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCCC
T ss_conf 99999999999981999--999995787
No 312
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=89.71 E-value=0.62 Score=25.44 Aligned_cols=69 Identities=28% Similarity=0.258 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
..++|-|.+|+-. .+..+++.|.-|||||-.-.-=+...+... ...+ -..|+|+=|+--|...-+-+..
T Consensus 8 ~~LN~~Q~~AV~~--~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~--gv~p---~~ILalTFTnkAA~Emk~Rl~~ 76 (722)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE--NASP---YSILAVTFTNKAAAEMRHRIEQ 76 (722)
T ss_pred HHCCHHHHHHHCC--CCCCEEEEECCCCHHHHHHHHHHHHHHHCC--CCCH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8269999999809--999879997387159999999999999829--9987---8828984589999999999998
No 313
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=89.61 E-value=0.73 Score=25.00 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=37.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861042122556882799984998999999999999854
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
.|+-+++....|||||. |++-.+.......+ -++.+-|.|...++.+.+.+++-
T Consensus 22 ~g~~~lI~G~pGsGKT~-f~~qfl~~~~~~ge---------~vlyvs~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTI-FALQFLYEGAREGE---------PVLYVSTEESPEELLENARSFGW 75 (260)
T ss_pred CCCEEEEEECCCCCHHH-HHHHHHHHHHHCCC---------EEEEEEEECCHHHHHHHHHHCCC
T ss_conf 99789999389986899-99999997762698---------58999920698999999988099
No 314
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.60 E-value=1.5 Score=22.80 Aligned_cols=71 Identities=27% Similarity=0.242 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 789899999999975996999928987468999999999861042122556882799984998999999999999854
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
.++|-|.+++... ...+++.|.-|||||-.-.-=+...+.... . ..-+.|.++=|+-.|..+-+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~--v---~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGG--V---DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHHCCC--C---CHHHEEEEEEEHHHHHHHHHHHHHHHC
T ss_conf 9998999986188--998699957998618999999999987389--5---757717789676999999999998738
No 315
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.28 E-value=1.6 Score=22.64 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 46431899961311001001235788875214334225631
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~S 186 (573)
..+-+.+++||.--+||..-..++..++..+.+.-.|+++.
T Consensus 152 a~~P~iLiLDEPTs~LD~~~~~~i~~~l~~L~~~g~TvI~i 192 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYI 192 (274)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 82999999979866789999999999999998689999998
No 316
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=89.28 E-value=1.6 Score=22.64 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
.|.-+.+..++|||||. ++-++..+
T Consensus 29 ~G~~v~ivG~sGsGKST--Ll~ll~gl 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKST--LLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCC
T ss_conf 99999999999985999--99999672
No 317
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=89.28 E-value=0.63 Score=25.43 Aligned_cols=136 Identities=19% Similarity=0.163 Sum_probs=64.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHHHHHH-----HHCCCEEEEEE
Q ss_conf 59969999289874689999999998610421-2255688279998499899999999999985-----44698799998
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLY-----AKTGVVVAVCI 109 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~-~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~-----~~~~~~v~~~~ 109 (573)
.|.-+.+..+.|||||- ++=++..+..... .... .-+.+--.|.++++.++.-....+. ...+-.+..+-
T Consensus 24 ~Ge~~~liG~nGsGKTT--Ll~~i~G~~~~~~G~I~~--~g~~i~~~~~~~~~~~i~~v~Q~l~~~~l~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKST--LLKTLAGLLKPSSGEILL--DGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHCCCCCCCCEEEE--CCEECCCCCHHHHHCCCCHHHHHHHHCCCHHHHCCCHHHCC
T ss_conf 99799999899988999--999995798998728999--99998969999995546499999998599778649910379
Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CEEEEECC
Q ss_conf 89987999996128975998223101332100012246431899961311001001235788875214334-22563111
Q gi|254780601|r 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLMFSAT 188 (573)
Q Consensus 110 gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~-q~~l~SAT 188 (573)
|| .+|+-++.. --+.+-+.+++||.---||..-..++..++..+.+.. -+++++.-
T Consensus 100 GG---qkQrv~iA~--------------------aL~~~P~ililDEPts~LD~~~~~~i~~~i~~l~~~~~~tii~itH 156 (180)
T cd03214 100 GG---ERQRVLLAR--------------------ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred HH---HHHHHHHHH--------------------HHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99---999999999--------------------9986896478858754479999999999999999846989999907
Q ss_pred CCCCCHHHHH
Q ss_conf 1222001111
Q gi|254780601|r 189 ISPAITTLAK 198 (573)
Q Consensus 189 ~~~~i~~l~~ 198 (573)
--..+..++.
T Consensus 157 dl~~~~~~~d 166 (180)
T cd03214 157 DLNLAARYAD 166 (180)
T ss_pred CHHHHHHHCC
T ss_conf 9899999799
No 318
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.23 E-value=1.6 Score=22.62 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=79.3
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-H
Q ss_conf 969999289874689-99999999861042122556882799984998999999999999854469879999889987-9
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-H 115 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~ 115 (573)
+-.+-..+-|+|||. |..+. ..|...... ...|.. .+..+..+.......+.-+-+..+. .
T Consensus 37 HAYLFsGPrGvGKTt~ArifA--kaLnC~~~~---~~~PCg------------~C~sC~~i~~g~hpDViEiDaasn~gI 99 (523)
T PRK08451 37 HAYLFSGLRGSGKTSSARIFS--RALVCEQGP---SSTPCG------------TCAQCQAALEGRHIDIIEMDAASNRGI 99 (523)
T ss_pred CEEEEECCCCCCHHHHHHHHH--HHHCCCCCC---CCCCCC------------CCHHHHHHHCCCCCCEEEECCCCCCCH
T ss_conf 158757899868899999999--997599999---989888------------788899986489998551055333689
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 9999612897599822310133210001224643189996131100100123578887521--43342256311112220
Q gi|254780601|r 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 116 ~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
++++.|... +--+| ..+.-+.+|+||||.|-.- .-+.+|+.+ |...-..++-+|-|..+
T Consensus 100 D~IReLie~---~~~~P------------~~gryKV~IIDEah~Lt~~----A~NALLKTLEEPP~~vvFILaTTep~KL 160 (523)
T PRK08451 100 DDIRNLIEQ---TKYKP------------SMARFKIFIIDEVHMLTKE----AFNALLKTLEEPPSYVKFILATTDPLKL 160 (523)
T ss_pred HHHHHHHHH---HCCCC------------CCCCEEEEEEECCCCCCHH----HHHHHHHHCCCCCCCCEEEEECCCHHHC
T ss_conf 999999997---23588------------6797279998260304899----9999999703898783799975994768
Q ss_pred H-HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHH----HHHHHHCCCCCC---------CCEEEEECCCHHHHHH
Q ss_conf 0-1111210123333233323256652000000000002----455420010235---------6416775130233456
Q gi|254780601|r 194 T-TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR----DNAIVNILRYHG---------AKNAIVFCSTRASVSR 259 (573)
Q Consensus 194 ~-~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k----~~~l~~ll~~~~---------~~~~ivF~~t~~~~~~ 259 (573)
. .+..+-+ .+.... .....|..+.-.+...+. .++|.-+....+ -.++|.||+..-..+.
T Consensus 161 p~TIlSRCQ----~f~Fk~--I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalslLdQ~i~~~~~~i~~~~ 234 (523)
T PRK08451 161 PATILSRTQ----HFRFKQ--IPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTLLDQAIIFCKNAITESK 234 (523)
T ss_pred HHHHHHHHH----CCCCCC--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 488874203----110337--99999999999999983998799999999997789486898799999984799877999
Q ss_pred HHHHHH
Q ss_conf 555554
Q gi|254780601|r 260 FTKVLA 265 (573)
Q Consensus 260 l~~~L~ 265 (573)
+.+.|.
T Consensus 235 v~~~lG 240 (523)
T PRK08451 235 VADMLG 240 (523)
T ss_pred HHHHHC
T ss_conf 999858
No 319
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.18 E-value=0.63 Score=25.42 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=35.8
Q ss_pred HCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 448814998538650014578873389705887478999860301037888602564059999999999998506641
Q gi|254780601|r 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368 (573)
Q Consensus 291 r~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~ 368 (573)
++.-++++.+-|-+-.|-||-++ || ...|.-| +-.+-+|+ +..++.+|...+...+++.-..++
T Consensus 327 ~dnpir~if~vd~lnegwdvlnl-----fd----mr~i~rr-k~~an~kk----~~~~TikekQLIGRGaRY~PFa~~ 390 (812)
T COG3421 327 RDNPIRVIFSVDKLNEGWDVLNL-----FD----MRGIKRR-KKMANDKK----LAAATIKEKQLIGRGARYFPFAFE 390 (812)
T ss_pred CCCCEEEEEEEECCCCCCHHHHH-----HH----HHHHHHH-HHHHCCCC----HHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 37873799974000353056655-----33----7778888-75403553----345445178887255620655565
No 320
>KOG0347 consensus
Probab=88.95 E-value=0.62 Score=25.46 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=43.3
Q ss_pred EEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 167751302334565555542----266630104899999999998665448814998538
Q gi|254780601|r 246 NAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 246 ~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
.++||+.|+.-+..+...|.. -|+.+..|.|+|.+....+.+++ .-+|.|||-
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHC----CCCEEEECC
T ss_conf 038963709999999999998613467278875230579999999852----998799366
No 321
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=88.53 E-value=1.2 Score=23.43 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCC--CCEEEEECCCCC
Q ss_conf 99999999866544-88149985386500145788--733897058874
Q gi|254780601|r 279 SQQERSNALQMMRD-GRARVCIATDVAARGIDLPD--LELVIHAELSSN 324 (573)
Q Consensus 279 ~q~~R~~~~~~fr~-g~~~vLV~TDvaaRGiDi~~--v~~Vin~d~P~~ 324 (573)
+..+...+++.|++ ++-.||+|+.=.+.|||+++ ...||-..+|..
T Consensus 32 ~~~~~~~~l~~f~~~~~~avL~~vg~~sEGIDf~~d~~r~vii~glPfp 80 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCEEEEEEECCCCC
T ss_conf 9224999999999836880999703433442059845569999447889
No 322
>PRK05748 replicative DNA helicase; Provisional
Probab=88.28 E-value=1.9 Score=22.20 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=26.4
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCC-CCCCCHHHHHHHH
Q ss_conf 024554200102--35641677513023345655555422--6663010-4899999999998
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVAL-SGELSQQERSNAL 287 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~l-hg~~~q~~R~~~~ 287 (573)
-|..+..++... .+..+.+.|.+--...+++...|... +++...+ .|.++..+..++.
T Consensus 215 GKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l~~R~la~~s~v~~~~i~~g~l~~~~~~~~~ 277 (448)
T PRK05748 215 GKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGRIDQQKLRTGQLTDEDWPKLT 277 (448)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHH
T ss_conf 768999999999998569808998177888899999999974677777762899999999999
No 323
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.09 E-value=1 Score=24.06 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=6.2
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 99777998899999
Q gi|254780601|r 1 MKIFENIPQVIGEA 14 (573)
Q Consensus 1 m~~f~~l~~~l~~~ 14 (573)
|+.|.++=+.+.+-
T Consensus 1 ~~~~~~~w~~lkrL 14 (593)
T PRK10790 1 MRSFSQLWPTLKRL 14 (593)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 92599999999999
No 324
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=88.09 E-value=1.9 Score=22.12 Aligned_cols=129 Identities=20% Similarity=0.223 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHC-----CCCCCCHHHH-HHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 988999999978-----7987898999-999999759---9699992898746899999999986104212255688279
Q gi|254780601|r 7 IPQVIGEALSER-----GYVNLTSVQE-AILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77 (573)
Q Consensus 7 l~~~l~~~l~~~-----g~~~pt~iQ~-~~ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~ 77 (573)
+|+.+.+++.+. -|-.|+.-.- ++| .-..| .++++ |.|=+-.. -++-+... .-.+
T Consensus 34 ~p~~v~~ai~~~~~~~~rYPd~~~~~Lr~~i-A~~~gv~~~~I~v----gnGs~Eli--~~i~~~~~---------~~~~ 97 (356)
T PRK08056 34 MPVSVKRALIDNLDCIERYPDADYFHLHQAL-ARHHQVPASWILA----GNGETESI--FTVASGLK---------PRRA 97 (356)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHCCCHHHEEE----CCCHHHHH--HHHHHHCC---------CCCE
T ss_conf 9999999999747577419982489999999-9982988899887----58789999--99998548---------9966
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCEEEEEE----CCCCH-HHHHHHHCCCCE-EEEECC----CCHHHHHH-CCCCC-
Q ss_conf 99849989999999999998544698799998----89987-999996128975-998223----10133210-00122-
Q gi|254780601|r 78 LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSV-HRERRDLQNGAH-IVVGTP----GRLCDHIR-GKGLN- 145 (573)
Q Consensus 78 lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~----gg~~~-~~q~~~l~~~~~-iiv~TP----grl~d~~~-~~~l~- 145 (573)
+|+.|| +.+........+..+..+. .+... .....++...++ |+||+| |.+.+--. +..+.
T Consensus 98 ~i~~Pt-------f~~Y~~~a~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~ 170 (356)
T PRK08056 98 MIVTPG-------FAEYGRALAQVGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIADR 170 (356)
T ss_pred EEECCC-------HHHHHHHHHHCCCEEEEEECCHHHCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 997887-------4999999998597699986773315897699997336788889981899998875899999999987
Q ss_pred CCCC-EEEEEECCC
Q ss_conf 4643-189996131
Q gi|254780601|r 146 ISHL-KAVVLDEAD 158 (573)
Q Consensus 146 l~~v-~~lVlDEaD 158 (573)
+... -.+|+|||=
T Consensus 171 ~~~~~~~vvvDEAY 184 (356)
T PRK08056 171 CKSLNINLILDEAF 184 (356)
T ss_pred HHCCCEEEEEEHHH
T ss_conf 24049399974455
No 325
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=87.95 E-value=1.5 Score=22.91 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=56.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4167751302334565555542266630104899999999998665448814998--53865001457887338970588
Q gi|254780601|r 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI--ATDVAARGIDLPDLELVIHAELS 322 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV--~TDvaaRGiDi~~v~~Vin~d~P 322 (573)
+++|.||+.+-..+.+..-|. -+.+..=...++.+-+|...-|+ ...++.+|+|+..+ =
T Consensus 222 dQaia~~~g~~~~~~v~~mLG-----------~~d~~~~~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~--------l 282 (816)
T PRK07003 222 DQAIAYSANEVTETAVSGMLG-----------ALDQTYMVRLLDALAAADGPEILAIADEMSLRSLSFSTA--------L 282 (816)
T ss_pred HHHHHHCCCCCCHHHHHHHHC-----------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH--------H
T ss_conf 999984699737999999858-----------887789999999999558999999999999868899999--------9
Q ss_pred CCHHHHHHHHCCCCCCCC-----CCE--EE----EEECHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 747899986030103788-----860--25----6405999999999999850664105689
Q gi|254780601|r 323 SNPENLLHRSGRTGRAGR-----KGM--SV----FVIPQNMQRRAERLFREANVSVVWEPAP 373 (573)
Q Consensus 323 ~~~~~yvHR~GRtgRag~-----~G~--ai----~l~~~~e~~~~~~i~~~~~~~~~~~~~P 373 (573)
.+..+.+||+--.--... ... .| ..+++++...+.+|.-..+..+.+.+-|
T Consensus 283 ~~l~~~lh~ia~~q~~p~~~~~~~~~~~~~~~la~~~~~e~~Ql~Yqi~l~gr~dl~~ap~~ 344 (816)
T PRK07003 283 QDLASLLHRIAWAQFAPGSVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDE 344 (816)
T ss_pred HHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCHHHCCCCCCC
T ss_conf 99999999999998461000234621899999997289999999999997034431349881
No 326
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=87.93 E-value=0.46 Score=26.31 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=18.0
Q ss_pred HHHHHHCCCCEEEE--CCCCCCHHHHH
Q ss_conf 99999759969999--28987468999
Q gi|254780601|r 30 ILNPDLREKDVLVS--AQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i~~--a~TGsGKT~af 54 (573)
.+..+++|.|..+. .|||||||...
T Consensus 65 lv~~~l~G~n~ti~aYGqTGSGKTyTm 91 (321)
T cd01374 65 VVRSALEGYNGTIFAYGQTSSGKTFTM 91 (321)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCEEC
T ss_conf 999985897347996268899983574
No 327
>PRK08082 consensus
Probab=87.82 E-value=2 Score=22.02 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCC--C-CCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 024554200102--3-564167751302334565555542--26663010-4899999999998665
Q gi|254780601|r 230 DRDNAIVNILRY--H-GAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNALQMM 290 (573)
Q Consensus 230 ~k~~~l~~ll~~--~-~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~~~f 290 (573)
-|..+..++... . ....++ |+.--...+++...+.. .|++...+ +|.++..+..++....
T Consensus 215 GKTa~alnia~~~a~~~~~~V~-~fSlEM~~~~l~~R~la~~s~i~~~~i~~g~l~~~e~~~i~~a~ 280 (453)
T PRK08082 215 GKTAFALNIAQNVATKTDENVA-IFSLEMGADQLVMRMLCAEGNIDAQRLRTGSLTSDDWGKLTMAM 280 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 5789999999999985599489-97313898999999997155888667751899999999999999
No 328
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=87.77 E-value=2 Score=21.99 Aligned_cols=244 Identities=23% Similarity=0.275 Sum_probs=105.2
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC------C--CCCCCCEEEEEC
Q ss_conf 99999997879878989999999997599699992898746899999999986104212------2--556882799984
Q gi|254780601|r 10 VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR------F--SPASAPLALAIA 81 (573)
Q Consensus 10 ~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~------~--~~~~~~~~lil~ 81 (573)
.+.+.+.+.|+.+.... -+|.|-=|.=.+ -|||||= +++-+++.+.....+ . ....+| +++.
T Consensus 17 ~lR~~ly~~~~~k~~~~---~vpVI~VGNit~----GGtGKTP-~v~~l~~~l~~~g~~~~ilSRGYg~~~~~~--~~v~ 86 (318)
T pfam02606 17 ALRRALYRRGILKSYRL---PVPVIVVGNITV----GGTGKTP-LVIALAELLRARGLRPGVLSRGYGGKSKGP--VLVD 86 (318)
T ss_pred HHHHHHHHCCCCCCCCC---CCCEEEECCEEE----CCCCHHH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCC--EEEC
T ss_conf 99999986055563448---999999989845----8878589-999999999976994478326767657887--8971
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC--
Q ss_conf 99899999999999985446987999988998799999612-897599822310133210001224643189996131--
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD-- 158 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD-- 158 (573)
+. .=+.++-+|-..++...++.| +++.....--...++ .++||||.-=| +....+ -.++..+++|-..
T Consensus 87 ~~-~~~~~~GDEp~lla~~~~~~v--~V~~~R~~a~~~l~~~~~~dviIlDDG-----fQh~~l-~rDl~Ivl~d~~~~f 157 (318)
T pfam02606 87 PG-SSAAEVGDEPLLLARRTPVPV--VVGPDRAAAARALLEAHGADVIILDDG-----FQHYRL-ARDLEIVVVDGARGF 157 (318)
T ss_pred CC-CCHHHCCCHHHHHHHHCCCCE--EECCCHHHHHHHHHHHCCCCEEEECCC-----CCCCCC-CCCEEEEEECCCCCC
T ss_conf 68-894673969999987569859--980528999999998489979991486-----667300-188689997288788
Q ss_pred ---CCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHH
Q ss_conf ---100100-1235788875214334225631111222001111210123333233323256652000000000002455
Q gi|254780601|r 159 ---EMLDLG-FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234 (573)
Q Consensus 159 ---~ml~~g-f~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~ 234 (573)
.+|-.| .+|.+..+ +....++++-. +...... ...|... .... + ..+..+....
T Consensus 158 gng~lLPaGpLREp~~~l-----~raD~ii~~~~-~~~~~~~----~~~~~~~----~~~~-~---~~~~~~~~~~---- 215 (318)
T pfam02606 158 GNGRLLPAGPLREPLSRL-----KRADAVILNGG-EAADPEI----AEAPVLR----ARLE-P---SAAVNLADGE---- 215 (318)
T ss_pred CCCCCCCCCCCCCCHHHH-----CCCCEEEECCC-CCCHHHH----HHCCHHH----EEEE-E---EEEEECCCCC----
T ss_conf 799778581354896587-----00399999398-5321134----4323011----4885-0---0447427732----
Q ss_pred HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC-C----CCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 420010235641677513023345655555422666301-0----4899999999998665448814998538
Q gi|254780601|r 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA-L----SGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 235 l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~-l----hg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
.......+++.||. ...-+...+.|.+.|+.+.. + |-..++++=....+..+.. .||||.
T Consensus 216 ----~~~l~~~~v~a~sG-IanP~~F~~~L~~~g~~i~~~~~f~DHh~y~~~dl~~i~~~a~~~---~iitTE 280 (318)
T pfam02606 216 ----RRPLAGKRVLAFAG-IGNPQRFFDTLRALGLEVVATLAFPDHHPFTAADLAFLEAEAKEP---GLVTTE 280 (318)
T ss_pred ----CCCCCCCEEEEEEE-CCCHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCC---CEEECC
T ss_conf ----00016984899996-478799999999769878786777887779999999999865699---758741
No 329
>KOG0745 consensus
Probab=87.60 E-value=1.2 Score=23.47 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=16.6
Q ss_pred HHHHHHHHCC-----CCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 0245542001-----02356416775130233456555
Q gi|254780601|r 230 DRDNAIVNIL-----RYHGAKNAIVFCSTRASVSRFTK 262 (573)
Q Consensus 230 ~k~~~l~~ll-----~~~~~~~~ivF~~t~~~~~~l~~ 262 (573)
|-.-.|.+|| +.+...+.|||- .+++.++.
T Consensus 271 DVEsvi~KLl~~A~~nVekAQqGIVfl---DEvDKi~~ 305 (564)
T KOG0745 271 DVESVIQKLLQEAEYNVEKAQQGIVFL---DEVDKITK 305 (564)
T ss_pred CHHHHHHHHHHHCCCCHHHHHCCEEEE---EHHHHHCC
T ss_conf 299999999997257899882673887---60124413
No 330
>PRK08506 replicative DNA helicase; Provisional
Probab=87.58 E-value=2.1 Score=21.92 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 024554200102--3564167751302334565555542--26663010-4899999999998665
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNALQMM 290 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~~~f 290 (573)
-|..+..++... .....+++| .--...++|+..+.. .+++...+ .|.|+..+..++....
T Consensus 205 GKTAfAlniA~~~a~~~~~V~~F-SLEMs~~ql~~Rlls~~s~V~~~~lr~g~l~~~e~~~~~~a~ 269 (473)
T PRK08506 205 GKTTLVLNMVLKALNQGKGVAFF-SLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWENLSDAC 269 (473)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 67899999999999659965898-224799999999999728878310006899999999999999
No 331
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.58 E-value=2.1 Score=21.92 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 464318999613110010012357888752143342256311112220011112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
..+-+.++|||--.=||...++.+..++..+.+.-.++++|.---.++..++.+
T Consensus 111 ~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~~~~~~dr 164 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE
T ss_conf 649999999088657999999999999999996899999992838999986999
No 332
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.51 E-value=0.32 Score=27.38 Aligned_cols=15 Identities=47% Similarity=0.780 Sum_probs=10.2
Q ss_pred CCEEEECCCCCCHHH
Q ss_conf 969999289874689
Q gi|254780601|r 38 KDVLVSAQTGSGKTV 52 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~ 52 (573)
.|++...|||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred CCEEEECCCCCCHHH
T ss_conf 317998889975779
No 333
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=87.47 E-value=0.54 Score=25.86 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=18.3
Q ss_pred HHHHHHCCCCEEEE--CCCCCCHHHHH
Q ss_conf 99999759969999--28987468999
Q gi|254780601|r 30 ILNPDLREKDVLVS--AQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i~~--a~TGsGKT~af 54 (573)
.+..+++|.++.+. .|||||||...
T Consensus 70 lv~~~l~G~n~ti~aYGqTGSGKTyTm 96 (328)
T cd00106 70 LVESVLEGYNGTIFAYGQTGSGKTYTM 96 (328)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 999996888669999689999854074
No 334
>pfam11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3. This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus.
Probab=87.46 E-value=1.9 Score=22.22 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=75.5
Q ss_pred CCCCCCHHHHHHHHCCCC----CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC-CCEEEE
Q ss_conf 000000024554200102----356416775130233456555554226663010489999999999866544-881499
Q gi|254780601|r 224 VLVALSDRDNAIVNILRY----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD-GRARVC 298 (573)
Q Consensus 224 ~~v~~~~k~~~l~~ll~~----~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~-g~~~vL 298 (573)
+.+..+.|+.+|..|++. +....++|+|+..+..+-+-.+|..+++...-+.|.+...+... ...++. -.+.|-
T Consensus 89 ~~~~tSgKF~~L~~Li~~~~~~~~~~~ilIv~~~~k~ldLlE~~llgk~~~y~r~~g~~~~~~~~~-~~~~k~~~s~~I~ 167 (278)
T pfam11496 89 HLAETSGKFLVLNDLINLLIPSERDLHVLIISRSGKTLDLVEALLLGKGLKYKRLSGESLYEENHK-VSDKKGSLSFWIH 167 (278)
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-CCCCCCCCEEEEE
T ss_conf 999823339999999999873457837999978953799999997258646760788767665545-6555788406999
Q ss_pred EEC-CCC----CCCCCCCCCCEEEEECCCCCHH-HHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 853-865----0014578873389705887478-99986030103788860256405
Q gi|254780601|r 299 IAT-DVA----ARGIDLPDLELVIHAELSSNPE-NLLHRSGRTGRAGRKGMSVFVIP 349 (573)
Q Consensus 299 V~T-Dva----aRGiDi~~v~~Vin~d~P~~~~-~yvHR~GRtgRag~~G~ai~l~~ 349 (573)
.+| |-. .-..+-..++.||-||.--|.+ -.+...=.+.|.|+.--.|-++.
T Consensus 168 l~~~~~~~~~~~~~~~~~~~d~Iia~D~s~d~~~p~ie~lR~~~~~~~~~PvirLv~ 224 (278)
T pfam11496 168 LTTSDGLTNTDSSLLSNYKFDLIISFDPSLDTSLPSIESLRTTNRRGRLTPIIRLVV 224 (278)
T ss_pred EECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 706877545788844356527799956887989748999986344899887799952
No 335
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=87.43 E-value=0.52 Score=26.00 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=17.5
Q ss_pred EEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHH
Q ss_conf 897058874789998603010378886025640599
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~ 351 (573)
=|+||+|++..- ||-+-=+.. .|..|.+|.|.
T Consensus 339 ~i~f~FaNs~QG-V~dvSF~~K---AG~TvAIVGPT 370 (592)
T TIGR01192 339 DITFEFANSSQG-VFDVSFEAK---AGQTVAIVGPT 370 (592)
T ss_pred EEEECCCCCCCC-CEEEEEEEE---CCCEEEEECCC
T ss_conf 531047876688-300036652---47568987789
No 336
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.42 E-value=1.6 Score=22.64 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=18.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
.|.-+.+..++|||||. ++-+|..+.
T Consensus 28 ~Ge~vaivG~sGsGKST--Ll~ll~gl~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTT--LINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCCC
T ss_conf 99999999999980999--999996686
No 337
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=87.38 E-value=0.9 Score=24.37 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 96999928987468999999999861042
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAEN 66 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~ 66 (573)
-.+.+.+.||||||. |++.++..+...-
T Consensus 14 FrmaivGgSGSGKT~-yLlsLf~tlv~ky 41 (241)
T pfam04665 14 FRMAIVGGSGSGKTT-YLLSLLRTLVRKF 41 (241)
T ss_pred CEEEEEECCCCCHHH-HHHHHHHHHHHHH
T ss_conf 359998158875669-9999999997741
No 338
>PRK04328 hypothetical protein; Provisional
Probab=87.28 E-value=1.4 Score=23.15 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
.|.-+++..++|||||. |++-.+..-....+ .+|+++ +-|-..|+.+.+..++
T Consensus 23 ~gs~~Lv~G~pGtGKT~-la~qFl~~g~~~GE--------~~lyis-~eE~~~~l~~~~~~~G 75 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSI-FSQQFLWNGLQMGE--------PGIYVA-LEEHPVQVRRNMAQFG 75 (250)
T ss_pred CCEEEEEEECCCCCHHH-HHHHHHHHHHHCCC--------CEEEEE-EECCHHHHHHHHHHCC
T ss_conf 99699998289999899-99999999987699--------779999-7279999999999809
No 339
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=87.22 E-value=0.63 Score=25.40 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCEEEE--CCCCCCHHHHH
Q ss_conf 999999759969999--28987468999
Q gi|254780601|r 29 AILNPDLREKDVLVS--AQTGSGKTVAF 54 (573)
Q Consensus 29 ~~ip~~l~g~d~i~~--a~TGsGKT~af 54 (573)
-.+..+++|.|..+. .|||||||...
T Consensus 14 plv~~~l~G~n~ti~aYGqTGSGKTyTm 41 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 9999997887469999679999875282
No 340
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.17 E-value=2.2 Score=21.77 Aligned_cols=118 Identities=23% Similarity=0.243 Sum_probs=51.1
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HH
Q ss_conf 69999289874689-99999999861042122556882799984998999999999999854469879999889987-99
Q gi|254780601|r 39 DVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HR 116 (573)
Q Consensus 39 d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~~ 116 (573)
-.+-..+-|+|||- |-.+ ...|...... ....| |.+ +..+..+..+....|.-+-+...- .+
T Consensus 41 AyLF~GprGtGKTT~Aril--AkaLnC~~~~--~~~~p-----------Cg~-C~~C~~I~~g~~~DViEiDaAs~~gVd 104 (462)
T PRK06305 41 AYLFSGIRGTGKTTLARIF--AKALNCQNPT--EDQEP-----------CNQ-CAICKEISSGTSLDVIEIDGASHRGIE 104 (462)
T ss_pred EEEEECCCCCCHHHHHHHH--HHHHCCCCCC--CCCCC-----------CCC-CHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 3430389985999999999--9996799998--88898-----------876-688899863899986864355344668
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC---CCCCCEEEEECCCCCC
Q ss_conf 999612897599822310133210001224643189996131100100123578887521---4334225631111222
Q gi|254780601|r 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKKRRMLMFSATISPA 192 (573)
Q Consensus 117 q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~---p~~~q~~l~SAT~~~~ 192 (573)
+++.|.+. +--+| .-++-|.+||||||.|-.-.| +.+|+.+ |... ..+|-.|-|..
T Consensus 105 dIRel~e~---v~~~P------------~~~~yKVyIIDEvhmLs~~Af----NALLKtLEEPP~~v-~FILaTTe~~K 163 (462)
T PRK06305 105 DIRQINET---VLFTP------------SKSQYKIYIIDEVHMLTKEAF----NSLLKTLEEPPQHV-KFFLATTEIHK 163 (462)
T ss_pred HHHHHHHH---HCCCC------------CCCCEEEEEEECHHHCCHHHH----HHHHHHHHCCCCCE-EEEEEECCHHH
T ss_conf 99999977---10088------------677505999815211799999----99999861898774-99998188142
No 341
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=87.13 E-value=0.55 Score=25.82 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHH
Q ss_conf 999997599699--992898746899
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVA 53 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~a 53 (573)
.|..+++|.+.. +-.|||||||..
T Consensus 73 lv~~~l~G~n~ti~aYGqTGSGKTyT 98 (352)
T cd01364 73 ILDEVLMGYNCTIFAYGQTGTGKTYT 98 (352)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCEEE
T ss_conf 99999778855999877889993499
No 342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=87.05 E-value=0.41 Score=26.65 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=12.5
Q ss_pred CCCEEEECCCCCCHHH
Q ss_conf 9969999289874689
Q gi|254780601|r 37 EKDVLVSAQTGSGKTV 52 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~ 52 (573)
-.|++...|||||||+
T Consensus 109 KsNILliGPTG~GKTl 124 (411)
T PRK05342 109 KSNILLIGPTGSGKTL 124 (411)
T ss_pred CCCEEEECCCCCCHHH
T ss_conf 4538998999977889
No 343
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=87.03 E-value=0.59 Score=25.63 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=17.2
Q ss_pred HHHHHHCCCCE--EEECCCCCCHHHH
Q ss_conf 99999759969--9992898746899
Q gi|254780601|r 30 ILNPDLREKDV--LVSAQTGSGKTVA 53 (573)
Q Consensus 30 ~ip~~l~g~d~--i~~a~TGsGKT~a 53 (573)
.+..+++|.+. ++-.|||||||..
T Consensus 80 lv~~~l~G~n~ti~aYGqTGSGKTyT 105 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYT 105 (356)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEE
T ss_conf 99999789857999878899983768
No 344
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.94 E-value=2.3 Score=21.69 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=17.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
.|.-+.+..++|||||. ++-+|..+
T Consensus 27 ~Ge~i~IvG~sGsGKST--Ll~ll~gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKST--LVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCC
T ss_conf 99999999899982999--99999667
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.90 E-value=2.3 Score=21.67 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=31.1
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 46431899961311001001235788875214334225631111222001111
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~ 198 (573)
..+-+++++||.-.-||......+...++.. ..+++++.--...+..++.
T Consensus 86 ~~~p~iliLDEPt~~LD~~~~~~i~~~l~~~---~~tii~vsHd~~~~~~~~d 135 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHCC
T ss_conf 2599899995775558999999999999970---9999999679899998799
No 346
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=86.90 E-value=0.52 Score=25.95 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=17.4
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHH
Q ss_conf 999997599699--992898746899
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVA 53 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~a 53 (573)
.++.+++|.|.. +-.|||||||..
T Consensus 72 lv~~~l~G~n~ti~aYGqTGSGKTyT 97 (334)
T cd01375 72 VVDSALDGYNGTIFAYGQTGAGKTFT 97 (334)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf 99998588725799713568997588
No 347
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=86.89 E-value=0.56 Score=25.79 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=17.3
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHHH
Q ss_conf 999997599699--9928987468999
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~af 54 (573)
.++.+++|.+.. +-.|||||||...
T Consensus 73 lv~~~l~G~n~ti~aYGqTGSGKTyTm 99 (333)
T cd01371 73 LVDSVLEGYNGTIFAYGQTGTGKTFTM 99 (333)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCEEEC
T ss_conf 999984887448997436899871774
No 348
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=86.88 E-value=0.72 Score=25.03 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=37.6
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 4643189996131100100123578887521433422563111122200111121
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~ 200 (573)
++---+.++||+|-.||......+...++.+.++.|.+.. |.-++..+.+.++
T Consensus 178 ~~PaPfyllDEidaaLD~~~~~~v~~~ik~ls~~~QfI~i--thr~~~~~~Ad~~ 230 (243)
T cd03272 178 CDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITT--TFRPELLEVADKF 230 (243)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHE
T ss_conf 5998378871344015998999999999997349849999--8088999750643
No 349
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=86.68 E-value=0.62 Score=25.46 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=17.2
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHHH
Q ss_conf 999997599699--9928987468999
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~af 54 (573)
.|..+++|.+.. +-.|||||||...
T Consensus 72 lv~~~l~G~n~ti~aYGqTGSGKTyTm 98 (319)
T cd01376 72 IVPHLLSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 999986898559999678999874685
No 350
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=86.55 E-value=1.6 Score=22.69 Aligned_cols=49 Identities=29% Similarity=0.296 Sum_probs=28.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 99992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
+++..++|||||. |++-.+..-... +-.+|.++ +-|-..|+.+.+..++
T Consensus 2 tLi~G~pGsGKT~-~a~qfl~~~a~~--------ge~~lyis-~eE~~~~l~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTT-FALQFLYAGLAR--------GEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEECCCCCHHH-HHHHHHHHHHHC--------CCCEEEEE-ECCCHHHHHHHHHHCC
T ss_conf 1587689999999-999999999876--------99789999-5079999999999839
No 351
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=86.54 E-value=0.61 Score=25.52 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHHH
Q ss_conf 999997599699--9928987468999
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~af 54 (573)
.+..+++|.++. +-.|||||||...
T Consensus 68 lv~~~l~G~n~ti~aYGqTGSGKTyTm 94 (325)
T cd01369 68 IVDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCEE
T ss_conf 999996778646997457899986251
No 352
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=86.54 E-value=0.58 Score=25.68 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHHH
Q ss_conf 999997599699--9928987468999
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~af 54 (573)
.+..+++|.+.. +-.|||||||...
T Consensus 65 lv~~~l~G~n~ti~aYGqTGSGKTyTm 91 (341)
T cd01372 65 LVDGLFEGYNATVLAYGQTGSGKTYTM 91 (341)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 999986777516999714788986441
No 353
>KOG0246 consensus
Probab=86.52 E-value=0.93 Score=24.28 Aligned_cols=11 Identities=45% Similarity=0.734 Sum_probs=5.3
Q ss_pred CCCC--CCCCCCC
Q ss_conf 8650--0145788
Q gi|254780601|r 302 DVAA--RGIDLPD 312 (573)
Q Consensus 302 Dvaa--RGiDi~~ 312 (573)
|+|. ||-|-.+
T Consensus 445 DLAGnERGaDts~ 457 (676)
T KOG0246 445 DLAGNERGADTSS 457 (676)
T ss_pred ECCCCCCCCCCCC
T ss_conf 7267756776543
No 354
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=86.46 E-value=0.6 Score=25.57 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.1
Q ss_pred HHHHHHCCCCE--EEECCCCCCHHHHH
Q ss_conf 99999759969--99928987468999
Q gi|254780601|r 30 ILNPDLREKDV--LVSAQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~--i~~a~TGsGKT~af 54 (573)
.+..+++|.+. ++-.|||||||...
T Consensus 80 lv~~~l~G~n~ti~aYGqTGSGKTyTm 106 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 999984887247999547889875242
No 355
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=86.46 E-value=1.6 Score=22.73 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=33.9
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 464318999613110010012357888752143342256311112220011112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
..+-+.++|||----||..-...+..+++.+.+.-.+++++..-..++..++.+
T Consensus 153 ~~~P~lLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tii~vsH~l~~~~~~aDr 206 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE
T ss_conf 569999999597557999999999999999996799999994758999996999
No 356
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=86.46 E-value=2.4 Score=21.52 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=57.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCC---CCCCCCCCCCEEEEECCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCCC
Q ss_conf 9699992898746899999999986104---2122556882799984998999999999-99985446987999988998
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVS 113 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~---~~~~~~~~~~~~lil~PTrELa~Qv~~~-~~~l~~~~~~~v~~~~gg~~ 113 (573)
.++++.++||.|||. |+++.... .........|-..|-+|..-=-...|.. +..++.. .+. ..+
T Consensus 62 p~lLlvGdsnnGKT~-----Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP--~~~-----~~~ 129 (302)
T pfam05621 62 PNLLLVGPTNNGKSM-----IVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAP--LRP-----RPR 129 (302)
T ss_pred CCEEEEECCCCCHHH-----HHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCC-----CCC
T ss_conf 755887079887899-----99999996799878666702189997699988689999999983787--788-----877
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHHHHHHCCCCCCEEE
Q ss_conf 7999996128975998223101332100012246431899961311001001235--7888752143342256
Q gi|254780601|r 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEFILDSSPKKRRMLM 184 (573)
Q Consensus 114 ~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~i~~~~p~~~q~~l 184 (573)
..+.... +..+ +.--+++++|+||.-.+|.-++.+. +-..++.+.++-|.-+
T Consensus 130 ~~~~~~~--------------~~~l-----l~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~Ipi 183 (302)
T pfam05621 130 LPEMEQL--------------ALAL-----LRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPL 183 (302)
T ss_pred HHHHHHH--------------HHHH-----HHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 8999999--------------9999-----9974987899854365604868899999999999863658786
No 357
>KOG1016 consensus
Probab=86.36 E-value=2.4 Score=21.48 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=79.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCC------------------CCCCCCCHHHHHHHHHHHHCCC---EEEEEEC
Q ss_conf 564167751302334565555542266630------------------1048999999999986654488---1499853
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVV------------------ALSGELSQQERSNALQMMRDGR---ARVCIAT 301 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~------------------~lhg~~~q~~R~~~~~~fr~g~---~~vLV~T 301 (573)
...+.|||.......+.+.+.|..+.+.|. -+.|--+..+|++.+++|.+-. .-+|+.|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHH
T ss_conf 47458884020148899999974331668999888841544430233304687665249999985168878524433310
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 86500145788733897058874789998603010378886025640
Q gi|254780601|r 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 (573)
Q Consensus 302 DvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~ 348 (573)
-.-+-||++-.-+-+|-||+-.++---.+-+-|.=|.|++-.|+.+-
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred CCCCCCCEEECCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 25643202321660799973057401320125566415747616875
No 358
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=86.36 E-value=0.62 Score=25.46 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHH
Q ss_conf 999997599699--992898746899
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVA 53 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~a 53 (573)
.+..+++|.+.. +-.|||||||..
T Consensus 66 lv~~~l~G~n~ti~aYGqTGSGKTyT 91 (337)
T cd01373 66 LVEDCLSGYNGSIFAYGQTGSGKTYT 91 (337)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCEEE
T ss_conf 99998588844899744788886179
No 359
>KOG2228 consensus
Probab=86.26 E-value=2.5 Score=21.45 Aligned_cols=49 Identities=31% Similarity=0.410 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCCCCHHHH--HHHHH-----HH--CCCCEEEECCCCCCHHH--HHHHHH
Q ss_conf 89999999787987898999--99999-----97--59969999289874689--999999
Q gi|254780601|r 9 QVIGEALSERGYVNLTSVQE--AILNP-----DL--REKDVLVSAQTGSGKTV--AFGLAL 58 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~iQ~--~~ip~-----~l--~g~d~i~~a~TGsGKT~--af~lp~ 58 (573)
..|.+.|-. -+...+-+|. +-+.. ++ ++..+++..|-|||||. ++.|.-
T Consensus 13 r~l~~rl~~-~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228 13 RILRERLCG-PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred HHHHHHHCC-CCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEHHHHHH
T ss_conf 999999627-876500058789999999999998447772699814778816740778766
No 360
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=86.24 E-value=1.5 Score=22.84 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=30.0
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 46431899961311001001235788875214334225631111222001111
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~ 198 (573)
..+-+.++|||----||..-..++..+++.+.+.-.|++++.--...+.+++.
T Consensus 148 ~~~P~lLlLDEPtsgLD~~~~~~~~~~i~~l~~~g~tii~vtHdl~~~~~~~d 200 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 66999999818866789999999999999999689999999079899999799
No 361
>CHL00181 cbbX CbbX; Provisional
Probab=86.07 E-value=2.2 Score=21.73 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCCC----HH-HHHHHHHHHHCCCCC-CEEEEECCCCCCCHH
Q ss_conf 18999613110010----01-235788875214334-225631111222001
Q gi|254780601|r 150 KAVVLDEADEMLDL----GF-RDDIEFILDSSPKKR-RMLMFSATISPAITT 195 (573)
Q Consensus 150 ~~lVlDEaD~ml~~----gf-~~~i~~i~~~~p~~~-q~~l~SAT~~~~i~~ 195 (573)
..|.+|||=.|..- .| .+.|+.|++.+-..+ ..++.=|-++.++..
T Consensus 124 GVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~eM~~ 175 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred CEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 8799824465357889998379999999999870799889998467899999
No 362
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=86.02 E-value=1.8 Score=22.42 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=65.9
Q ss_pred HHHHHHH--CC--CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 9999997--59--9699992898746899999999986104212255688279998499899999999999985446987
Q gi|254780601|r 29 AILNPDL--RE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV 104 (573)
Q Consensus 29 ~~ip~~l--~g--~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~ 104 (573)
..+|.++ +| .|.++.||.=||||. +| |.||.++.+=+.++. ..+++
T Consensus 111 ~~~~yL~d~~~~~~NTLiIsPPq~GKTT-----lL------------------------RDlaR~~StG~~~~~-~~g~K 160 (282)
T TIGR02858 111 KILPYLVDRNGRVLNTLIISPPQCGKTT-----LL------------------------RDLARILSTGISKLG-LKGKK 160 (282)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCCC-----HH------------------------HHHHHHHHCCCCCCC-CCCCC
T ss_conf 6688773058944678888688988510-----48------------------------889888607854246-89974
Q ss_pred EEE---------EECCCCHHHHHHHHCCCCEEEEECCC--CHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 999---------98899879999961289759982231--0133210001224643189996131100100123578887
Q gi|254780601|r 105 VAV---------CIGGVSVHRERRDLQNGAHIVVGTPG--RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173 (573)
Q Consensus 105 v~~---------~~gg~~~~~q~~~l~~~~~iiv~TPg--rl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~ 173 (573)
|.. ||-|.| |.+ +=-..||+=+-|- =++=++. ==.=+.+|.||- |=.+|++.|+
T Consensus 161 VgivDERSEIAgC~~GvP---Q~~-vG~RtDVLD~CPKAEGmMM~iR-----SMSP~Viv~DEI------Gr~ED~~Al~ 225 (282)
T TIGR02858 161 VGIVDERSEIAGCVNGVP---QLD-VGIRTDVLDGCPKAEGMMMLIR-----SMSPDVIVVDEI------GREEDVEALL 225 (282)
T ss_pred EEEEECCHHHHHHCCCCC---CCC-CCCCEEECCCCCHHHHHHHHHH-----CCCCCEEEEECC------CCHHHHHHHH
T ss_conf 699843246565458824---144-6760675178853789999997-----069857998148------8953389999
Q ss_pred HHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 5214334225631111222001111
Q gi|254780601|r 174 DSSPKKRRMLMFSATISPAITTLAK 198 (573)
Q Consensus 174 ~~~p~~~q~~l~SAT~~~~i~~l~~ 198 (573)
+.++... .++.||= ...+.+|.+
T Consensus 226 eA~naGV-~~I~TaH-g~~~~Dl~k 248 (282)
T TIGR02858 226 EALNAGV-SVIATAH-GRDLEDLKK 248 (282)
T ss_pred HHHCCCC-EEEEEEC-CCCHHHHHC
T ss_conf 9861675-6887640-488126650
No 363
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=85.88 E-value=0.89 Score=24.40 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCEE--EECCCCCCHHHH
Q ss_conf 9999997599699--992898746899
Q gi|254780601|r 29 AILNPDLREKDVL--VSAQTGSGKTVA 53 (573)
Q Consensus 29 ~~ip~~l~g~d~i--~~a~TGsGKT~a 53 (573)
-.+..+++|.+.. +-.|||||||..
T Consensus 70 plv~~~~~G~n~ti~aYGqTGSGKTyT 96 (335)
T smart00129 70 PLVDSVLEGYNATIFAYGQTGSGKTYT 96 (335)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCE
T ss_conf 999999789757999979999997647
No 364
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=85.84 E-value=2.6 Score=21.31 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 5641677513-0233456555554226663010489999999999866544
Q gi|254780601|r 243 GAKNAIVFCS-TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 (573)
Q Consensus 243 ~~~~~ivF~~-t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~ 292 (573)
....++|||- --....-++.+|...|+.+..|-|+-. .-|..+++.|.+
T Consensus 73 ~~~~~~iyCwRGG~RS~s~~~~L~~~G~~v~~l~GGYK-ayR~~v~~~l~~ 122 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYK-AYRRFVIDQLEE 122 (311)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHH
T ss_conf 79977999747618789999999985998431578389-999999999971
No 365
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=85.83 E-value=2.6 Score=21.31 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 3564167751-30233456555554226663010489999999999866544
Q gi|254780601|r 242 HGAKNAIVFC-STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292 (573)
Q Consensus 242 ~~~~~~ivF~-~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~ 292 (573)
.+..+++||| +--....-++.+|...|+.+..|.|+-. .-|..+++.|.+
T Consensus 87 ~~~~~~~iyCwRGG~RS~~~~~~L~~~G~~v~~l~GGYK-ayR~~v~~~l~~ 137 (333)
T PRK11784 87 PRNPRPLLYCWRGGLRSGSVQQWLKEIGIDVPLLEGGYK-AYRRFVIDTLEE 137 (333)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHCC
T ss_conf 789976999736756689999999986997560376089-999999998546
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=85.82 E-value=2.6 Score=21.31 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=50.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-HHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 599699992898746899999999986104212255688279998499899-9999999999854469879999889987
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL-AVQVGRELEWLYAKTGVVVAVCIGGVSV 114 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL-a~Qv~~~~~~l~~~~~~~v~~~~gg~~~ 114 (573)
.|.=+++.|+||.||| +|++-+..++.... +-.+++++. |. ..++..-+ ++...++...-+..|..-
T Consensus 12 ~G~L~vi~a~~g~GKS-~~~~~la~~~a~~~-------g~~V~~~Sl--Em~~~~~~~R~--~s~~~~i~~~~i~~~~~~ 79 (242)
T cd00984 12 PGDLIIIAARPSMGKT-AFALNIAENIAKKQ-------GKPVLFFSL--EMSKEQLLQRL--LASESGISLSKLRTGSLS 79 (242)
T ss_pred CCCEEEEEECCCCCHH-HHHHHHHHHHHHHC-------CCCEEEEEC--CCCHHHHHHHH--HHHHHCCCHHHHHCCCCC
T ss_conf 9818999968999999-99999999999977-------995999933--35388999999--999829774553026522
Q ss_pred HHHHH-------HHCCCCEEEEECCCCHHHHHHCC---CCCCCCCEEEEEECCCCC
Q ss_conf 99999-------61289759982231013321000---122464318999613110
Q gi|254780601|r 115 HRERR-------DLQNGAHIVVGTPGRLCDHIRGK---GLNISHLKAVVLDEADEM 160 (573)
Q Consensus 115 ~~q~~-------~l~~~~~iiv~TPgrl~d~~~~~---~l~l~~v~~lVlDEaD~m 160 (573)
..+.. .+.+.+=.+..+|+.=++.|... ...-..++++|||=.+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~ 135 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLM 135 (242)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHC
T ss_conf 79999999999986169889966999999999999999988369989998269854
No 367
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=85.67 E-value=0.67 Score=25.23 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCCCCCCCCH
Q ss_conf 0235641677513023345655555422666-3010489999
Q gi|254780601|r 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQ 280 (573)
Q Consensus 240 ~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~q 280 (573)
.....+..++||.+-......+..|.+.||. +..|.|+|..
T Consensus 54 ~~~~d~~iv~~C~~G~rS~~aa~~L~~~G~~~V~~L~GGi~a 95 (101)
T cd01528 54 SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHH
T ss_conf 116898089983898159999999998599777984761998
No 368
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=85.65 E-value=0.72 Score=25.02 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=20.4
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 75996999928987468999999999861
Q gi|254780601|r 35 LREKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 35 l~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
+.|+-++...|.|||||+ .++.+-+.|-
T Consensus 63 ~aGrgiLi~GppgTGKTA-lA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTA-LAMGIARELG 90 (450)
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHHC
T ss_conf 666179997899976889-9999999858
No 369
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=85.56 E-value=0.73 Score=24.98 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=18.7
Q ss_pred HHHHHHHCCCCE--EEECCCCCCHHHH
Q ss_conf 999999759969--9992898746899
Q gi|254780601|r 29 AILNPDLREKDV--LVSAQTGSGKTVA 53 (573)
Q Consensus 29 ~~ip~~l~g~d~--i~~a~TGsGKT~a 53 (573)
..+..+++|.+. ++-.|||||||..
T Consensus 68 plv~~~l~G~n~ti~aYGqTGSGKTyT 94 (329)
T cd01366 68 PLVQSALDGYNVCIFAYGQTGSGKTYT 94 (329)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCEE
T ss_conf 999998677724899647899998547
No 370
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=85.41 E-value=0.78 Score=24.79 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=17.2
Q ss_pred HHHHHCCCCE--EEECCCCCCHHHHH
Q ss_conf 9999759969--99928987468999
Q gi|254780601|r 31 LNPDLREKDV--LVSAQTGSGKTVAF 54 (573)
Q Consensus 31 ip~~l~g~d~--i~~a~TGsGKT~af 54 (573)
+..+++|.+. ++-.|||||||...
T Consensus 77 v~~~l~G~n~ti~aYGqTGSGKTyTm 102 (322)
T cd01367 77 IPHVFEGGVATCFAYGQTGSGKTYTM 102 (322)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 99986898748999426888872684
No 371
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=85.24 E-value=1.9 Score=22.19 Aligned_cols=27 Identities=4% Similarity=-0.149 Sum_probs=16.6
Q ss_pred CEEEEECCCHHHHHH----HHHHHHHCCCCC
Q ss_conf 416775130233456----555554226663
Q gi|254780601|r 245 KNAIVFCSTRASVSR----FTKVLAEHLFQV 271 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~----l~~~L~~~g~~~ 271 (573)
...+||..|.+.++. +...|...|+.+
T Consensus 340 ~sl~v~~~s~~~l~~~~~~v~~~l~~~G~~~ 370 (800)
T PRK13898 340 LTILCSEKSIKALENALSLAEVELSNCGVYP 370 (800)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 9999987999999999999999998689579
No 372
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=85.20 E-value=2.8 Score=21.11 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=18.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
.|.-+.+..++|||||- ++-++..+.
T Consensus 46 ~Ge~vaIvG~sGsGKST--L~~ll~gl~ 71 (257)
T cd03288 46 PGQKVGICGRTGSGKSS--LSLAFFRMV 71 (257)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHCC
T ss_conf 99999999999981999--999996056
No 373
>PRK07004 replicative DNA helicase; Provisional
Probab=84.93 E-value=2.8 Score=21.03 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 024554200102--3564167751302334565555542--26663010-4899999999998665
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNALQMM 290 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~~~f 290 (573)
-|..+..++... .+..+.+.|++--...++++..|.. .+++...+ .|.++.++..++.+..
T Consensus 225 GKTafAlniA~n~A~~~g~~V~~FSLEMs~eql~~Rlls~~s~I~~~~ir~g~l~~~e~~~i~~a~ 290 (460)
T PRK07004 225 GKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAV 290 (460)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf 426999999999987258866998477999999999998606988211007889999999999999
No 374
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=84.85 E-value=1.8 Score=22.36 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
.|.-+.+..++|||||. ++-+|..+
T Consensus 29 ~Ge~v~ivG~sGsGKST--Ll~ll~gl 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSS--LLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHCC
T ss_conf 99899999999998999--99999679
No 375
>KOG3349 consensus
Probab=84.61 E-value=2.9 Score=20.94 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=5.9
Q ss_pred CHHHHHHHHHCCCC
Q ss_conf 88999999978798
Q gi|254780601|r 8 PQVIGEALSERGYV 21 (573)
Q Consensus 8 ~~~l~~~l~~~g~~ 21 (573)
+++.++.|.+.||+
T Consensus 24 ~~~~~~~L~k~G~~ 37 (170)
T KOG3349 24 SEEFLQELQKRGFT 37 (170)
T ss_pred CHHHHHHHHHCCCC
T ss_conf 89999999973963
No 376
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=84.45 E-value=3 Score=20.89 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHC-C---CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 9899999999975-9---969999289874689-9999999986104212255688279998499899999999999985
Q gi|254780601|r 24 TSVQEAILNPDLR-E---KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 24 t~iQ~~~ip~~l~-g---~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
.|=|...+..+++ | +=.+..++.|+||+. |+. +...|........ .| |- .+..+..+.
T Consensus 5 yPW~~~~w~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~--~A~~LlC~~~~~~---~~-----Cg-------~C~sC~~~~ 67 (328)
T PRK05707 5 YPWQQSLWQQLAGRGRHAHAYLLHGPAGIGKRALAER--LAAFLLCEAPQGG---GA-----CG-------SCKGCQLLA 67 (328)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH--HHHHHHCCCCCCC---CC-----CC-------CCHHHHHHH
T ss_conf 6674899999997798220464479998679999999--9999848999998---99-----98-------888999987
Q ss_pred HH--CCCEEEEEEC-CCCH-HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 44--6987999988-9987-999996128975998223101332100012246431899961311001001235788875
Q gi|254780601|r 99 AK--TGVVVAVCIG-GVSV-HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 99 ~~--~~~~v~~~~g-g~~~-~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
.. .++.+..--+ |.++ .+|++.|.+ .+.... ..+.-|.+|+|+||.|-. +.-+.+|+
T Consensus 68 ~~~HPD~~~i~pe~~~~~I~IdqIR~l~~--------------~~~~~~-~~g~~KV~iI~~Ae~m~~----~AaNALLK 128 (328)
T PRK05707 68 AGSHPDNFVLEPEEADKPIKVDQVRELVS--------------FVVQTA-QLGGRKVVLIEPAEAMNR----NAANALLK 128 (328)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHH--------------HHHHCC-CCCCCEEEEEEHHHHHCH----HHHHHHHH
T ss_conf 58999879984266677697999999999--------------983176-678957999502877389----99999999
Q ss_pred HC---CCCCCEEEEE
Q ss_conf 21---4334225631
Q gi|254780601|r 175 SS---PKKRRMLMFS 186 (573)
Q Consensus 175 ~~---p~~~q~~l~S 186 (573)
.+ |.+.-.+|.|
T Consensus 129 tLEEPp~~t~fiL~t 143 (328)
T PRK05707 129 SLEEPSGQTVLLLIS 143 (328)
T ss_pred HHHCCCCCEEEEEEE
T ss_conf 850789875999860
No 377
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=84.41 E-value=1.5 Score=22.81 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=34.9
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHH
Q ss_conf 4643189996131100100123578887521433-42256311112220011112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~-~q~~l~SAT~~~~i~~l~~~ 199 (573)
+.+-+.++|||.---||..-...+..+++.+.++ --+++++.---.++..++.+
T Consensus 136 ~~~P~lLiLDEPTsgLD~~~~~~i~~li~~L~~e~g~til~vtHDl~~~~~~aDr 190 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDE 190 (251)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE
T ss_conf 7499989980986468999999999999999983298999990689999986999
No 378
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=84.31 E-value=3 Score=20.85 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECC
Q ss_conf 643189996131100100123578887521--433422563111
Q gi|254780601|r 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSAT 188 (573)
Q Consensus 147 ~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT 188 (573)
..-+.+||||||.|=.-.| +.+|+.+ |.. .++++=||
T Consensus 118 ~~yKV~IIDeah~Lt~~A~----NALLKtLEEPP~-~viFILaT 156 (563)
T PRK06674 118 VEYKVYIIDEVHMLSIGAF----NALLKTLEEPPG-HVIFILAT 156 (563)
T ss_pred CCEEEEEEECHHHCCHHHH----HHHHHHHHCCCC-CEEEEEEC
T ss_conf 8737999854563799999----999998638875-64999965
No 379
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.17 E-value=2.6 Score=21.24 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=27.5
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CEEEE
Q ss_conf 46431899961311001001235788875214334-22563
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLMF 185 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~-q~~l~ 185 (573)
..+-+.+|+||.--.||..-..++-.+++.+.++. .|+++
T Consensus 160 a~~P~iLllDEPTs~LD~~~~~~i~~~l~~l~~e~g~TvI~ 200 (283)
T PRK13640 160 AVEPQIIILDESTSMLDPAGKEQILKLIRKLMKDNNLTIIS 200 (283)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 71999999768745489899999999999999706989999
No 380
>KOG1384 consensus
Probab=84.09 E-value=0.62 Score=25.45 Aligned_cols=137 Identities=19% Similarity=0.246 Sum_probs=61.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCC---CCCC----------------CCCCCE--EEEECCCHHHHHHHHHHHHH
Q ss_conf 96999928987468999999999861042---1225----------------568827--99984998999999999999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFS----------------PASAPL--ALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~---~~~~----------------~~~~~~--~lil~PTrELa~Qv~~~~~~ 96 (573)
+=+++...|||||.- -++-+..++..+. .+++ ...-|. -=++-|.-|+..+.++....
T Consensus 8 KVvvI~G~TGsGKSr-LaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a~ 86 (348)
T KOG1384 8 KVVVIMGATGAGKSR-LAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDAS 86 (348)
T ss_pred EEEEEECCCCCCHHH-HHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCCCCHHHHCCHHHHHHHHH
T ss_conf 599995577777046-6788897578646515633563276620166875540798767707688676426999999999
Q ss_pred H-HHH--CCCEEEEEECCCCHHHHHHHHCC----CCEEEEECCCCHHHHHHCCCCCC-CCCEEEEEEC-----CCCCCCC
Q ss_conf 8-544--69879999889987999996128----97599822310133210001224-6431899961-----3110010
Q gi|254780601|r 97 L-YAK--TGVVVAVCIGGVSVHRERRDLQN----GAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDE-----ADEMLDL 163 (573)
Q Consensus 97 l-~~~--~~~~v~~~~gg~~~~~q~~~l~~----~~~iiv~TPgrl~d~~~~~~l~l-~~v~~lVlDE-----aD~ml~~ 163 (573)
. ... ..-++-.++||.+.--|.- +.+ ..|-..++-|++..-+.-..+.| -.+.-.||+| +|.|++.
T Consensus 87 ~aie~I~~rgk~PIv~GGs~~yi~al-~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml~~ 165 (348)
T KOG1384 87 RAIEEIHSRGKLPIVVGGSNSYLQAL-LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDMLES 165 (348)
T ss_pred HHHHHHHHCCCCCEEECCCHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 99999985799777967840668999-60687745585435678887556665079997266677788898889999973
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 0123578887521
Q gi|254780601|r 164 GFRDDIEFILDSS 176 (573)
Q Consensus 164 gf~~~i~~i~~~~ 176 (573)
|..|++..++...
T Consensus 166 Gl~eE~~~f~~~~ 178 (348)
T KOG1384 166 GLLEELRDFYDPY 178 (348)
T ss_pred CHHHHHHHHHHHH
T ss_conf 3099999985554
No 381
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=84.02 E-value=0.76 Score=24.86 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=34.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 356416775130233456555554226663010489999
Q gi|254780601|r 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280 (573)
Q Consensus 242 ~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q 280 (573)
.+....++||++-......+..|.+.||++..|.|+|..
T Consensus 49 ~k~~~ivv~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~~ 87 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKT 87 (90)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf 158709998899805999999999869988996698887
No 382
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=84.00 E-value=3.1 Score=20.77 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCCEEEEECC------------CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC---CEEEEEECCCCCCC
Q ss_conf 5641677513------------02334565555542266630104899999999998665448---81499853865001
Q gi|254780601|r 243 GAKNAIVFCS------------TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG---RARVCIATDVAARG 307 (573)
Q Consensus 243 ~~~~~ivF~~------------t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g---~~~vLV~TDvaaRG 307 (573)
+...++||.| +..+++.|...|...||.+ .++-+++..+=..++++|... ..+.+|+. ++|.|
T Consensus 8 ~rG~~lIinn~~F~~~~~~R~Gs~~D~~~L~~~f~~Lgf~V-~~~~nlt~~em~~~l~~~~~~~~~~~d~~vv~-imSHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE-EEEECCCHHHHHHHHHHHHHHHCCCCCEEEEE-EECCC
T ss_conf 64599998662368999999973999999999999889989-99608999999999999976342678779999-96578
Q ss_pred C
Q ss_conf 4
Q gi|254780601|r 308 I 308 (573)
Q Consensus 308 i 308 (573)
-
T Consensus 86 ~ 86 (243)
T cd00032 86 E 86 (243)
T ss_pred C
T ss_conf 8
No 383
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=83.92 E-value=0.93 Score=24.28 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHHCCCCE--EEECCCCCCHHHHH
Q ss_conf 9999759969--99928987468999
Q gi|254780601|r 31 LNPDLREKDV--LVSAQTGSGKTVAF 54 (573)
Q Consensus 31 ip~~l~g~d~--i~~a~TGsGKT~af 54 (573)
+..+++|.+. ++-.|||||||...
T Consensus 80 v~~~l~G~n~ti~aYGqTGSGKTyTm 105 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 99985887558999489999989785
No 384
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=83.84 E-value=3.1 Score=20.72 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=47.4
Q ss_pred CCEEEEECC-----------CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC----CEEEEEECCCCCCCC
Q ss_conf 641677513-----------02334565555542266630104899999999998665448----814998538650014
Q gi|254780601|r 244 AKNAIVFCS-----------TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG----RARVCIATDVAARGI 308 (573)
Q Consensus 244 ~~~~ivF~~-----------t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g----~~~vLV~TDvaaRGi 308 (573)
...++||.| +..+++.|...|...||.+ .+|-+++..+=..++++|... ..+.+|+. +++.|.
T Consensus 8 rG~alIInn~~F~~~~~R~Gs~~D~~~L~~~f~~LgF~V-~~~~nlt~~e~~~~l~~~~~~~~~~~~d~~vv~-ilsHG~ 85 (241)
T smart00115 8 RGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHGE 85 (241)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE-EEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEE-EECCCC
T ss_conf 439999835367999879983899999999999789989-992389999999999999854024787669999-964478
No 385
>pfam00225 Kinesin Kinesin motor domain.
Probab=83.70 E-value=1.1 Score=23.84 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=17.9
Q ss_pred HHHHHHCCCCEE--EECCCCCCHHHHH
Q ss_conf 999997599699--9928987468999
Q gi|254780601|r 30 ILNPDLREKDVL--VSAQTGSGKTVAF 54 (573)
Q Consensus 30 ~ip~~l~g~d~i--~~a~TGsGKT~af 54 (573)
.+..+++|.+.. +-.+||||||...
T Consensus 65 lv~~~l~G~n~ti~aYGqTGSGKTyTm 91 (321)
T pfam00225 65 LVESVLEGYNVTIFAYGQTGSGKTYTM 91 (321)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 999996887379999799999841652
No 386
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=83.60 E-value=3.2 Score=20.66 Aligned_cols=156 Identities=26% Similarity=0.300 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 98899999997879-87898999999999759969999289874689999999998610421225568827999849989
Q gi|254780601|r 7 IPQVIGEALSERGY-VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 7 l~~~l~~~l~~~g~-~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
++++|.+-|-..+| ..+-..+. .-| .-|+-..==|||||.+-+ =+-.+|+.... .+.| -||=|=|+=
T Consensus 77 V~eEL~~~LG~~~~E~~~L~~~~-~~P-----~vilmvGLQGsGKTTt~g-KLA~~ll~kk~----~~kv-LLva~D~yR 144 (439)
T TIGR00959 77 VHEELVAILGGKGRESAELKLAE-KRP-----TVILMVGLQGSGKTTTAG-KLALYLLKKKE----GKKV-LLVACDLYR 144 (439)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC-CCC-----EEEEEECCCCCCHHHHHH-HHHHHHHHHHC----CCCE-EEEEHHCCC
T ss_conf 46899985166673256755567-868-----389973137885788999-99999999863----8970-340321034
Q ss_pred HHHHHHHHHHHHHHHCCCEEEE-EECCCC----HHHHHHHHC----CCCEEE-EECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 9999999999985446987999-988998----799999612----897599-822310133210001224643189996
Q gi|254780601|r 86 LAVQVGRELEWLYAKTGVVVAV-CIGGVS----VHRERRDLQ----NGAHIV-VGTPGRLCDHIRGKGLNISHLKAVVLD 155 (573)
Q Consensus 86 La~Qv~~~~~~l~~~~~~~v~~-~~gg~~----~~~q~~~l~----~~~~ii-v~TPgrl~d~~~~~~l~l~~v~~lVlD 155 (573)
.|- .++|..|+...|+-|.. ...|.+ .+-=.++|+ ++.|+| |=|-|||- +|
T Consensus 145 PAA--~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~-----------------ID 205 (439)
T TIGR00959 145 PAA--IEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQ-----------------ID 205 (439)
T ss_pred HHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-----------------HH
T ss_conf 789--99999976752887110047888988778999999999997489789972675125-----------------55
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 131100100123578887521433422563111122200111121
Q gi|254780601|r 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200 (573)
Q Consensus 156 EaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~ 200 (573)
|. .-+++..|=+.++++=-.+..=|=+-+++.+.|+.|
T Consensus 206 ~~-------LM~EL~~iK~~~nP~EiLlVvDaM~GQdAvn~A~~F 243 (439)
T TIGR00959 206 EE-------LMEELAEIKEILNPDEILLVVDAMTGQDAVNTAKTF 243 (439)
T ss_pred HH-------HHHHHHHHHHHHCCCEEEECCHHCCHHHHHHHHHHH
T ss_conf 99-------999999998886887054122010216999999863
No 387
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=83.41 E-value=3.3 Score=20.61 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=31.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEE--E-CCCCHHHHHHHHCCCCE-EEEECC----CCHHHH--HHCCCCC
Q ss_conf 799984998999999999999854469879999--8-89987999996128975-998223----101332--1000122
Q gi|254780601|r 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--I-GGVSVHRERRDLQNGAH-IVVGTP----GRLCDH--IRGKGLN 145 (573)
Q Consensus 76 ~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~--~-gg~~~~~q~~~l~~~~~-iiv~TP----grl~d~--~~~~~l~ 145 (573)
.+++..||-.. |... +...|..+..+ . +..+.+.-...+...+. |++++| |.+++- +.+ .+.
T Consensus 107 ~vvi~~P~f~~----Y~~~---a~~~g~~~~~vpl~d~~~dl~~~~~~i~~~tklv~l~nPnNPTG~~~~~~~l~~-l~~ 178 (359)
T PRK03158 107 NTVMANPTFSQ----YRHN---AVIEGAEVREVPLKDGIHDLDAMLEAIDENTKIVWICNPNNPTGTYVEKQKLLA-FLE 178 (359)
T ss_pred EEECCCCEEEH----HHHH---HHHCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHH-HHH
T ss_conf 11137982055----5999---976285379962677766999999750758878997489999888765234899-997
Q ss_pred -CCCCEEEEEECC
Q ss_conf -464318999613
Q gi|254780601|r 146 -ISHLKAVVLDEA 157 (573)
Q Consensus 146 -l~~v~~lVlDEa 157 (573)
+.+=.++|+|||
T Consensus 179 ~~~~~~~vvvDEa 191 (359)
T PRK03158 179 KVPKSVLVVLDEA 191 (359)
T ss_pred HCCCCEEEEEEHH
T ss_conf 4857729997227
No 388
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=83.07 E-value=1.1 Score=23.74 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=20.4
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 75996999928987468999999999861
Q gi|254780601|r 35 LREKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 35 l~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
+.|+-++...|.|||||+ -++.+-+-|-
T Consensus 48 ~aGraiLlaGppGTGKTA-lA~aiakeLG 75 (395)
T pfam06068 48 IAGRAVLIAGPPGTGKTA-LAIAISKELG 75 (395)
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHHC
T ss_conf 577389987799988899-9999999748
No 389
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.03 E-value=3.4 Score=20.51 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CEEE
Q ss_conf 431899961311001001235788875214334-2256
Q gi|254780601|r 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLM 184 (573)
Q Consensus 148 ~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~-q~~l 184 (573)
+-+++|+||.=-+||..=..++-.++..++... .|++
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii 193 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTII 193 (235)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89899974998898978999999999998860797699
No 390
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=83.02 E-value=2.8 Score=21.10 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 89999999997599699992898746899999999986104212255688279998499899999999999985446987
Q gi|254780601|r 25 SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV 104 (573)
Q Consensus 25 ~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~ 104 (573)
.|...+...+-.|.-|=...|||||||. +-.++.....+ | +++|.=-.|| +
T Consensus 9 ~v~~R~l~yL~~G~PvHl~GPaG~GKT~-----LA~hvA~~r~R------P-V~l~~Gd~eL-----------------~ 59 (265)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTT-----LAMHVARKRDR------P-VVLINGDAEL-----------------T 59 (265)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHH-----HHHHHHHHCCC------C-EEEEECCCCC-----------------C
T ss_conf 9999876632278866744788855689-----99999973689------6-8998658232-----------------6
Q ss_pred EEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCC------CCCCEEEEEECCCC
Q ss_conf 99998899879999961289759982231013321000122------46431899961311
Q gi|254780601|r 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN------ISHLKAVVLDEADE 159 (573)
Q Consensus 105 v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~------l~~v~~lVlDEaD~ 159 (573)
..=++|...=...++.+.+-+|=|+=- -|.+++.+.+ ..+=-+||.||.-+
T Consensus 60 ~~DLvG~~~g~~~~kv~DqfihnV~K~----~d~~~~~W~D~rLt~Av~eG~TLVYdEF~R 116 (265)
T TIGR02640 60 TSDLVGSYAGYTRKKVVDQFIHNVVKL----EDIVRQNWVDNRLTLAVREGFTLVYDEFTR 116 (265)
T ss_pred CCCCCCCCCCCEEEEEEECCEEEEECC----CCCCCCCCCCCHHHHHHHCCCEEEECCCCC
T ss_conf 544231546752222320121113425----122002667835789975697276647578
No 391
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.00 E-value=3.4 Score=20.50 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=55.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCEEEEECCCHHHHHHHH--HHHHHHHHHCCCEEEEEE
Q ss_conf 69999289874689999999998610421-------225568827999849989999999--999998544698799998
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAEND-------RFSPASAPLALAIAPTRELAVQVG--RELEWLYAKTGVVVAVCI 109 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~-------~~~~~~~~~~lil~PTrELa~Qv~--~~~~~l~~~~~~~v~~~~ 109 (573)
-.+...+.|+||+.+ ++-..+.+..... +.....+|-.+.+.||-...-... .+........ +....
T Consensus 28 AyLF~Gp~G~GK~~~-A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~i~P~~~~~g~~~~~~~~~~~~~~~--~~~~~- 103 (314)
T PRK07399 28 AYLFAGPEGVGRKLA-ALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKR--KSPPQ- 103 (314)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC--CCCCC-
T ss_conf 487789998329999-99999998578999976655875189997788605620034545577898765302--68777-
Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEEC
Q ss_conf 8998799999612897599822310133210001224643189996131100100123578887521--43342256311
Q gi|254780601|r 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSA 187 (573)
Q Consensus 110 gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SA 187 (573)
.. .+|++.+.+ .+....+ -+.-+++|+|+||.|-. +.-+.+|+.+ |.+.-.+|.|.
T Consensus 104 --I~-idqIR~l~~--------------~l~~~p~-~~~~kVvII~~ae~m~~----~AaNaLLKtLEEP~~~~fILit~ 161 (314)
T PRK07399 104 --IR-LEQIREIKR--------------FLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred --CC-HHHHHHHHH--------------HHCCCCC-CCCCEEEEECCHHHCCH----HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf --87-999999999--------------9731885-68847999889787199----99999998614787856999979
No 392
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=83.00 E-value=1.5 Score=22.93 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.3
Q ss_pred CCCCEEEECCCCCCHHH
Q ss_conf 59969999289874689
Q gi|254780601|r 36 REKDVLVSAQTGSGKTV 52 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~ 52 (573)
.|.-+.+..++|||||.
T Consensus 30 ~Ge~~~IvG~sGsGKST 46 (204)
T cd03250 30 KGELVAIVGPVGSGKSS 46 (204)
T ss_pred CCCEEEEECCCCCCHHH
T ss_conf 99899999999985899
No 393
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=82.98 E-value=1.2 Score=23.50 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=36.1
Q ss_pred HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCCCCCCCCC
Q ss_conf 542001023564167751302334565555542266-6301048999
Q gi|254780601|r 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF-QVVALSGELS 279 (573)
Q Consensus 234 ~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~ 279 (573)
.+.+..+..+.+..+|||++-..+...+..|.+.|| ++..|.|+|.
T Consensus 51 ~~~~~~~~~k~k~ivvyC~~G~RS~~Aa~~L~~~Gf~~V~~L~GGi~ 97 (101)
T cd01518 51 WLDENLDLLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 99872121438769998599827999999999849870689663589
No 394
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=82.86 E-value=1.6 Score=22.75 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=16.0
Q ss_pred CEEEEECCCHHHHHH----HHHHHHHCCCCC
Q ss_conf 416775130233456----555554226663
Q gi|254780601|r 245 KNAIVFCSTRASVSR----FTKVLAEHLFQV 271 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~----l~~~L~~~g~~~ 271 (573)
...+||.+|.+.+++ +...|...|+.+
T Consensus 321 ~sv~V~~~~~~~l~~~~~~v~~~l~~~G~~~ 351 (789)
T PRK13853 321 LSLCVYADDLNSLADRGARARTRLADAGAVV 351 (789)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 8999982999999999999999997489579
No 395
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=82.78 E-value=2.1 Score=21.97 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=7.7
Q ss_pred HHHHCCCCCCCCCCEEEEE
Q ss_conf 9860301037888602564
Q gi|254780601|r 329 LHRSGRTGRAGRKGMSVFV 347 (573)
Q Consensus 329 vHR~GRtgRag~~G~ai~l 347 (573)
.||+.+.-..-..+..+.+
T Consensus 742 f~Ri~~~~dg~~r~~~~~~ 760 (931)
T TIGR00929 742 FHRIEEALDGSNRRFLIVI 760 (931)
T ss_pred HHHHHHHHCCCCCCEEEEE
T ss_conf 9999997241358679985
No 396
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=82.64 E-value=3.5 Score=20.41 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6301048999999999986654488149985
Q gi|254780601|r 270 QVVALSGELSQQERSNALQMMRDGRARVCIA 300 (573)
Q Consensus 270 ~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~ 300 (573)
.+..=|..|+.+|+..+=.=-+++.+.|+|-
T Consensus 407 aas~~~~rLs~EQ~~Av~hvt~s~~iavVvG 437 (888)
T TIGR02768 407 AASDQHERLSEEQKEAVRHVTGSGDIAVVVG 437 (888)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 1167877745899999875328996489974
No 397
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.53 E-value=1.4 Score=23.19 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999289874689999999998610
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLA 64 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~ 64 (573)
|++..||||||+... -.+++.++.
T Consensus 128 ILVTGpTGSGKSTTl-AamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTTL-AAMIDYINK 151 (353)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHC
T ss_conf 998679999678799-999999841
No 398
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=82.46 E-value=3.5 Score=20.37 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=5.0
Q ss_pred EEECHHHCCC
Q ss_conf 9967022798
Q gi|254780601|r 470 SLSVGSKQKA 479 (573)
Q Consensus 470 ~InvGr~d~v 479 (573)
.++.|-+|++
T Consensus 471 ~LSGGQrQRi 480 (585)
T PRK13657 471 QLSGGERQRL 480 (585)
T ss_pred CCCHHHHHHH
T ss_conf 6899999999
No 399
>pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Probab=82.44 E-value=3.3 Score=20.58 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 87987898999999999759969999289874689
Q gi|254780601|r 18 RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 18 ~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~ 52 (573)
.||.+-- ....|| .-.|-. ++..|-||||+=
T Consensus 8 ~gFKSy~--~~~~i~-f~~gft-~IVGpNGSGKSN 38 (1162)
T pfam02463 8 EGFKSYA--KTVILP-FSPGFT-AIVGPNGSGKSN 38 (1162)
T ss_pred ECCCCCC--CCEECC-CCCCEE-EEECCCCCCHHH
T ss_conf 0830899--996458-999917-888999987788
No 400
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=82.36 E-value=1.1 Score=23.69 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=32.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5641677513023345655555422666301048999
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~ 279 (573)
+.+..+|+|.+-......+..|...||.+..|.|+|.
T Consensus 60 ~d~~ivv~C~~G~rS~~aa~~L~~~G~~v~~L~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9983999928965699999999987983798366278
No 401
>PRK13909 putative recombination protein RecB; Provisional
Probab=82.35 E-value=3.6 Score=20.34 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=30.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 999928987468999999999861042122556882799984998999999999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~ 93 (573)
+++.|.-|||||..-.-=++..|... . .--+.|+++=|+--|...-+-
T Consensus 1 l~i~AsAGSGKT~~L~~R~l~Ll~~g-~-----~p~~ILavTFT~kAA~EMk~R 48 (911)
T PRK13909 1 LALKASAGSGKTFALSVRFLALLFKG-A-----NPNEILALTFTKKAANEMKER 48 (911)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCCC-C-----CCCCEEEECHHHHHHHHHHHH
T ss_conf 97997670449999999999997389-7-----924487855688999999999
No 402
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=82.35 E-value=1.4 Score=23.01 Aligned_cols=125 Identities=21% Similarity=0.266 Sum_probs=67.6
Q ss_pred HHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999759---96999928987468999999999861042122556882799984998999999999999854469879
Q gi|254780601|r 29 AILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105 (573)
Q Consensus 29 ~~ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v 105 (573)
+|+...|+| ++||+=.|.|-|||+|==|-+=+-. ....+...++| ++.-+-.
T Consensus 75 ~ALKAALCGPNPQHVIiYGPPGVGKTAAARLVLeeAK----k~~~SPFke~A---------------------~FVEiDA 129 (532)
T TIGR02902 75 KALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK----KNPASPFKEEA---------------------AFVEIDA 129 (532)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH----CCCCCCCCCCC---------------------EEEEEEC
T ss_conf 9999860686896389878869617899999999865----08753789886---------------------6898505
Q ss_pred EEEECCCCHHHHHHHHCCC-CEEEEECCCCHHHHHHC---------------CCCCCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf 9998899879999961289-75998223101332100---------------0122464318999613110010012357
Q gi|254780601|r 106 AVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCDHIRG---------------KGLNISHLKAVVLDEADEMLDLGFRDDI 169 (573)
Q Consensus 106 ~~~~gg~~~~~q~~~l~~~-~~iiv~TPgrl~d~~~~---------------~~l~l~~v~~lVlDEaD~ml~~gf~~~i 169 (573)
+|+ -++ ++| +|=|||. +-|=+-+ |.+.=.|=-.|=|||-=||= ==.|
T Consensus 130 TT~----RFD------ERGIADPLIGS---VHDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELH----P~~M 192 (532)
T TIGR02902 130 TTA----RFD------ERGIADPLIGS---VHDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELH----PVQM 192 (532)
T ss_pred CCC----CCC------CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC----HHHH
T ss_conf 103----602------14666656776---158533376545788557587776320258655121246658----2435
Q ss_pred HHHHHHCCCCCCEEEEECCC-------CCCCHHH
Q ss_conf 88875214334225631111-------2220011
Q gi|254780601|r 170 EFILDSSPKKRRMLMFSATI-------SPAITTL 196 (573)
Q Consensus 170 ~~i~~~~p~~~q~~l~SAT~-------~~~i~~l 196 (573)
+.+||-| ++|...|=||=+ |..|+++
T Consensus 193 NKLLKVL-EDRKVFLdSAYY~s~~pniP~hI~dI 225 (532)
T TIGR02902 193 NKLLKVL-EDRKVFLDSAYYSSEDPNIPSHIRDI 225 (532)
T ss_pred HHHHHHH-HCCCCHHHCCCCCCCCCCCCHHHHHH
T ss_conf 3141133-02220000123587778654278997
No 403
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=82.19 E-value=0.73 Score=24.99 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=42.8
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 88999999978798789899999999975996999928987468999999999861042122556882799984998999
Q gi|254780601|r 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 8 ~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
+..+.+-|++.|--.+-.|-..-++.--+-+++++..-||||||.++ --+|..+.. ++-+|+|.=|+-|..
T Consensus 156 ~k~vak~Lkk~~~aS~i~i~glpl~k~sE~qH~li~GTtGtGKS~~i-r~LL~qIR~--------RGdrAIIyD~~G~Fv 226 (732)
T PRK13700 156 PKDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ--------RGDMVVIYDRSGEFV 226 (732)
T ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCCHHHEEEEECCCCCCHHHHH-HHHHHHHHH--------CCCCEEEECCCCCCH
T ss_conf 99999999863877882467866676520312677468888899999-999999997--------299589993998533
Q ss_pred HH
Q ss_conf 99
Q gi|254780601|r 88 VQ 89 (573)
Q Consensus 88 ~Q 89 (573)
..
T Consensus 227 ~~ 228 (732)
T PRK13700 227 KS 228 (732)
T ss_pred HH
T ss_conf 97
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.04 E-value=3.7 Score=20.27 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 4643189996131100100123578887521433422563
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~ 185 (573)
+.+-+.+++||+---||..-...+..++..+.+++ |+++
T Consensus 112 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-Tvi~ 150 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKGK-TVIV 150 (171)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-EEEE
T ss_conf 74899899957766799899999999999980999-8999
No 405
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=81.86 E-value=0.75 Score=24.92 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 464318999613110010012357888752143342256311
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SA 187 (573)
..+-+.|+|||----||.....++-.+++.+.+.-.+++++-
T Consensus 154 aq~P~ILLLDEPTs~LDi~~q~ell~lLr~L~~~G~TVI~vt 195 (409)
T PRK09536 154 AQATPVLLLDEPTASLDINHQIRTLELVRDLADDGKTVVAAI 195 (409)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 679998999587667999999999999999985899999995
No 406
>KOG1556 consensus
Probab=81.79 E-value=2.7 Score=21.15 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=87.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 27999849989999999999998544698799998899879999961289759982231013321000122464318999
Q gi|254780601|r 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154 (573)
Q Consensus 75 ~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVl 154 (573)
++-+|+.|---| -+.+.++..++..+-||+-+ +.|. .+.++++..+--.+.+
T Consensus 8 ~~kViVhPLVLL--S~VDhynR~~k~~~KRvvGv-------------------LLG~-------~~~~~i~vtnSfAvpF 59 (309)
T KOG1556 8 VEKVIVHPLVLL--SAVDHYNRVGKDTNKRVVGV-------------------LLGS-------WNGDVIDVTNSFAVPF 59 (309)
T ss_pred CCEEEEEHHHHH--HHHHHHHHHCCCCCCEEEEE-------------------EEEC-------CCCCEEEEECCEECCC
T ss_conf 001565024788--88777765145767348999-------------------9743-------8898277204310454
Q ss_pred ECCCC-----CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC------CCHHHHHHHCCCCCCC--CCCCCCCCCCCCCH
Q ss_conf 61311-----00100123578887521433422563111122------2001111210123333--23332325665200
Q gi|254780601|r 155 DEADE-----MLDLGFRDDIEFILDSSPKKRRMLMFSATISP------AITTLAKNYQKDAVRV--NIASENRQHSDIDY 221 (573)
Q Consensus 155 DEaD~-----ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~------~i~~l~~~~~~~p~~i--~~~~~~~~~~~i~~ 221 (573)
||-|+ .||+.|.+.+...++.++..-..+-+--|=|+ +|.++.++|..||+.+ .+.......|+ .
T Consensus 60 eEDdk~~svWFlDh~Y~esM~~mfkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIIdvkpk~~gLPT--~ 137 (309)
T KOG1556 60 EEDDKDKSVWFLDHNYIESMFGMFKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIIDVKPKELGLPT--E 137 (309)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCHHHEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--H
T ss_conf 45677881488423799999999998441000566641587445021569999862489866999963544589973--0
Q ss_pred HCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 0000000002455420010235641677513023345655
Q gi|254780601|r 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261 (573)
Q Consensus 222 ~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~ 261 (573)
-|+.|.+-. . +..++.++.+.+.+--.+++.-
T Consensus 138 AY~aVeev~-d-------Dgt~t~ktF~Hvps~I~AeEAE 169 (309)
T KOG1556 138 AYIAVEEVK-D-------DGTPTSKTFVHVPSEIEAEEAE 169 (309)
T ss_pred HEEEEEEEE-C-------CCCCCCCEEEECCCCCCHHHHH
T ss_conf 013445521-3-------7998612167447531356787
No 407
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=81.67 E-value=1 Score=24.05 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 122464318999613110010012--357888752143342256311112220011112
Q gi|254780601|r 143 GLNISHLKAVVLDEADEMLDLGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 143 ~l~l~~v~~lVlDEaD~ml~~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
.+.-.....+||||.--.++.|+. +++-.+++.-|+..-.+|..-..|+++.++|..
T Consensus 91 ~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~evVlTGr~~p~~L~e~AD~ 149 (172)
T pfam02572 91 ALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQHVVLTGRGAPPELIELADL 149 (172)
T ss_pred HHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 97588989997355799975599689999999982899877999899999999997047
No 408
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=81.55 E-value=3.8 Score=20.15 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHCCC---EEEEEEC--CCCCCCCCCCC--CCEEEEECCCC
Q ss_conf 99999999986654488---1499853--86500145788--73389705887
Q gi|254780601|r 278 LSQQERSNALQMMRDGR---ARVCIAT--DVAARGIDLPD--LELVIHAELSS 323 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~---~~vLV~T--DvaaRGiDi~~--v~~Vin~d~P~ 323 (573)
++..++..+|++|+... -.+|+|+ --.|.|||+++ +..||-..+|.
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~ 80 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCC
T ss_conf 98357999999999862369819999844157521505997765999970899
No 409
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=81.47 E-value=1.7 Score=22.49 Aligned_cols=27 Identities=11% Similarity=0.232 Sum_probs=16.9
Q ss_pred CEEEEECCCHHHHHHHH----HHHHHCCCCC
Q ss_conf 41677513023345655----5554226663
Q gi|254780601|r 245 KNAIVFCSTRASVSRFT----KVLAEHLFQV 271 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~l~----~~L~~~g~~~ 271 (573)
...+||.++.+.+++.+ ..|...||.+
T Consensus 346 ~tv~v~~~~~~~l~~~~~~v~~~l~~~Gf~~ 376 (818)
T PRK13830 346 PVIVLFDEDRERLQEKAEAIRRLIQAEGFGA 376 (818)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 8999967999999999999999997389468
No 410
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=81.42 E-value=0.94 Score=24.26 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=14.1
Q ss_pred CCEEEECCCCCCHHH
Q ss_conf 969999289874689
Q gi|254780601|r 38 KDVLVSAQTGSGKTV 52 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~ 52 (573)
+|++...|||+|||.
T Consensus 51 kNILmIGPTGvGKTe 65 (442)
T PRK05201 51 KNILMIGPTGVGKTE 65 (442)
T ss_pred CCEEEECCCCCCHHH
T ss_conf 316887888866789
No 411
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=81.41 E-value=1.1 Score=23.66 Aligned_cols=44 Identities=27% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9699992898746899999999986104212255688279998499899999999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGR 92 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~ 92 (573)
..+++.|||+|||...++||-|-.... -++|+=+-.|+..=.+.
T Consensus 140 eHvL~~APTRSGKGVGiVIPNLLsw~g-----------SvVVlDIKGEN~~lTAg 183 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKG-----------SVIALDVKGELFELTSR 183 (670)
T ss_pred CEEEEECCCCCCCCCEEEECCCCCCCC-----------CEEEEECCHHHHHHHHH
T ss_conf 669997789999862588577778899-----------88999476778999899
No 412
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=81.40 E-value=2.6 Score=21.29 Aligned_cols=104 Identities=23% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCC------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 289874689999999998610421------22556882799984998999999999999854469879999889987999
Q gi|254780601|r 44 AQTGSGKTVAFGLALASTLLAEND------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 44 a~TGsGKT~af~lp~l~~l~~~~~------~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+--|||||= +++-+++.+....- +....+.....+++....-+.++-+|---++...++.| ++|. +-.+-
T Consensus 60 tvGGTGKTP-~v~~La~~L~~~G~~~~IiSRGYg~~~~~~~~~v~~~~~~~~vGDEpllla~~~~~pV--~V~~-~R~~a 135 (332)
T PRK00313 60 TVGGTGKTP-LILWLIEHCRRRGLRVGVVSRGYGARPPQLPWRVTADQDAAEAGDEPLLIVQRTGVPL--MIDP-DRPRA 135 (332)
T ss_pred EECCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCCCHHHCCCHHHHHHHCCCCCE--EECC-CHHHH
T ss_conf 358877779-9999999999779965898646567666773554577684555858899985069629--9807-69999
Q ss_pred HHH-HC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 996-12-89759982231013321000122464318999613
Q gi|254780601|r 118 RRD-LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157 (573)
Q Consensus 118 ~~~-l~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEa 157 (573)
.+. ++ .++||||.-=| +....+ -.++..+|+|..
T Consensus 136 ~~~l~~~~~~dviIlDDG-----fQh~~l-~rDl~Ivvid~~ 171 (332)
T PRK00313 136 VQALLAAEPLDLILSDDG-----LQHYRL-ARDLELVLIDAA 171 (332)
T ss_pred HHHHHHCCCCCEEEECCC-----CCCHHH-CCCCEEEEECCC
T ss_conf 999996499988995585-----312010-488069984566
No 413
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=81.35 E-value=3.9 Score=20.11 Aligned_cols=48 Identities=27% Similarity=0.232 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
+++.+++|+|||.-. +-+....... +.. ++.+-+-|-..|+...+..+
T Consensus 2 ~li~g~~g~GKttl~-~~~~~~~~~~--------~~~-~~~~~~ee~~~q~~~~~~~~ 49 (165)
T cd01120 2 ILVFGPTGSGKTTLA-LQLALNIATK--------GGK-VVYVDIEEEIEELTERLIGE 49 (165)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHC--------CCE-EEEEECCCCHHHHHHHHHHH
T ss_conf 899989999899999-9999998763--------997-99998666448999999986
No 414
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880 Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=81.11 E-value=1.6 Score=22.76 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=33.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHCC-CCEEEEECCCCHHHH---HHCCCCCCC--CCEEEEE
Q ss_conf 69879999889987999996128-975998223101332---100012246--4318999
Q gi|254780601|r 101 TGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDH---IRGKGLNIS--HLKAVVL 154 (573)
Q Consensus 101 ~~~~v~~~~gg~~~~~q~~~l~~-~~~iiv~TPgrl~d~---~~~~~l~l~--~v~~lVl 154 (573)
+|..++++-||. -++|+.-++. .|+||.+||--++.+ ++|-.++-+ ++++-|+
T Consensus 144 LG~~~vPiSGG~-TekQ~qLI~Df~P~iI~~TPSY~L~~~e~l~r~~~dp~~~Sl~~gil 202 (431)
T TIGR02155 144 LGCTVVPISGGQ-TEKQVQLIQDFKPDIIMVTPSYMLNILEELKRMGIDPEQTSLKVGIL 202 (431)
T ss_pred CCCEEEECCCCC-HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCHHHCCEEEEEE
T ss_conf 660787137978-05677764337988898577899999998864068864563678872
No 415
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=81.04 E-value=4 Score=20.04 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC---------------------------CCC
Q ss_conf 87898999999999759969999289874689999999998610421225---------------------------568
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS---------------------------PAS 73 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~---------------------------~~~ 73 (573)
..+.|=|..|+. .+.| -++|.|.-|||||- -|+++|.-....++ ...
T Consensus 2 ~~LNp~Q~~AV~-Y~~G-PlLVLAGAGSGKT~----VI~~KIayLi~~cgY~a~~IaAvTFTNKAA~EMkERVA~~L~~~ 75 (677)
T TIGR01074 2 SKLNPQQQEAVE-YVGG-PLLVLAGAGSGKTR----VITNKIAYLIQNCGYKAKNIAAVTFTNKAAREMKERVAKTLGKG 75 (677)
T ss_pred CCCCHHHHHHHH-HHCC-CCEEECCCCCCCCH----HHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 888743799998-6158-71465177778635----78889999875158787616897352377799999998522654
Q ss_pred CCEEEEECCCHHHHHHH-HHHHHHHHHHCCCEE
Q ss_conf 82799984998999999-999999854469879
Q gi|254780601|r 74 APLALAIAPTRELAVQV-GRELEWLYAKTGVVV 105 (573)
Q Consensus 74 ~~~~lil~PTrELa~Qv-~~~~~~l~~~~~~~v 105 (573)
..+.|++|-=+-|-+.| -+|...++-..|+.+
T Consensus 76 ~~~GL~isTFH~LGL~Ii~~E~~~lG~K~nFSl 108 (677)
T TIGR01074 76 QAKGLTISTFHTLGLKIIRREHNALGLKSNFSL 108 (677)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 558544752057338999999986488999642
No 416
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.96 E-value=4 Score=20.02 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=18.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
.|.-+.+..++|||||- ++-+|..+.
T Consensus 26 ~Ge~v~ivG~sGsGKST--Ll~ll~gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKST--ILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHCCCC
T ss_conf 99999999999998999--999974385
No 417
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.78 E-value=4.1 Score=19.98 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 46431899961311001001235788875214334225631111222
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~ 192 (573)
..+-+.++|||.-.-||..-.+.+..+++.+-..-.++++|.--|..
T Consensus 142 ~~~p~vllLDEPtsgLD~~~~~~v~~~i~~~~~~g~tiIi~tH~p~~ 188 (206)
T PRK13539 142 VSNRPIWLLDEPTAALDSASQALFAELIRAHLAQGGIVIAATHIPLG 188 (206)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 86989899979977789999999999999999589999999389887
No 418
>PRK06921 hypothetical protein; Provisional
Probab=80.70 E-value=4.1 Score=19.96 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 9969999289874689-99999999861042122556882799984998999999
Q gi|254780601|r 37 EKDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV 90 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv 90 (573)
...++...++|+|||. |.+ |...|+... + ..++..|.+|+-..+
T Consensus 116 ~~~l~f~G~~G~GKThLa~a--Ia~~Ll~~~-------~-~~Vly~~~~~~~~~l 160 (265)
T PRK06921 116 KNSIALLGQPGSGKTHLLTA--AANELMRKK-------G-VPVLYFPFVEGFGDL 160 (265)
T ss_pred CCCEEEECCCCCCHHHHHHH--HHHHHHHHC-------C-CEEEEEEHHHHHHHH
T ss_conf 66279972898988999999--999999962-------9-719998879999999
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.63 E-value=4.1 Score=19.94 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 8999999999759-----96999928987468999999999861042122556882799984998999999999999854
Q gi|254780601|r 25 SVQEAILNPDLRE-----KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 25 ~iQ~~~ip~~l~g-----~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
|=|..++..+... +-.+...+.|.||+. |..-+...++....... ..| |- .+..+..+..
T Consensus 4 pW~~~~w~~l~~~~~rl~HA~L~~Gp~G~Gk~~-~A~~~A~~llC~~~~~~--~~~-----------Cg-~C~sC~~~~~ 68 (325)
T PRK08699 4 PWHQEQWRQIAEHWERRPNAWLFVGKKGTGKTA-FARFAAKALLCETPAPG--CKP-----------CG-ECMSCHLFGQ 68 (325)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHCCCCCCC--CCC-----------CC-CCHHHHHHHC
T ss_conf 745799999998344501179757999978999-99999999828999888--998-----------98-8888999865
Q ss_pred --HCCCEEEEEEC-----CC---CH-HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf --46987999988-----99---87-999996128975998223101332100012246431899961311001001235
Q gi|254780601|r 100 --KTGVVVAVCIG-----GV---SV-HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168 (573)
Q Consensus 100 --~~~~~v~~~~g-----g~---~~-~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~ 168 (573)
+.++....-.+ |. .+ .+|++.|. +-+.-|| ..+.-|.+|||+||.|-. ..
T Consensus 69 g~HPD~~~i~p~~~~~~~g~~~~~I~idqiR~l~---~~~~~~~------------~~~~~kV~ii~~ae~mn~----~a 129 (325)
T PRK08699 69 GSHPDFYEITPLADEPENGRKLLQIKIDAVREII---DNVYLTS------------VRGGLRVILIHPAESMNV----QA 129 (325)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH---HHHCCCC------------CCCCCEEEEECCHHHHCH----HH
T ss_conf 9999968851344530016655667699999999---9971086------------568946999857777589----99
Q ss_pred HHHHHHHC---CCCCCEEEEE
Q ss_conf 78887521---4334225631
Q gi|254780601|r 169 IEFILDSS---PKKRRMLMFS 186 (573)
Q Consensus 169 i~~i~~~~---p~~~q~~l~S 186 (573)
-+.+|+.+ |.+.-.+|.|
T Consensus 130 aNaLLK~LEEPp~~~~fiL~t 150 (325)
T PRK08699 130 ANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred HHHHHHHHCCCCCCEEEEEEE
T ss_conf 999999841788884899987
No 420
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=80.36 E-value=4.2 Score=19.89 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=17.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
.|.-+.+..++|||||. ++-+|..+
T Consensus 28 ~G~~iaIvG~sGsGKST--Ll~ll~gl 52 (238)
T cd03249 28 PGKTVALVGSSGCGKST--VVSLLERF 52 (238)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHC
T ss_conf 99999999999998999--99998238
No 421
>KOG1001 consensus
Probab=80.33 E-value=0.3 Score=27.56 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=31.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC-EEEEE-ECCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 1677513023345655555422666301048999999999986654488-14998-538650014578873389705887
Q gi|254780601|r 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR-ARVCI-ATDVAARGIDLPDLELVIHAELSS 323 (573)
Q Consensus 246 ~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~-~~vLV-~TDvaaRGiDi~~v~~Vin~d~P~ 323 (573)
+++||+.-....+-+...|...|+....+-|.|++.+|..++..|..+. ..||. +.-...-||++--..|||-.|+=.
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~dg~~~~~~r~~s~~~f~~~~~~~vll~SlKag~~glNlt~A~~v~~~dpww 620 (674)
T KOG1001 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHC
T ss_conf 62553368998888522344314440101125678899876531566763569999988500120224667888602221
Q ss_pred CH
Q ss_conf 47
Q gi|254780601|r 324 NP 325 (573)
Q Consensus 324 ~~ 325 (573)
++
T Consensus 621 np 622 (674)
T KOG1001 621 NP 622 (674)
T ss_pred CC
T ss_conf 82
No 422
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=80.29 E-value=0.44 Score=26.43 Aligned_cols=42 Identities=26% Similarity=0.098 Sum_probs=29.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 96999928987468999999999861042122556882799984998999999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV 90 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv 90 (573)
..+++.|||+|||...++||-|-.... -++|+=+-.|+..=.
T Consensus 145 eHvL~~APTRSGKGVG~VIPNLLsw~g-----------SvVVlDIKGEN~~lT 186 (662)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPG-----------SAIVHDIKGENWQLT 186 (662)
T ss_pred CEEEEECCCCCCCEEEEECCCCCCCCC-----------CEEEEECCHHHHHHH
T ss_conf 458997579998701586777257789-----------789994533457988
No 423
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=80.22 E-value=4.2 Score=19.86 Aligned_cols=217 Identities=19% Similarity=0.187 Sum_probs=95.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCC------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 289874689999999998610421------22556882799984998999999999999854469879999889987999
Q gi|254780601|r 44 AQTGSGKTVAFGLALASTLLAEND------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 44 a~TGsGKT~af~lp~l~~l~~~~~------~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+--|||||= +++-+++.+....- +....+.....++++...-+.++-+|-.-++...++.| ++|..-...-
T Consensus 58 tvGGtGKTP-~v~~la~~l~~~g~~~~IlSRGYg~~~~~~~~v~~~~~~~~~vGDEpllla~~~~~~v--~V~~~R~~~~ 134 (334)
T PRK00652 58 TVGGNGKTP-VVIWLAEQLQARGVKVGVVSRGYGGKSKGYPLVLPADTTAAEVGDEPVLIAQRTGAPV--AVSPDRVKAI 134 (334)
T ss_pred EECCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCHHHCCCHHHHHHHCCCCCE--EEECCHHHHH
T ss_conf 878877799-9999999999769936787346676567872761799983551868999851789839--9956689999
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC-----CCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 99612897599822310133210001224643189996131-----100100-123578887521433422563111122
Q gi|254780601|r 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD-----EMLDLG-FRDDIEFILDSSPKKRRMLMFSATISP 191 (573)
Q Consensus 118 ~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD-----~ml~~g-f~~~i~~i~~~~p~~~q~~l~SAT~~~ 191 (573)
...++.++|+||--=| +....+ -.++..+++|.-+ .||-.| .+|.+..+ + ....+++. ...
T Consensus 135 ~~l~~~~~dviIlDDG-----fQh~~l-~rdl~Ivlid~~~~fgn~~llP~GpLREp~~~l-~----rAD~ii~~--~~~ 201 (334)
T PRK00652 135 KALLALGADIIILDDG-----LQHYRL-HRDFEIVVVDGQRRFGNGWLLPAGPLREPPSRL-K----SADAVIVN--GGD 201 (334)
T ss_pred HHHHHCCCCEEEECCC-----CCCCCC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHH-C----CCCEEEEE--CCC
T ss_conf 9999659999997476-----656644-688799997477678898677586565896476-1----46899993--885
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 20011112101233332333232566520000000000024554200102356416775130233456555554226663
Q gi|254780601|r 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271 (573)
Q Consensus 192 ~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~ 271 (573)
.- .... .. .... .....+..... .......++++||. ...-+.+.+.|.+.|+..
T Consensus 202 ~~-------~~~~-~~-----~~~~----~~~~~~~~~~~-------~~~~~~k~v~afsG-IanP~~F~~~L~~~g~~i 256 (334)
T PRK00652 202 AQ-------EGEI-PM-----RLAP----GAAVNLRTGES-------RDVLKGKRVVAFAG-IGHPPRFFATLRNLGIEV 256 (334)
T ss_pred CC-------CHHH-HH-----HHCC----CCCEECCCCCC-------CCCCCCCEEEEEEE-CCCHHHHHHHHHHCCCEE
T ss_conf 43-------1104-55-----5365----66367666554-------63357981899994-488699999999769927
Q ss_pred CC-----CCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 01-----04899999999998665448814998538
Q gi|254780601|r 272 VA-----LSGELSQQERSNALQMMRDGRARVCIATD 302 (573)
Q Consensus 272 ~~-----lhg~~~q~~R~~~~~~fr~g~~~vLV~TD 302 (573)
.. =|-.-++.+=..+.+..+... ..+|||.
T Consensus 257 ~~~~~fpDHh~ys~~dl~~i~~~a~~~~-~~iiTTE 291 (334)
T PRK00652 257 VGTVAFPDHQSFTKADLEALVSLAQRQG-LSLLMTE 291 (334)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-CEEEECC
T ss_conf 3425779866689999999999998289-9389855
No 424
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=79.72 E-value=4.4 Score=19.75 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=18.7
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 75996999928987468999999999861
Q gi|254780601|r 35 LREKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 35 l~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
-.|.-+.+..++|||||. ++-+|..+.
T Consensus 38 ~~Ge~vaIvG~sGsGKST--L~~ll~gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKST--VVALLENFY 64 (226)
T ss_pred CCCCEEEEECCCCCHHHH--HHHHHHCCC
T ss_conf 299999999999984999--999996454
No 425
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=79.62 E-value=1.2 Score=23.56 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=26.9
Q ss_pred CCCEEEECCCCCCH-HHHHHHHHHHHHHCCCC--CCCCCCCCE-------EEEEC-CCHHHHHHHHHHHHHHHHHC
Q ss_conf 99699992898746-89999999998610421--225568827-------99984-99899999999999985446
Q gi|254780601|r 37 EKDVLVSAQTGSGK-TVAFGLALASTLLAEND--RFSPASAPL-------ALAIA-PTRELAVQVGRELEWLYAKT 101 (573)
Q Consensus 37 g~d~i~~a~TGsGK-T~af~lp~l~~l~~~~~--~~~~~~~~~-------~lil~-PTrELa~Qv~~~~~~l~~~~ 101 (573)
|=-+ ++.+||||| |++- .+.+++..... +.-+.-.|- -.||. |+ =.||-..+.+|..++
T Consensus 150 GLGL-iCG~TGSGKSTl~A--aiY~~~l~t~pdRKivT~EDPvEY~L~~~~~~l~ap~---Q~~IGRDv~sFa~Gl 219 (374)
T TIGR02525 150 GLGL-ICGETGSGKSTLAA--AIYRHCLETYPDRKIVTYEDPVEYILGSPDDLLPAPA---QSEIGRDVESFAEGL 219 (374)
T ss_pred CCEE-ECCCCCCCHHHHHH--HHHHHHCCCCCCCEEEEEECCEEEECCCCCCHHCCCC---CHHCCCCHHHHHHHH
T ss_conf 7802-21778972899999--9999850748897079865772123188520102763---011068767886232
No 426
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=79.58 E-value=1 Score=23.99 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=45.3
Q ss_pred CCCCCCEEEEEECCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 22464318999613110010012--357888752143342256311112220011112
Q gi|254780601|r 144 LNISHLKAVVLDEADEMLDLGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 144 l~l~~v~~lVlDEaD~ml~~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
+.-.....+||||.--.++.|+. +++..+++.-|...-.+|..-..|+++.+++..
T Consensus 110 l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~rp~~~evVLTGR~~p~~L~e~ADl 167 (190)
T PRK05986 110 LADESYDLVVLDELTYALKYGYLDLEEVLEALNNRPGMQHVVITGRGAPRELIEAADL 167 (190)
T ss_pred HHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCH
T ss_conf 8588888895376799985599589999999982899876999799999999986505
No 427
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.44 E-value=4.5 Score=19.69 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=42.5
Q ss_pred HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC-------C-CCCC--------CCC-CCCHHHHHHHHHHHHCCCEEE
Q ss_conf 4200102356416775130233456555554226-------6-6301--------048-999999999986654488149
Q gi|254780601|r 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-------F-QVVA--------LSG-ELSQQERSNALQMMRDGRARV 297 (573)
Q Consensus 235 l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g-------~-~~~~--------lhg-~~~q~~R~~~~~~fr~g~~~v 297 (573)
+.+-+....|..-++|+.+-.-+.++...|.... | +++. |.| +-+|++=..+++.+-+..-+|
T Consensus 165 Ign~~~~~~p~~~v~Y~tae~F~~~~v~al~~~~~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqi 244 (447)
T PRK00149 165 IGNYILEKNPNAKVVYVSSEKFTNDFVKALRNNAMEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQI 244 (447)
T ss_pred HHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999985899728995499999999999851869999999972885432148886055779999999999999849968
Q ss_pred EEECCCCCCC
Q ss_conf 9853865001
Q gi|254780601|r 298 CIATDVAARG 307 (573)
Q Consensus 298 LV~TDvaaRG 307 (573)
++|.|-.-.-
T Consensus 245 v~tsd~~P~~ 254 (447)
T PRK00149 245 VITSDRPPKE 254 (447)
T ss_pred EEECCCCHHH
T ss_conf 9957889676
No 428
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=79.14 E-value=4 Score=19.99 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=27.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 59969999289874689999999998610421225568827999849989999999999998
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l 97 (573)
.|.-+++..++|||||. |+.-.+....... -.+++++ +-|-..|+.+.+..+
T Consensus 31 ~g~~~li~G~~G~GKt~-~~~~f~~~~~~~g--------~~~~~~~-~ee~~~~~~~~~~~~ 82 (241)
T PRK06067 31 FGSLILIEGENDTGKSV-LSQQFVWGALNQG--------KRGLAIT-TENTSKSYLKQMESL 82 (241)
T ss_pred CCEEEEEECCCCCCHHH-HHHHHHHHHHHCC--------CEEEEEE-ECCCHHHHHHHHHHC
T ss_conf 99089998079988799-9999999998679--------8299999-428999999999983
No 429
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=78.95 E-value=2.1 Score=21.97 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=33.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 56416775130233456555554226663010489999
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q 280 (573)
.....+++|.+-......+.+|.+.||.+..|-|+|..
T Consensus 55 k~~~ivl~C~~G~RS~~AA~~L~~~G~~v~~L~GG~~A 92 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLAA 92 (95)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 89839998599987999999999869976995786123
No 430
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=78.63 E-value=4.7 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 7986889999775002899888300364
Q gi|254780601|r 477 QKAEARWLMPMLCRSSGINRQSIGAIRV 504 (573)
Q Consensus 477 d~v~p~~ivgai~~~~~i~~~~IG~I~i 504 (573)
.|.-.-.|+..|++-....+ |.|.+
T Consensus 500 sGsGKSTL~kll~Gl~~p~~---G~i~i 524 (694)
T TIGR03375 500 IGSGKSTLLKLLLGLYQPTE---GSVLL 524 (694)
T ss_pred CCCCHHHHHHHHCCCCCCCC---CEEEE
T ss_conf 89878899998556758998---87998
No 431
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=78.62 E-value=4.7 Score=19.53 Aligned_cols=120 Identities=23% Similarity=0.243 Sum_probs=53.9
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCH
Q ss_conf 969999289874689-999999998610421225568827999849989999999999998544--69879999889987
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~--~~~~v~~~~gg~~~ 114 (573)
+-.+-..+-|+|||- |.+|.- .|++... ||-+-|-+ |..+..+..+ ..+.|.-+-+..+.
T Consensus 38 HAYLFsGprG~GKTt~ARilAk--aLNC~~~--------------~~~~PCg~-C~sC~~i~~g~~~~~DviEiDAAS~~ 100 (775)
T PRK07764 38 HAYLFSGPRGCGKTSSARILAR--SLNCAQG--------------PTSTPCGV-CDSCVALAPGGPGSLDVVEIDAASHG 100 (775)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHCCCCC--------------CCCCCCCC-CHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf 3376237888788899999999--9668999--------------99898888-76378886389888866873156556
Q ss_pred -HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCC
Q ss_conf -99999612897599822310133210001224643189996131100100123578887521--433422563111122
Q gi|254780601|r 115 -HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISP 191 (573)
Q Consensus 115 -~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~ 191 (573)
.++++.|... +.-+| .-++-|.+||||+++|-.-+| +.+||.+ |..+-..+|-.|=|.
T Consensus 101 gVddiReL~e~---~~y~P------------~~~ryKVyIIDEaHmls~~af----NALLKtLEEPP~hvvFIlaTTep~ 161 (775)
T PRK07764 101 GVDDARELRER---AFFAP------------AQSRYRIFIIDEAHMVTTAGF----NALLKIVEEPPEHLIFIFATTEPE 161 (775)
T ss_pred CHHHHHHHHHH---CCCCC------------CCCCEEEEEEECHHHHCHHHH----HHHHHHHCCCCCCEEEEEECCCHH
T ss_conf 88999999985---47687------------678635999853544079999----999886227864627999548735
Q ss_pred CC
Q ss_conf 20
Q gi|254780601|r 192 AI 193 (573)
Q Consensus 192 ~i 193 (573)
.|
T Consensus 162 ki 163 (775)
T PRK07764 162 KV 163 (775)
T ss_pred HC
T ss_conf 47
No 432
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=78.48 E-value=4.8 Score=19.50 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=29.4
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 464318999613110010012357888752143342256311112220011112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~ 199 (573)
+.+-+.++|||-=-=||..-+.++..+++.+.+++ |+++|.-.-.++..+|.+
T Consensus 149 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~~-TillssH~l~e~e~lcdr 201 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK-TIILSTHIMQEVEAICDR 201 (301)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCCE
T ss_conf 07998999948866789899999999999875999-999987858999986999
No 433
>KOG2227 consensus
Probab=78.21 E-value=4.9 Score=19.45 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=12.3
Q ss_pred CCCEEEEEECCCCCCC
Q ss_conf 6431899961311001
Q gi|254780601|r 147 SHLKAVVLDEADEMLD 162 (573)
Q Consensus 147 ~~v~~lVlDEaD~ml~ 162 (573)
...-.+|+||-|.+..
T Consensus 255 k~~~llVlDEmD~L~t 270 (529)
T KOG2227 255 KFMLLLVLDEMDHLIT 270 (529)
T ss_pred CCEEEEEECHHHHHHH
T ss_conf 6338987212567760
No 434
>PRK13695 putative NTPase; Provisional
Probab=78.17 E-value=4.3 Score=19.78 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=60.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 69999289874689999999998610421225568827999849989999999999998544698799998899879999
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~ 118 (573)
-+.+..+.|+|||... .=+++.|....-. ....+-.+-|| -+.-.|+.+..+.+|....--.
T Consensus 5 kI~iTG~PGvGKTTli-~Kv~~~L~~~g~~------v~GF~T~Evre-----------~G~R~GF~vv~l~~g~~~~lA~ 66 (174)
T PRK13695 5 RIGITGMPGVGKTTLV-LKIAELLAREGYK------VGGFITEEVRE-----------GGKRIGFKIIDLDTGEEGILAR 66 (174)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHCCCE------EEEEEEEEEEC-----------CCEEEEEEEEECCCCCEEEEEE
T ss_conf 9998789998899999-9999998636961------74699525603-----------8828505999905885687675
Q ss_pred HHHCCCCE---EEEECCC--CH-HHHHHCCCCCCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 96128975---9982231--01-3321000122464318999613110--010012357888752143342256311112
Q gi|254780601|r 119 RDLQNGAH---IVVGTPG--RL-CDHIRGKGLNISHLKAVVLDEADEM--LDLGFRDDIEFILDSSPKKRRMLMFSATIS 190 (573)
Q Consensus 119 ~~l~~~~~---iiv~TPg--rl-~d~~~~~~l~l~~v~~lVlDEaD~m--l~~gf~~~i~~i~~~~p~~~q~~l~SAT~~ 190 (573)
.....++. -.|-+++ ++ +..+.+ .+++.+.+|+||.-.| ....|.+.|+.+|++ ++ .++ ||++
T Consensus 67 ~~~~~~~~VgkY~V~~~~~e~~~~~~l~~---a~~~~dlivIDEIG~MEl~s~~F~~~V~~~L~s---~k-pvl--~tih 137 (174)
T PRK13695 67 VGAVSRPRVGKYVVNLEDLERIAIPAISR---ALREADLIIIDEIGPMELKSKKFVSAVEEVLKS---EK-PVI--ATVH 137 (174)
T ss_pred CCCCCCCCCCCEEEEHHHHHHHHHHHHHH---CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC---CC-CEE--EEEC
T ss_conf 37889855456687168978998999983---535787999963103311049999999999738---99-899--9977
Q ss_pred CC
Q ss_conf 22
Q gi|254780601|r 191 PA 192 (573)
Q Consensus 191 ~~ 192 (573)
.+
T Consensus 138 ~p 139 (174)
T PRK13695 138 RP 139 (174)
T ss_pred HH
T ss_conf 58
No 435
>PRK08694 consensus
Probab=78.02 E-value=4.9 Score=19.41 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHH---HHHHHCC
Q ss_conf 024554200102--3564167751302334565555542--26663010-489999999999---8665448
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNA---LQMMRDG 293 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~---~~~fr~g 293 (573)
-|..+..++... .+....+.|++--...++++..|.. .+++...+ .|.|+..+..++ ...+.+.
T Consensus 230 GKTalalnia~~~a~~~~~~V~~fSLEMs~~~l~~Rlla~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~ 301 (468)
T PRK08694 230 GKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQSVLKTGRLEDEHWGRLNEAVVKLSDA 301 (468)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 378999999999998479847997788999999999999725986321104899999999999999998629
No 436
>TIGR02168 SMC_prok_B chromosome segregation protein SMC; InterPro: IPR011890 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . The smc gene is often associated with scpB (IPR005234 from INTERPRO) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle , , .; GO: 0005515 protein binding, 0005524 ATP binding, 0005694 chromosome.
Probab=77.61 E-value=4.3 Score=19.78 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHH
Q ss_conf 9999289874689
Q gi|254780601|r 40 VLVSAQTGSGKTV 52 (573)
Q Consensus 40 ~i~~a~TGsGKT~ 52 (573)
+-+..|-||||+=
T Consensus 26 TgiVGPNGcGKSN 38 (1191)
T TIGR02168 26 TGIVGPNGCGKSN 38 (1191)
T ss_pred EEEECCCCCCCCC
T ss_conf 7986279987001
No 437
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=77.56 E-value=5.1 Score=19.33 Aligned_cols=125 Identities=15% Similarity=0.224 Sum_probs=58.8
Q ss_pred HHHHCCC---CEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH--HHHCCCEE
Q ss_conf 9997599---69999289874689-999999998610421225568827999849989999999999998--54469879
Q gi|254780601|r 32 NPDLREK---DVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVV 105 (573)
Q Consensus 32 p~~l~g~---d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l--~~~~~~~v 105 (573)
-.+.+|+ -.+..++.|+||+. |+.+ ...++....... .|. - .+..+..+ +.+.++.+
T Consensus 15 ~~~~~~r~~HA~L~~G~~G~Gk~~la~~~--a~~llC~~~~~~---~~C-----------g-~C~sC~l~~~g~HPD~~~ 77 (324)
T PRK06871 15 QTFLQGRGHHALLFKADSGLGTEQLIRAL--AQWLMCQAPGDE---QPC-----------G-QCHSCHLFQAGNHPDFHI 77 (324)
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHH--HHHHHCCCCCCC---CCC-----------C-CCHHHHHHHCCCCCCEEE
T ss_conf 99986995437876899997899999999--999828999999---988-----------8-898999997389998799
Q ss_pred EEEECCCCH-HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCE
Q ss_conf 999889987-99999612897599822310133210001224643189996131100100123578887521--433422
Q gi|254780601|r 106 AVCIGGVSV-HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRM 182 (573)
Q Consensus 106 ~~~~gg~~~-~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~ 182 (573)
..-.-|.++ .+|++.|. +.+.... ..+.-|.+++|+||.|-. ..-+.+|+.+ |...-.
T Consensus 78 i~~~~~k~I~vd~IR~l~--------------~~~~~~~-~~g~~KV~iI~~ae~m~~----~AaNALLKtLEEPp~~~~ 138 (324)
T PRK06871 78 LEPIDGKDIGVDQVREIN--------------EKVSQFA-QQGGNKVVYIQGAERLTE----AAANALLKTLEEPRPNTY 138 (324)
T ss_pred EECCCCCCCCHHHHHHHH--------------HHHHHCC-CCCCCEEEEECCHHHHHH----HHHHHHHHHHCCCCCCEE
T ss_conf 846788878899999999--------------9986462-205966999758888579----999999998338987838
Q ss_pred EEEECCCCCC
Q ss_conf 5631111222
Q gi|254780601|r 183 LMFSATISPA 192 (573)
Q Consensus 183 ~l~SAT~~~~ 192 (573)
.++.++-|..
T Consensus 139 fiL~t~~~~~ 148 (324)
T PRK06871 139 FLLQADLSAS 148 (324)
T ss_pred EEEEECCCCC
T ss_conf 9998787010
No 438
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=77.33 E-value=2 Score=22.03 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=31.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC-CCCCCCCCCCH
Q ss_conf 564167751302334565555542266-63010489999
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQ 280 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~q 280 (573)
....++|||.+-......+..|...|| ++..|.|+|..
T Consensus 55 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~L~GG~~a 93 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEA 93 (96)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHH
T ss_conf 898189980896689999999998289833998887898
No 439
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=77.25 E-value=2.2 Score=21.78 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=11.6
Q ss_pred CEEEECCCCCCHHH
Q ss_conf 69999289874689
Q gi|254780601|r 39 DVLVSAQTGSGKTV 52 (573)
Q Consensus 39 d~i~~a~TGsGKT~ 52 (573)
=+++..|||||||.
T Consensus 6 ii~i~GpTasGKs~ 19 (304)
T PRK00091 6 LIVLVGPTASGKTA 19 (304)
T ss_pred EEEEECCCCCCHHH
T ss_conf 79998988658999
No 440
>PRK07263 consensus
Probab=77.07 E-value=5.2 Score=19.24 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHH
Q ss_conf 024554200102--3564167751302334565555542--26663010-4899999999998
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNAL 287 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~ 287 (573)
-|..+..++... ....+.+.|++--...+++...+-. .+++...+ .|.++..+..++.
T Consensus 215 GKTa~alnia~~iA~~~~~~V~~fSlEMs~~ql~~R~la~~~~i~~~~i~~g~l~~~e~~~~~ 277 (453)
T PRK07263 215 GKTAFVLNIAQNVGTKQKKTVAIFSLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVT 277 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHH
T ss_conf 478999999999998559828999246998999999999861733103313652479999999
No 441
>PRK13946 shikimate kinase; Provisional
Probab=76.90 E-value=3.3 Score=20.61 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 999999999759969999289874689
Q gi|254780601|r 26 VQEAILNPDLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 26 iQ~~~ip~~l~g~d~i~~a~TGsGKT~ 52 (573)
-|+.-|-+.|..++++.....|||||.
T Consensus 9 ~~~~~~~~~l~kknIvLIG~mGsGKSt 35 (195)
T PRK13946 9 SQEEQIRAALGKRTVVLVGLMGAGKST 35 (195)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 559999998589958998999998899
No 442
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=76.87 E-value=1.4 Score=23.08 Aligned_cols=15 Identities=47% Similarity=0.758 Sum_probs=13.6
Q ss_pred CCEEEECCCCCCHHH
Q ss_conf 969999289874689
Q gi|254780601|r 38 KDVLVSAQTGSGKTV 52 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~ 52 (573)
|=||...|.||||||
T Consensus 93 KGVLLvGPPGTGKTL 107 (505)
T TIGR01241 93 KGVLLVGPPGTGKTL 107 (505)
T ss_pred CCEEEECCCCCCHHH
T ss_conf 714731787842467
No 443
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=76.85 E-value=5.3 Score=19.20 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=20.3
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 46431899961311001001235788875214
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p 177 (573)
.+.++.+++||||.|---+| +.+..|.+..+
T Consensus 163 ~~~~~~iivDEA~~L~~~al-e~lr~i~d~~G 193 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRAL-EELRRIHDKTG 193 (297)
T ss_pred CCCCCEEEEEHHHCCCHHHH-HHHHHHHHHHC
T ss_conf 15765266503212586899-99999887508
No 444
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=76.67 E-value=5.4 Score=19.17 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=19.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEE--C--CCCHHHHHHHHCCCCE-EEEECC
Q ss_conf 7999849989999999999998544698799998--8--9987999996128975-998223
Q gi|254780601|r 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--G--GVSVHRERRDLQNGAH-IVVGTP 132 (573)
Q Consensus 76 ~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~--g--g~~~~~q~~~l~~~~~-iiv~TP 132 (573)
.+|+..||=.. |. ......|.++..+- - +.+++.-..++..++. |++++|
T Consensus 116 ~Vl~~~Ptf~~----Y~---~~~~~~G~~v~~vpl~~~~~~d~~~l~~ai~~~tklv~l~nP 170 (374)
T PRK05166 116 RVVTLYPSFPL----HE---DYPTLMGARVERVTVTPDLTVDVDALLAAVARKPRMLMFSNP 170 (374)
T ss_pred EEEECCCCHHH----HH---HHHHHHCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEECC
T ss_conf 89877887778----99---999982981599736866797999999861569878998289
No 445
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=76.64 E-value=4.7 Score=19.53 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 59969999289874689999999998-6104212255688279998499899999999999985
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALAST-LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~-l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
.|.-+++..++|||||. |++-.+.. +....+ .++.++ +.|=..|+.+.+..++
T Consensus 18 ~gs~~LI~G~pGsGKT~-la~qfl~~ga~~~ge--------~~lYis-~ee~~~~l~~~~~~~g 71 (231)
T pfam06745 18 EGRVVLITGGPGTGKTI-FGLQFLYNGALEYGE--------PGVYVT-LEEPPEDLRENAKSFG 71 (231)
T ss_pred CCEEEEEECCCCCCHHH-HHHHHHHHHHHHCCC--------CEEEEE-ECCCHHHHHHHHHHCC
T ss_conf 99699998589725999-999999999986589--------689998-1379999999999829
No 446
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=76.28 E-value=5.1 Score=19.29 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=53.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 99992898746899999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~ 119 (573)
+++..+.|+|||.. +.-+++.|....- .....+-.+-|| =+.-.|+.+..+..|....--..
T Consensus 2 i~ITG~pGvGKTTl-i~kv~~~l~~~~~------~v~GF~T~evre-----------~g~R~GF~iv~l~~g~~~~la~~ 63 (168)
T pfam03266 2 IFITGPPGVGKTTL-VKKVIELLKSEGV------KVGGFYTPEVRE-----------GGRRIGFDIVDLASGERGPLARV 63 (168)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHHCCC------EEEEEEECCEEC-----------CCCEEEEEEEECCCCCEEEEEEE
T ss_conf 89978999889999-9999999986797------074899302125-----------89378999999047826774440
Q ss_pred HHCCCCEEEEECCCCHHHHHH---CCCCC--CCCCEEEEEECCCCC--CCCHHHHHHHHHHH
Q ss_conf 612897599822310133210---00122--464318999613110--01001235788875
Q gi|254780601|r 120 DLQNGAHIVVGTPGRLCDHIR---GKGLN--ISHLKAVVLDEADEM--LDLGFRDDIEFILD 174 (573)
Q Consensus 120 ~l~~~~~iiv~TPgrl~d~~~---~~~l~--l~~v~~lVlDEaD~m--l~~gf~~~i~~i~~ 174 (573)
....+ .-||..+-..+-++ -..|+ +.+.+.+|+||.-.| ....|.+.|+.+|+
T Consensus 64 ~~~~~--~~vGky~v~~~~fe~~~~~~L~~a~~~~dlivIDEIG~mEl~s~~F~~~v~~~l~ 123 (168)
T pfam03266 64 GGVSG--PRVGKYVVNLEEFEEIALPALRRALEEADLIIIDEIGPMELKSPKFREAIEEVLS 123 (168)
T ss_pred CCCCC--CCCCCCEECHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 68877--5457716668999999999998406689899997631453314999999999966
No 447
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=76.09 E-value=2.3 Score=21.68 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
.|.=||...|.|||||. +|-++--|
T Consensus 30 ~GEiViltGPSGSGKTT--LLtLiG~L 54 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTT--LLTLIGGL 54 (220)
T ss_pred CCEEEEEECCCCCCHHH--HHHHHHHH
T ss_conf 76479843788984688--99988762
No 448
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=75.73 E-value=2.2 Score=21.80 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=23.9
Q ss_pred HCCCCCCCCEEEEECCCHHH---HHHHHHHHHHCCCC
Q ss_conf 00102356416775130233---45655555422666
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRAS---VSRFTKVLAEHLFQ 270 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~---~~~l~~~L~~~g~~ 270 (573)
+||++-+|..+-|+.+-|-- =-+|+..|.+.||.
T Consensus 210 rlL~~I~PD~VhVl~~GrIV~sGd~~La~~le~~GY~ 246 (248)
T TIGR01978 210 RLLNYIKPDVVHVLVDGRIVKSGDVELAKELEEKGYD 246 (248)
T ss_pred HHHHHCCCCEEEEEECCEEEEECCHHHHHHHHHHCCC
T ss_conf 8841318988999746758764898999999860366
No 449
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=75.67 E-value=5.7 Score=18.99 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=50.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-HHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 599699992898746899999999986104212255688279998499899-9999999999854469879999889987
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL-AVQVGRELEWLYAKTGVVVAVCIGGVSV 114 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL-a~Qv~~~~~~l~~~~~~~v~~~~gg~~~ 114 (573)
.|.=+++.|.||+|||. |++-+..++.... +-.++++++ |+ ..++..-+ ++...++....+..|.-.
T Consensus 18 ~G~l~vi~g~pg~GKS~-~~~~~a~~~a~~~-------g~~Vl~~sl--Em~~~~~~~R~--~a~~~~v~~~~i~~~~~~ 85 (186)
T pfam03796 18 KGDLIIIAARPSMGKTA-FALNIARNAALKQ-------DKPVLFFSL--EMSAEQLAERL--LSSESRISSSKLRSGQLS 85 (186)
T ss_pred CCCEEEEEECCCCCHHH-HHHHHHHHHHHHC-------CCCEEEECC--CCCHHHHHHHH--HHHHHCCCHHHHHCCCHH
T ss_conf 88179999679998799-9999999999970-------996687547--55299999999--998626765554125121
Q ss_pred HHHH-------HHHCCCCEEEEECCCCHHHH----HHCCCCCCCCCEEEEEECCCCC
Q ss_conf 9999-------96128975998223101332----1000122464318999613110
Q gi|254780601|r 115 HRER-------RDLQNGAHIVVGTPGRLCDH----IRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 115 ~~q~-------~~l~~~~~iiv~TPgrl~d~----~~~~~l~l~~v~~lVlDEaD~m 160 (573)
..+. ..+.+.+-.+..+|+-=++. +++ ...-..++.+|+|=.+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~-~~~~~~~~~vvvDyl~l~ 141 (186)
T pfam03796 86 DEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARR-LKREHGLGLIVIDYLQLM 141 (186)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-HHHHCCCCEEEEEHHHHC
T ss_conf 67999999999998539868847999989999999999-998559988997489863
No 450
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.62 E-value=1.9 Score=22.24 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=30.9
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHH
Q ss_conf 4643189996131100100123578887521433-42256311112220011112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~-~q~~l~SAT~~~~i~~l~~~ 199 (573)
..+-+.+++||----||..-..++..++..+.++ ..|+++.---..++..++.+
T Consensus 145 ~~~P~llllDEP~s~LD~~~~~~i~~~l~~l~~~~~~T~i~vTHd~~~a~~~aDr 199 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCE
T ss_conf 7389989992887646999999999999999998299999987899999996999
No 451
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=75.61 E-value=1.5 Score=22.96 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=10.7
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1899961311001001235788875
Q gi|254780601|r 150 KAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 150 ~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
+.+|.|--=....-=|.+..+.||.
T Consensus 238 ~AIiYDkgC~f~~~fyd~~~DviLN 262 (613)
T TIGR02759 238 RAIIYDKGCTFVSRFYDPSQDVILN 262 (613)
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEC
T ss_conf 5899825742021326888874606
No 452
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=75.17 E-value=0.75 Score=24.90 Aligned_cols=42 Identities=26% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 96999928987468999999999861042122556882799984998999999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV 90 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv 90 (573)
..+++.|||+|||...++||-|-.... -++|+=+-.|+-.=.
T Consensus 176 eHvl~~APTRSGKGVGiVIPNLLsw~~-----------SvVV~DIKgEn~~lT 217 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGA-----------SSVITDLKGELWALT 217 (636)
T ss_pred CEEEEECCCCCCCCCEEECCCCCCCCC-----------CEEEEECCHHHHHHH
T ss_conf 369997689999860587377667799-----------889993465789998
No 453
>PRK10416 cell division protein FtsY; Provisional
Probab=75.17 E-value=5.9 Score=18.91 Aligned_cols=44 Identities=11% Similarity=0.275 Sum_probs=21.9
Q ss_pred CEEEEECC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 41677513-----023345655555422666301048999999999986654
Q gi|254780601|r 245 KNAIVFCS-----TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291 (573)
Q Consensus 245 ~~~ivF~~-----t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr 291 (573)
..+|.||. ---.+-.|+.+|.+.|+++....+|. -|-.++++++
T Consensus 295 P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DT---fRaAAieQL~ 343 (499)
T PRK10416 295 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT---FRAAAVEQLQ 343 (499)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHHHHHH
T ss_conf 879999747878789899999999997799537884066---7568999999
No 454
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=75.09 E-value=2 Score=22.06 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CCCCCCCCCH
Q ss_conf 10235641677513023345655555422666-3010489999
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQ 280 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~q 280 (573)
|+.++..-+||-|+.-..+...+..|.+.||. +..|||+|+.
T Consensus 60 Lek~Kgk~VViV~~~g~~a~~fa~~Lvk~Gf~rVcvL~GGi~~ 102 (105)
T cd01525 60 LENYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINA 102 (105)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 9975898299988998679999999998499869993382753
No 455
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=74.87 E-value=6 Score=18.86 Aligned_cols=102 Identities=25% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCC------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 289874689999999998610421------22556882799984998999999999999854469879999889987999
Q gi|254780601|r 44 AQTGSGKTVAFGLALASTLLAEND------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 44 a~TGsGKT~af~lp~l~~l~~~~~------~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+--|||||= +.+-+++.+....- +.........+.+.|... +.++-+|-.-+++..++.|. ++. +-..-
T Consensus 65 tvGGTGKTP-~vi~L~~~L~~~G~k~~IlSRGYg~~~~~~~~v~~~~~-~~~vGDEpllla~~~~~pV~--V~~-~R~~~ 139 (339)
T PRK01906 65 TVGGTGKTP-TVIALVDALRAAGFTPGVVSRGYGAKVKAPTAVTPASR-ASDAGDEPLLIARRTDAPVW--VCP-DRVAA 139 (339)
T ss_pred EECCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCC-HHHCCCHHHHHHHCCCCEEE--EEC-CHHHH
T ss_conf 768875779-99999999997699559985464555677666237864-43317689998743596089--825-69999
Q ss_pred HHHH---CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 9961---28975998223101332100012246431899961
Q gi|254780601|r 118 RRDL---QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 (573)
Q Consensus 118 ~~~l---~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDE 156 (573)
.+.| ..++||||.-=| +.| ..+ -.++..+|+|.
T Consensus 140 ~~~l~~~~~~~dvIIlDDG--fQh---~~l-~rDl~Ivl~d~ 175 (339)
T PRK01906 140 AQALLAAHPEVDVIVSDDG--LQH---YRL-ARDVEIVVFDH 175 (339)
T ss_pred HHHHHHHCCCCCEEEECCC--CCC---CCC-CCCEEEEEECC
T ss_conf 9999974889988995685--313---334-68759999878
No 456
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=74.66 E-value=2.4 Score=21.47 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=18.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
.|.-+.+..+.|||||. +|-++..+.
T Consensus 23 ~Ge~~~i~GpSGsGKST--LL~~i~gl~ 48 (206)
T TIGR03608 23 KGKMVAIVGESGSGKST--LLNIIGLLE 48 (206)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHCCC
T ss_conf 99899998799970999--999997599
No 457
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=74.43 E-value=1.6 Score=22.67 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 599699992898746899999999986
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
+|.-+.+..++|||||. +|-++..+
T Consensus 26 ~Ge~v~i~GpSGsGKST--Ll~~i~gl 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKST--LLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCC
T ss_conf 99899999799953999--99999629
No 458
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.18 E-value=6.2 Score=18.75 Aligned_cols=278 Identities=16% Similarity=0.142 Sum_probs=110.2
Q ss_pred CCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-H
Q ss_conf 969999289874689-99999999861042122556882799984998999999999999854469879999889987-9
Q gi|254780601|r 38 KDVLVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-H 115 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~ 115 (573)
+--+-...-|+|||. |.++.-- |++... .+...+--.| |-+ |..+..+..+..+.+.-+-+-.+- .
T Consensus 39 haylf~G~rGvGKTt~ari~Ak~--lnc~~~-----~~~~g~~~~p----cg~-C~~C~~i~~g~~~d~~EiDaas~~~v 106 (721)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKS--LNCTGP-----DGEGGITAQP----CGQ-CRACTEIDAGRFVDYIEMDAASNRGV 106 (721)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HCCCCC-----CCCCCCCCCC----CCC-CHHHHHHHCCCCCCEEEEECCCCCCH
T ss_conf 44750279988898999999999--768998-----6678987887----877-65468775689876477436767888
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 9999612897599822310133210001224643189996131100100123578887521--43342256311112220
Q gi|254780601|r 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 116 ~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
++++.|..+ +.-.| .-++-|..+|||+.+|=.-.| +.+|+.+ |...-..+|-.|=|..|
T Consensus 107 ~~~r~l~~~---~~y~P------------~~~~~KvyiiDevhmls~~af----nalLKtlEePP~hv~FilaTT~~~Ki 167 (721)
T PRK12323 107 DEMAQLLDQ---AVYAP------------TAGRFKVYMIDEVHMLTNHAF----NAMLKTLEEPPPHVKFILATTDPQKI 167 (721)
T ss_pred HHHHHHHHH---CCCCC------------CCCCEEEEEEECCCCCCHHHH----HHHHHHHCCCCCCEEEEEECCCHHHC
T ss_conf 999999985---45588------------766446999854000589999----99998401797553899943863448
Q ss_pred H-HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH----HHHHHCCCCC---------CCCEEEEECCCHHHHHH
Q ss_conf 0-11112101233332333232566520000000000024----5542001023---------56416775130233456
Q gi|254780601|r 194 T-TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYH---------GAKNAIVFCSTRASVSR 259 (573)
Q Consensus 194 ~-~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~----~~l~~ll~~~---------~~~~~ivF~~t~~~~~~ 259 (573)
- .+..+.+ ..... ......|..+...+-..+++ .+|.-|-..- --+++|.||+.+-..+.
T Consensus 168 p~TilSRc~----~f~~~--~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQaia~~~g~~~~~~ 241 (721)
T PRK12323 168 PVTVLSRCL----QFNLK--QMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAIAYSAGNVSEEA 241 (721)
T ss_pred CHHHHHHHH----HCCCC--CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 588987765----42347--899999999999999983997799999999997589647688899999986589626999
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 555554226663010489999999999866544881499--853865001457887338970588747899986030103
Q gi|254780601|r 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC--IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337 (573)
Q Consensus 260 l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vL--V~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR 337 (573)
+..-|.. +.+..=...++..-++...-+ +...++.+|+|+..+ =.+.-+.+|++--.--
T Consensus 242 v~~mlg~-----------~d~~~~~~ll~al~~~d~~~~~~~~~~~~~~~~d~~~~--------l~~l~~~lh~ia~~q~ 302 (721)
T PRK12323 242 VRGMLGA-----------IDQRYLVRLLDALAAEDGAAVLAIADEMADRSLSFAGA--------LQDLASLLSKVALAQR 302 (721)
T ss_pred HHHHHCC-----------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH--------HHHHHHHHHHHHHHHH
T ss_conf 9998688-----------87789999999999558999999999999868899999--------9999999999999985
Q ss_pred CCC---C--C--EE----EEEECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 788---8--6--02----564059999999999998506641056
Q gi|254780601|r 338 AGR---K--G--MS----VFVIPQNMQRRAERLFREANVSVVWEP 371 (573)
Q Consensus 338 ag~---~--G--~a----i~l~~~~e~~~~~~i~~~~~~~~~~~~ 371 (573)
... . + .. -..+++.+...+.+|.-..+..+...+
T Consensus 303 ~p~~~~~~~~~~~~~~~la~~~~~e~~Ql~yqi~l~gr~dl~~ap 347 (721)
T PRK12323 303 VPAAVQDDWPEADDIRRLAGVFDAQAVQLFYQVANLGRSELALAP 347 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 620013555008999999962999999999999983176651198
No 459
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=73.96 E-value=6 Score=18.82 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 5996999928987468999999999861042122556882799984998999
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
-.+.+-+.|.||||||-.-. -+++.+.... +..+||+=|--|-+
T Consensus 22 v~rH~aIlg~TGsGKS~tv~-vLl~~l~~~~-------~~~vlVfDpHgEY~ 65 (218)
T pfam01935 22 VSRHFAILGSTGSGKSNTVA-VLLEELLEKK-------GATVLIFDPHGEYG 65 (218)
T ss_pred HHHHEEEECCCCCCHHHHHH-HHHHHHHHCC-------CCCEEEECCCCCCH
T ss_conf 34214787269997699999-9999998547-------99789982886363
No 460
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=73.77 E-value=4.9 Score=19.45 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCCCH-HHHHHHHHH
Q ss_conf 599699992898746-899999999
Q gi|254780601|r 36 REKDVLVSAQTGSGK-TVAFGLALA 59 (573)
Q Consensus 36 ~g~d~i~~a~TGsGK-T~af~lp~l 59 (573)
.|.-+-+....|||| ||=|+|.-|
T Consensus 30 ~GE~~~IvG~SGSGKSTLLHlLGGL 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6633798736787168999987306
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=73.46 E-value=6.4 Score=18.63 Aligned_cols=127 Identities=26% Similarity=0.306 Sum_probs=56.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-CCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HH
Q ss_conf 99992898746899999999986104212255688279998-499-8999999999999854469879999889987-99
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI-APT-RELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HR 116 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil-~PT-rELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~-~~ 116 (573)
++...--|||||..-+ =|.+...... .-.+++. |=| |--| .++++.++...++.+..-..+.+. .-
T Consensus 103 Im~vGLqGsGKTTT~a--KLA~~lk~k~------~k~vllvaaDt~RpaA---~eQL~~la~~~~v~~~~~~~~~dp~~i 171 (453)
T PRK10867 103 VLMAGLQGAGKTTSVG--KLGKFLREKH------KKKVLVVSADVYRPAA---IKQLETLAEQVGVDFFPSDVGQKPVDI 171 (453)
T ss_pred EEEECCCCCCHHHHHH--HHHHHHHHCC------CCEEEEECCCCCHHHH---HHHHHHHHHHCCCCEECCCCCCCHHHH
T ss_conf 9997468885185899--9999999738------9837985588770589---999999998519804367889988999
Q ss_pred HHHHH----CCCCE-EEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 99961----28975-99822310133210001224643189996131100100123578887521433422563111122
Q gi|254780601|r 117 ERRDL----QNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191 (573)
Q Consensus 117 q~~~l----~~~~~-iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~ 191 (573)
-.+++ .++.| |||-|-||+- +|| ...+++..|-+.+.++--.+..-|+.-+
T Consensus 172 a~~a~~~ak~~~~DvvivDTAGRl~-----------------~d~-------~Lm~El~~i~~~~~P~e~llV~Da~~GQ 227 (453)
T PRK10867 172 VNAALKEAKLKFYDVLLVDTAGRLH-----------------VDE-------AMMDEIKQVHASINPVETLFVVDAMTGQ 227 (453)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHH-----------------CCH-------HHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 9999999997799999997876012-----------------108-------8899999998763787137974322356
Q ss_pred CCHHHHHHHC
Q ss_conf 2001111210
Q gi|254780601|r 192 AITTLAKNYQ 201 (573)
Q Consensus 192 ~i~~l~~~~~ 201 (573)
+..+.++.|-
T Consensus 228 ~a~~~a~~F~ 237 (453)
T PRK10867 228 DAANTAKAFN 237 (453)
T ss_pred HHHHHHHHHH
T ss_conf 6899999999
No 462
>PRK06321 replicative DNA helicase; Provisional
Probab=73.45 E-value=6.4 Score=18.63 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=16.1
Q ss_pred EEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHH
Q ss_conf 67751302334565555542--26663010-4899999999998
Q gi|254780601|r 247 AIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNAL 287 (573)
Q Consensus 247 ~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~ 287 (573)
+.+| +--...++++..+.. .+++...+ .|.++..+..++.
T Consensus 258 v~~f-SLEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~e~~~~~ 300 (472)
T PRK06321 258 VGIF-SLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIV 300 (472)
T ss_pred EEEE-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 6997-577999999999987403767552104799999999999
No 463
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=73.36 E-value=4.1 Score=19.95 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=14.4
Q ss_pred EEEEECCCHHHHHH----HHHHHHHCCCCC
Q ss_conf 16775130233456----555554226663
Q gi|254780601|r 246 NAIVFCSTRASVSR----FTKVLAEHLFQV 271 (573)
Q Consensus 246 ~~ivF~~t~~~~~~----l~~~L~~~g~~~ 271 (573)
..+||.++.+.+++ +...|...||.+
T Consensus 335 Tv~v~~~~~~~l~~~~~~v~~~l~~~Gf~~ 364 (815)
T PRK13873 335 TVTVWDADPRVADEKLRLVEKVIQGRDFTC 364 (815)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 999978999999999999999998589579
No 464
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=73.35 E-value=6.5 Score=18.61 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCC
Q ss_conf 4643189996131100100123578887521--43342256311112
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATIS 190 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~ 190 (573)
-+.-|.+|+|.||.|= ...-+.+|+.+ |...-++++.++-|
T Consensus 130 ~g~~kVviI~~Ae~mn----~~aaNalLK~LEEPp~~~~~iL~~~~~ 172 (342)
T PRK06964 130 RGGARVVVLYPAEALN----VAAANALLKTLEEPPPGVVFLLVSARI 172 (342)
T ss_pred CCCCEEEEECCHHHHC----HHHHHHHHHHHCCCCCCEEEEEEECCH
T ss_conf 5884499982778738----999999999723798784899986992
No 465
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=73.11 E-value=6.6 Score=18.58 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=39.1
Q ss_pred EEEEEEECHH-HCCCCHHHHHHHHHHCCCCCHHHEEEEEEC-CCCCEEEECHHHHHHHHHHHHCC
Q ss_conf 0499996702-279868899997750028998883003641-88506761899999999985148
Q gi|254780601|r 466 SSWFSLSVGS-KQKAEARWLMPMLCRSSGINRQSIGAIRVQ-PDLTFVEVSADGVDLLRRTVKLD 528 (573)
Q Consensus 466 ~~r~~InvGr-~d~v~p~~ivgai~~~~~i~~~~IG~I~i~-~~~S~vei~~~~~~~~~~~~~~~ 528 (573)
-.-+.|+.-. -+.++-++++|+|-+ .||....||.|=+. +..++|=+.++.++-+...+..-
T Consensus 88 i~~l~I~~~~kF~~l~Hrd~LGalm~-lGI~R~~iGDI~v~~d~~a~v~v~~~ia~~i~~~l~kI 151 (257)
T TIGR03069 88 IQGLLIEGNFLFDPASHEDFRGALLG-TGIVREKIGDIWVLGDRGAQALCTPELAEFLQEKLGQV 151 (257)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHH-CCCCHHHCCCEEECCCCCEEEEECHHHHHHHHHHHHHC
T ss_conf 79999975845565888899999998-59968884687985886499998379999999996303
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.96 E-value=2.2 Score=21.82 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 999928987468999999999861
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLL 63 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~ 63 (573)
+++..+||||||-.. -.+++.+.
T Consensus 4 iLitG~TGSGKTTtl-~all~~i~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 999899999799999-99998536
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=72.85 E-value=4.1 Score=19.97 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=17.6
Q ss_pred CEEEEECCCHHHH----HHHHHHHHHCCCCCC
Q ss_conf 4167751302334----565555542266630
Q gi|254780601|r 245 KNAIVFCSTRASV----SRFTKVLAEHLFQVV 272 (573)
Q Consensus 245 ~~~ivF~~t~~~~----~~l~~~L~~~g~~~~ 272 (573)
..++||..+.+.+ .++...|+..||.+.
T Consensus 377 ~tv~v~~~~~~~l~~~~~~v~~~l~~~GF~~~ 408 (852)
T PRK13891 377 SVVVLMDEDRERLEASALLVEKAINRLAFAAR 408 (852)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 89999789999999999999999986896798
No 468
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=72.64 E-value=4.1 Score=19.93 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=55.9
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCC---------CC-EEEEECCCHHHHHHHHHHHH-HHHHHC
Q ss_conf 9759969999289874689999999998610421-225568---------82-79998499899999999999-985446
Q gi|254780601|r 34 DLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPAS---------AP-LALAIAPTRELAVQVGRELE-WLYAKT 101 (573)
Q Consensus 34 ~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~-~~~~~~---------~~-~~lil~PTrELa~Qv~~~~~-~l~~~~ 101 (573)
+-.|+-+-+..+||||||. ++-.|..+.+-.. ...... .. +.+.+|| |=...|. .+. -
T Consensus 384 l~~G~r~Ai~G~SG~GKsT--LL~~L~G~l~P~~G~vtl~G~~~~~~~~~evrr~v~~~a------Q~aHlF~ttvr--~ 453 (566)
T TIGR02868 384 LPPGERVAILGPSGSGKST--LLATLAGLLDPLQGEVTLDGVPVSSLSEDEVRRRVSVFA------QDAHLFDTTVR--E 453 (566)
T ss_pred CCCCCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEECCCCHHHCCCCHHEHHEEECC------CCCCCCCCCHH--H
T ss_conf 1388608986688765789--999998402899991787773243257311000003127------88621105478--7
Q ss_pred CCEEEEEECCC----CHHHHHHH------------HCCCCEEEEECCCCHHHHHHCCC-----CCCCCCEEEEEECCCCC
Q ss_conf 98799998899----87999996------------12897599822310133210001-----22464318999613110
Q gi|254780601|r 102 GVVVAVCIGGV----SVHRERRD------------LQNGAHIVVGTPGRLCDHIRGKG-----LNISHLKAVVLDEADEM 160 (573)
Q Consensus 102 ~~~v~~~~gg~----~~~~q~~~------------l~~~~~iiv~TPgrl~d~~~~~~-----l~l~~v~~lVlDEaD~m 160 (573)
|+++.. +.. +=++-.+. |..|.|=.||.-|..+.==+|.- .-+..-..+||||==+=
T Consensus 454 NLrlar--pdaaaGDtdeE~~~aL~~vgL~~~~~~LP~Gl~T~~ge~G~~lSGGeRqRLALARaLl~~ap~llLDEPTeh 531 (566)
T TIGR02868 454 NLRLAR--PDAAAGDTDEELLAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEH 531 (566)
T ss_pred HHHHCC--CCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 887318--888998888999999997158023863857678530356430104899999999997379988986088666
Q ss_pred CCCH
Q ss_conf 0100
Q gi|254780601|r 161 LDLG 164 (573)
Q Consensus 161 l~~g 164 (573)
||-+
T Consensus 532 LDa~ 535 (566)
T TIGR02868 532 LDAE 535 (566)
T ss_pred CCHH
T ss_conf 7876
No 469
>KOG3859 consensus
Probab=72.43 E-value=6.8 Score=18.47 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 77998899999997879878989999999997599699992898746899999999986104212255688279998499
Q gi|254780601|r 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 (573)
Q Consensus 4 f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT 83 (573)
|+.||..|.+---..||. -++++...||.||+. +++.|-...-...+. ---.|+
T Consensus 25 FdsLPdQLV~ksv~~GF~----------------FNilCvGETg~GKsT-----LmdtLFNt~f~~~p~-----~H~~~~ 78 (406)
T KOG3859 25 FDSLPDQLVNKSVSQGFC----------------FNILCVGETGLGKST-----LMDTLFNTKFESEPS-----THTLPN 78 (406)
T ss_pred CCCCHHHHHHHHHHCCCE----------------EEEEEECCCCCCHHH-----HHHHHHCCCCCCCCC-----CCCCCC
T ss_conf 443738999899862743----------------778884267754778-----999986366678878-----667887
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q gi|254780601|r 84 RELAVQVGREL 94 (573)
Q Consensus 84 rELa~Qv~~~~ 94 (573)
-+|-.|.|+.-
T Consensus 79 V~L~~~Tyelq 89 (406)
T KOG3859 79 VKLQANTYELQ 89 (406)
T ss_pred CEEECCHHHHH
T ss_conf 32100214344
No 470
>PRK09862 putative ATP-dependent protease; Provisional
Probab=72.14 E-value=6.9 Score=18.43 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.3
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 8999999978798789
Q gi|254780601|r 9 QVIGEALSERGYVNLT 24 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt 24 (573)
+.+..||+..||.-|.
T Consensus 47 eRVrsAl~nsg~~~P~ 62 (506)
T PRK09862 47 DRVRSAIINSGYEYPA 62 (506)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9999999838999998
No 471
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=72.06 E-value=5.4 Score=19.15 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=16.5
Q ss_pred CEEEEECCCHHHHHHH----HHHHHHCCCCCCC
Q ss_conf 4167751302334565----5555422666301
Q gi|254780601|r 245 KNAIVFCSTRASVSRF----TKVLAEHLFQVVA 273 (573)
Q Consensus 245 ~~~ivF~~t~~~~~~l----~~~L~~~g~~~~~ 273 (573)
...+|||.++...++- ...|...|+.+..
T Consensus 329 ~si~v~a~~~~~ld~~~~~~~~~l~~~G~~~v~ 361 (796)
T COG3451 329 LSILVFAKDKEALDEKLAMVLNILTNKGFVAVR 361 (796)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 589998199999999999999986108846753
No 472
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=71.99 E-value=6.5 Score=18.61 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=18.0
Q ss_pred HHHHHHH-CCCCEEEECCCCCCHHH
Q ss_conf 9999997-59969999289874689
Q gi|254780601|r 29 AILNPDL-REKDVLVSAQTGSGKTV 52 (573)
Q Consensus 29 ~~ip~~l-~g~d~i~~a~TGsGKT~ 52 (573)
.++.... .|++++...+.|+|||+
T Consensus 13 rAl~iAaaG~H~lLl~GpPG~GKTm 37 (207)
T pfam01078 13 RALEIAAAGGHNLLMIGPPGSGKTM 37 (207)
T ss_pred HHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 9999985478758978899802999
No 473
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=71.97 E-value=4.9 Score=19.41 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 999999999759969999289874689
Q gi|254780601|r 26 VQEAILNPDLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 26 iQ~~~ip~~l~g~d~i~~a~TGsGKT~ 52 (573)
+=..++-.++.|..+++..++|+|||+
T Consensus 32 ~~~~~l~a~~~~~~vll~G~PG~gKT~ 58 (329)
T COG0714 32 VIELALLALLAGGHVLLEGPPGVGKTL 58 (329)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 999999999859977877989877799
No 474
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=71.92 E-value=7 Score=18.40 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 024554200102--35641677513023345655555422---6663010489999999999866544881499853865
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEH---LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~~---g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDva 304 (573)
....++++|++. ....+++|.|.....++.|-+.|=.. .|-...+.++- . .....|+++|+-.
T Consensus 16 ~~~~~~c~L~~k~~~~g~~i~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~-----------~-~~~~PI~i~~~~~ 83 (143)
T PRK05728 16 ALEQLLCRLAEKALRAGWRVLVQCEDEEQAEALDEALWTFDDESFVPHGLAGEG-----------P-AAGQPVLLAWPGN 83 (143)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----------C-CCCCCEEEECCCC
T ss_conf 899999999999998699189993999999999999848997321344446888-----------7-6789989965888
Q ss_pred CCCCCCCCCCEEEEEC--CCCCHHHH
Q ss_conf 0014578873389705--88747899
Q gi|254780601|r 305 ARGIDLPDLELVIHAE--LSSNPENL 328 (573)
Q Consensus 305 aRGiDi~~v~~Vin~d--~P~~~~~y 328 (573)
.+.++-+.+||.+ .|.....|
T Consensus 84 ---~~~~~~~vLinl~~~~p~~~~~f 106 (143)
T PRK05728 84 ---RNGAHRDLLINLAAAVPAFAAAF 106 (143)
T ss_pred ---CCCCCCEEEEECCCCCCCHHHHC
T ss_conf ---88777469998998886410101
No 475
>KOG0240 consensus
Probab=71.91 E-value=4.4 Score=19.74 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=22.0
Q ss_pred CCCHHHHHHH----HHH----HCCCC--EEEECCCCCCHHHHH
Q ss_conf 7898999999----999----75996--999928987468999
Q gi|254780601|r 22 NLTSVQEAIL----NPD----LREKD--VLVSAQTGSGKTVAF 54 (573)
Q Consensus 22 ~pt~iQ~~~i----p~~----l~g~d--~i~~a~TGsGKT~af 54 (573)
.|+.-|.++. .++ |.|.+ |+.-.|||||||...
T Consensus 58 ~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm 100 (607)
T KOG0240 58 SPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTM 100 (607)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEE
T ss_conf 9971199999998899999986566515899657888851230
No 476
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=71.78 E-value=3.7 Score=20.23 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=27.1
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHH
Q ss_conf 4643189996131100100123578887521433-4225631111222001111
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAK 198 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~-~q~~l~SAT~~~~i~~l~~ 198 (573)
..+-+.+++||-=--||...+.++...++.+.++ -.|++|..--..+...++.
T Consensus 149 ~~~P~illlDEP~s~LD~~~r~~~~~~l~~l~~~~g~T~i~vTHD~~eA~~laD 202 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred HCCCCEEEECCCCCCCCHHHEEHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCC
T ss_conf 259985884366678886665247899999999869859999089999998599
No 477
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=71.57 E-value=7.1 Score=18.35 Aligned_cols=199 Identities=15% Similarity=0.202 Sum_probs=89.7
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCHH-HHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 4643189996131100100123578887521--4334225631111222001-111210123333233323256652000
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYR 222 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i~~-l~~~~~~~p~~i~~~~~~~~~~~i~~~ 222 (573)
-++-|..++||+.+|-.-.| +.+|+.+ |...-..+|-.|=|..|-. +..+.+ ..... ..+...|..+
T Consensus 117 ~~r~kvyiidEvhmls~~af----nalLKtlEePp~hv~filaTT~~~k~p~TilSRC~----~f~~~--~~~~~~i~~~ 186 (643)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSF----NALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCL----QFHLK--ALDVEQIRHQ 186 (643)
T ss_pred CCCEEEEEEECHHHCCHHHH----HHHHHHHCCCCHHCEEEEECCCHHHCCHHHHHHHH----HEECC--CCCHHHHHHH
T ss_conf 78536999722101589999----99998623786100899860774548478997776----50016--6999999999
Q ss_pred CCCCCCCHH----HHHHHHCCCCCC---------CCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 000000002----455420010235---------6416775130233456555554226663010489999999999866
Q gi|254780601|r 223 AVLVALSDR----DNAIVNILRYHG---------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289 (573)
Q Consensus 223 ~~~v~~~~k----~~~l~~ll~~~~---------~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~ 289 (573)
.-.+-..++ ..+|.-|-..-+ -+++|.|++.+-..+.+.+-|.. +.+..=...++.
T Consensus 187 l~~i~~~e~i~~~~~al~~ia~~a~gs~rdalsl~dq~i~~~~~~~~~~~v~~mlg~-----------~d~~~~~~ll~a 255 (643)
T PRK07994 187 LEHILNEEHIAHEPRALQLLARAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT-----------LDDDQALSLVEA 255 (643)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-----------CCHHHHHHHHHH
T ss_conf 999999759987889999999974786566888999999865897479999998589-----------987899999999
Q ss_pred HHCCCEEEEE--ECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC----CC-CCE---EE----EEECHHHHHH
Q ss_conf 5448814998--538650014578873389705887478999860301037----88-860---25----6405999999
Q gi|254780601|r 290 MRDGRARVCI--ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA----GR-KGM---SV----FVIPQNMQRR 355 (573)
Q Consensus 290 fr~g~~~vLV--~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa----g~-~G~---ai----~l~~~~e~~~ 355 (573)
.-+|...-|+ ...++.+|.|+..+ =.+..+.+||+-=.--. +. .+. -+ -.+++++...
T Consensus 256 l~~~d~~~~~~~~~~~~~~~~~~~~~--------l~~l~~~lh~ia~~Q~~p~~~~~~~~~~~~~~~~La~~~~~e~vQL 327 (643)
T PRK07994 256 LVEANGERVMALINEAAARGIEWEAL--------LVEMLSLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQL 327 (643)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCHHHH--------HHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99569999999999999868899999--------9999999999999984712102543016799999998479999999
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 999999850664105689
Q gi|254780601|r 356 AERLFREANVSVVWEPAP 373 (573)
Q Consensus 356 ~~~i~~~~~~~~~~~~~P 373 (573)
+.+|.=..+.++...|-|
T Consensus 328 ~YQIal~GrkdL~lAPd~ 345 (643)
T PRK07994 328 YYQTLLIGRKELPYAPDR 345 (643)
T ss_pred HHHHHHHHHHHCCCCCCH
T ss_conf 999998302004669871
No 478
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=71.55 E-value=5.5 Score=19.10 Aligned_cols=44 Identities=27% Similarity=0.260 Sum_probs=24.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 6999928987468999999999861042122556882799984998999
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
=|++..+.|+|||. ++.++...-........-..++..+-|++.
T Consensus 2 ~i~i~G~aG~GKTt-----ll~kl~~~wa~g~~~~~~~~vf~~~~r~~~ 45 (165)
T pfam05729 2 TVILQGEAGSGKTT-----LLQKLALLWAQGKLPQDFDFVFFLPCRELS 45 (165)
T ss_pred EEEEECCCCCCHHH-----HHHHHHHHHHCCCCCCCCCEEEEEEHHHHC
T ss_conf 89998279898999-----999999999869843697289999956707
No 479
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI; InterPro: IPR014129 This entry represents TraI, which is a component of the relaxosome complex. In the process of conjugative plasmid transfer the relaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein ..
Probab=71.52 E-value=3.3 Score=20.62 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHCCCC--EEEECCCCCCHHHHH---HHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 98789899999999975996--999928987468999---999999861042122556882799984998999
Q gi|254780601|r 20 YVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAF---GLALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 20 ~~~pt~iQ~~~ip~~l~g~d--~i~~a~TGsGKT~af---~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
-...|.+|+.||..++.-+| +++|.--|.|||.-+ .|-.+..+.... ....+++|=|+||++-+
T Consensus 1129 ~~~lT~Gqk~a~~li~~T~DrFv~~QGlAGvGK~T~~~sr~l~~~~~~~~~~----~~~~~~~iGLAPTH~AV 1197 (2193)
T TIGR02760 1129 LETLTHGQKQAIHLIVSTKDRFVAVQGLAGVGKTTMLESRDLEVVKAVKQAA----ESEQLQVIGLAPTHEAV 1197 (2193)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHC----CCCCCEEEECCCCCHHH
T ss_conf 3553356678864100023626898211377826765531504678888730----46886575137751677
No 480
>PRK05595 replicative DNA helicase; Provisional
Probab=71.41 E-value=7.2 Score=18.32 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=13.6
Q ss_pred ECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHH
Q ss_conf 51302334565555542--26663010-48999999999
Q gi|254780601|r 250 FCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSN 285 (573)
Q Consensus 250 F~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~ 285 (573)
|++--...+++...+.. .|++...+ .|.+++.+-..
T Consensus 235 ~fSlEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~~~~~ 273 (444)
T PRK05595 235 IFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWEN 273 (444)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 995889999999999996469884423268979999999
No 481
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=71.22 E-value=1 Score=24.00 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=37.0
Q ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC------------CHHHHHHHHHHHHHHHHHCCCEEEEEE-
Q ss_conf 9289874689999999998610421225568827999849------------989999999999998544698799998-
Q gi|254780601|r 43 SAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP------------TRELAVQVGRELEWLYAKTGVVVAVCI- 109 (573)
Q Consensus 43 ~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P------------TrELa~Qv~~~~~~l~~~~~~~v~~~~- 109 (573)
..+-|||||. |+=.+-+.+.... +.+.++=|=| .||+.. +.++++.+ .+|-+-+.+|
T Consensus 2 iGpaGSGKTT-~~~~l~~~l~~~~------r~~~vvNLDPA~e~~pY~~~iDIrd~i~-~~dvM~~~--~LGPNGali~~ 71 (234)
T pfam03029 2 VGGAGSGKTT-FVGALSEILPLRG------RSVYVVNLDPAAENLPYEADIDIRELIT-VADVMEDY--GLGPNGALTVA 71 (234)
T ss_pred CCCCCCCHHH-HHHHHHHHHHHCC------CCEEEEECCCCCCCCCCCCCCCHHHHCC-HHHHHHHC--CCCCCHHHHHH
T ss_conf 8989898899-9999999999779------9759997898665899987771787467-99999982--98973899999
Q ss_pred ---CCCCHHHHHHHHCC-CCEEEEECCCCH
Q ss_conf ---89987999996128-975998223101
Q gi|254780601|r 110 ---GGVSVHRERRDLQN-GAHIVVGTPGRL 135 (573)
Q Consensus 110 ---gg~~~~~q~~~l~~-~~~iiv~TPgrl 135 (573)
.-..+++-...|+. .--+++.|||-+
T Consensus 72 me~l~~~~d~l~~~l~~~~~y~l~DtPGQi 101 (234)
T pfam03029 72 MDFGRITLDWLLEELEYEDDYYLFDTPGQI 101 (234)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCE
T ss_conf 999999999999985255776998369835
No 482
>KOG4280 consensus
Probab=71.11 E-value=3.7 Score=20.23 Aligned_cols=131 Identities=21% Similarity=0.193 Sum_probs=55.9
Q ss_pred HHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 999975996--99992898746899999999986104212255688279998499899999999999985446--98799
Q gi|254780601|r 31 LNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVA 106 (573)
Q Consensus 31 ip~~l~g~d--~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~--~~~v~ 106 (573)
|...++|.| |.+-.|||||||....=| . |.-.=|+|-- -.|++..+..-.... -+++.
T Consensus 78 V~svl~GyNgtvFaYGQtGsGKTyTM~G~-----~-----------~~~~Giipra--f~~lF~~I~~~~~~~~f~vrvS 139 (574)
T KOG4280 78 VESVLEGYNGTVFAYGQTGSGKTYTMIGP-----D-----------PELRGLIPRA--FEHLFRHIDERKEKTRFLVRVS 139 (574)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCEEEECC-----C-----------HHHCCCCHHH--HHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99985446843886225789873477478-----8-----------4427850689--9999999974145634789853
Q ss_pred EEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHH--CCCCCCCCCEEEEEECCCCCC---CCHHHHHHHHHHH--HCCC-
Q ss_conf 9988998799999612897599822310133210--001224643189996131100---1001235788875--2143-
Q gi|254780601|r 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR--GKGLNISHLKAVVLDEADEML---DLGFRDDIEFILD--SSPK- 178 (573)
Q Consensus 107 ~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~--~~~l~l~~v~~lVlDEaD~ml---~~gf~~~i~~i~~--~~p~- 178 (573)
.+ .=+..+++.|=... +.+.+.+-. ...+.+.++..++++.++.++ +.|+. .+... .++.
T Consensus 140 ~l---EiYnE~i~DLL~~~------~~~~l~l~e~p~~Gv~V~nls~~~v~s~~d~~~~l~~G~~---nR~vgat~mN~~ 207 (574)
T KOG4280 140 YL---EIYNESIRDLLSPV------NPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLA---NRRVGATSMNEE 207 (574)
T ss_pred HH---HHHHHHHHHHHCCC------CCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHH---HCCCCCCCCCCC
T ss_conf 57---77768999985756------7677246676988558658522525999999999998765---144222346755
Q ss_pred -CCCEEEEECCCCC
Q ss_conf -3422563111122
Q gi|254780601|r 179 -KRRMLMFSATISP 191 (573)
Q Consensus 179 -~~q~~l~SAT~~~ 191 (573)
.|-.++|+-++-.
T Consensus 208 SSRSH~ifti~ies 221 (574)
T KOG4280 208 SSRSHAIFTIHIES 221 (574)
T ss_pred CCCCEEEEEEEEEE
T ss_conf 55552899999997
No 483
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=70.60 E-value=7.4 Score=18.21 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEE
Q ss_conf 4643189996131100100123578887521433-4225631
Q gi|254780601|r 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFS 186 (573)
Q Consensus 146 l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~-~q~~l~S 186 (573)
..+-+.++|||.---||.....++..+++.+.++ --|++++
T Consensus 159 ~~~P~illLDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~v 200 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV 200 (265)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 569998998188766899999999999999998509899999
No 484
>PRK08006 replicative DNA helicase; Provisional
Probab=70.41 E-value=7.5 Score=18.18 Aligned_cols=58 Identities=9% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCC---CCCCEEEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHH
Q ss_conf 024554200102---3564167751302334565555542--26663010-48999999999986
Q gi|254780601|r 230 DRDNAIVNILRY---HGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNALQ 288 (573)
Q Consensus 230 ~k~~~l~~ll~~---~~~~~~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~~~ 288 (573)
-|..+..++... .....+++|. --...++++..|.. .+++...+ .|.++..+-.++..
T Consensus 236 GKTalalnia~~~a~~~~~~V~~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~g~l~~~e~~~l~~ 299 (471)
T PRK08006 236 GKTTFAMNLCENAAMLQDKPVLIFS-LEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISG 299 (471)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7699999999999986699579981-679999999999997447775545368879999999999
No 485
>PRK05636 replicative DNA helicase; Provisional
Probab=70.16 E-value=7.6 Score=18.14 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=14.9
Q ss_pred EEEECCCHHHHHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHH
Q ss_conf 67751302334565555542--26663010-489999999999
Q gi|254780601|r 247 AIVFCSTRASVSRFTKVLAE--HLFQVVAL-SGELSQQERSNA 286 (573)
Q Consensus 247 ~ivF~~t~~~~~~l~~~L~~--~g~~~~~l-hg~~~q~~R~~~ 286 (573)
+++| .--...+++...|.. .+++...+ +|.|++.+-.++
T Consensus 299 v~~f-SLEMs~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l 340 (507)
T PRK05636 299 SVIF-SLEMSKSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKL 340 (507)
T ss_pred EEEE-ECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHH
T ss_conf 7997-15699899999999984798878885588788999999
No 486
>TIGR00596 rad1 DNA repair protein (rad1); InterPro: IPR006167 All proteins in this family, for which functions are known, are components in a multiprotein endonuclease complex, usually made up of Rad1 and Rad10 homologues. This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologues of these genes, but the function of the Archaeal proteins is not known, so are not included in this family.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006281 DNA repair.
Probab=69.83 E-value=1.6 Score=22.70 Aligned_cols=49 Identities=10% Similarity=0.272 Sum_probs=35.0
Q ss_pred HCCCCCCCHHHHHHHHCC-CC-------------CCCCEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 000000000245542001-02-------------35641677513023345655555422666
Q gi|254780601|r 222 RAVLVALSDRDNAIVNIL-RY-------------HGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270 (573)
Q Consensus 222 ~~~~v~~~~k~~~l~~ll-~~-------------~~~~~~ivF~~t~~~~~~l~~~L~~~g~~ 270 (573)
.-+...+.-|+.+|.++| +. ..+.++||.|.-..+|.+|.++|....+.
T Consensus 286 ~~~~LEe~PKW~~L~dvLt~EI~~e~~l~~~~~~~~~~~~Li~C~D~~TC~qLrdYL~~~~~~ 348 (939)
T TIGR00596 286 KEPVLEENPKWEVLTDVLTKEIEHELYLRESERLEGNGKVLIMCSDERTCLQLRDYLTTVNKK 348 (939)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 445489997289999987630443244465653278680899845755689999999863046
No 487
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=69.67 E-value=7.8 Score=18.08 Aligned_cols=59 Identities=24% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC-C---CCCCCCCEEEEECCCHHHHHH
Q ss_conf 99999999759969999289874689999999998610421-2---255688279998499899999
Q gi|254780601|r 27 QEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-R---FSPASAPLALAIAPTRELAVQ 89 (573)
Q Consensus 27 Q~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~-~---~~~~~~~~~lil~PTrELa~Q 89 (573)
+..++|. .|.. ++.|.-|||||.+-. -++.+++.... . ..+..-.+.||++=|+--|.-
T Consensus 9 ~~~~~pL--~G~~-LVeASAGTGKT~~La-~l~lRLll~~~~~~~~~~pl~id~ILvVTFT~aAA~E 71 (1181)
T PRK10876 9 DPLRLPL--QGER-LIEASAGTGKTFTIA-ALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEE 71 (1181)
T ss_pred CCCCCCC--CCCE-EEEECCCCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHH
T ss_conf 9988898--9997-988715366789999-9999998624455456799982819896567899999
No 488
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit; InterPro: IPR011953 This family of proteins catalyzes the insertion of cobalt into the corrin ring of hydrogenobyrinic acid a,c-diamide. This aerobic branch of corrin ring synthesis is part of the adenosylcobalamin biosynthetic pathway ..
Probab=69.55 E-value=7.8 Score=18.06 Aligned_cols=238 Identities=18% Similarity=0.206 Sum_probs=104.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH--HHHHHHHHHHHHHHCCCEEEEEECCCCH-
Q ss_conf 9699992898746899999999986104212255688279998499899--9999999999854469879999889987-
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL--AVQVGRELEWLYAKTGVVVAVCIGGVSV- 114 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrEL--a~Qv~~~~~~l~~~~~~~v~~~~gg~~~- 114 (573)
-|||..+-++|= |.+|..+............-+++=| ..| .+||=.-+.+-..+-.+=|+-+.||.++
T Consensus 26 Ad~~~L~sad~D------l~~La~a~~~~~~~~~~~~lR~a~l---~~L~h~A~vD~Y~~~t~~~A~~IvvRlLGg~g~W 96 (1310)
T TIGR02257 26 ADIVFLSSADSD------LALLAAALKALPFLDDLPSLRLANL---DNLQHPASVDLYVESTARKAKIIVVRLLGGRGYW 96 (1310)
T ss_pred CCEEEECCCHHH------HHHHHHHHHHHHHCCCCCCHHHHHH---HHCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCH
T ss_conf 678653300443------8999999863020035773225515---4015032343799988621756899613898702
Q ss_pred ---HHHHHHH---CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC---CHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf ---9999961---28975998223101332100012246431899961311001---00123578887521433422563
Q gi|254780601|r 115 ---HRERRDL---QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD---LGFRDDIEFILDSSPKKRRMLMF 185 (573)
Q Consensus 115 ---~~q~~~l---~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~---~gf~~~i~~i~~~~p~~~q~~l~ 185 (573)
-+|.... .++.+++|= ||- -.+.-+.|..+.++.+|++|+|.. -|=.+-+...+..+. .++.
T Consensus 97 sYGlEqL~~~~~e~~~~~L~~L-pG~----sd~~D~~L~~~s~~~~~~~~rL~~ylr~GG~~N~~~fL~~~~----~l~~ 167 (1310)
T TIGR02257 97 SYGLEQLQAWAEEERGRQLIVL-PGD----SDEPDLELNELSTVPLDQADRLWKYLREGGEENMGRFLDCLA----ALLT 167 (1310)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE-CCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC
T ss_conf 4789999999998639748750-788----867676745345788899999999986204899999999999----9846
Q ss_pred -ECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC------HHHHH
Q ss_conf -11112220011112101233332333232566520000000000024554200102356416775130------23345
Q gi|254780601|r 186 -SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST------RASVS 258 (573)
Q Consensus 186 -SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t------~~~~~ 258 (573)
-++-+.+-+.+-+--+-+|..-.+..+++. ..+.-....|.- ...|.-+|||=++ -.-++
T Consensus 168 G~~~~~~~~~~i~~a~~~~P~~~~~~~~~W~------slvqGr~~~~~G-------~~~P~V~i~fYr~~l~Ag~t~~~~ 234 (1310)
T TIGR02257 168 GRDEAPVPPKAIPKAGLYDPGRGEWTDEKWR------SLVQGRAGAKVG-------KVAPVVAILFYRSLLLAGDTALIE 234 (1310)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------HHHCCCCCCCCC-------CCCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 8887798700045477778852014786431------111153202046-------637630025678887740358999
Q ss_pred HHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 655555422666301--048999999999986654488149985386500
Q gi|254780601|r 259 RFTKVLAEHLFQVVA--LSGELSQQERSNALQMMRDGRARVCIATDVAAR 306 (573)
Q Consensus 259 ~l~~~L~~~g~~~~~--lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaR 306 (573)
.|.+.|..+|.+..+ +++=-+..--..+++-|+...++++|+|.-.|-
T Consensus 235 ~L~~~L~~~GL~P~p~fVSSLKd~~~q~~~~~~~~~~~~~~v~~tT~FA~ 284 (1310)
T TIGR02257 235 ALIDALRQRGLRPRPVFVSSLKDPAVQAGVLDLLKEEDVALVITTTGFAS 284 (1310)
T ss_pred HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99999986379862120100058789999999996289608983203455
No 489
>PRK08760 replicative DNA helicase; Provisional
Probab=69.51 E-value=7.8 Score=18.05 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 024554200102--35641677513023345655555422--6663010-4899999999998665
Q gi|254780601|r 230 DRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVAL-SGELSQQERSNALQMM 290 (573)
Q Consensus 230 ~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~l-hg~~~q~~R~~~~~~f 290 (573)
-|..+..++... ....+.+.|+.--...++++..|... +++...+ .|.++..+-.++.+..
T Consensus 241 GKTalalnia~~~A~~~~~~V~~fSLEMs~~ql~~Rlls~~s~v~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 241 GKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 478999999999998379978997036999999999999833897677764899999999999999
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=69.40 E-value=7.9 Score=18.04 Aligned_cols=122 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCEEEEEECCCC
Q ss_conf 599699992898746899999999986104212255688279998499899999999999985446--987999988998
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~--~~~v~~~~gg~~ 113 (573)
.|.=+.+..+.|||||.-..--+...-...............++.. .|+......-..+. +-++..+-||
T Consensus 20 ~Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~l~~~~l~~~~~~LSGG-- 91 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI------DQLQFLIDVGLGYLTLGQKLSTLSGG-- 91 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEH------HHHHHHHHCCCCCCCCCCCCCCCCHH--
T ss_conf 9989999999999899999988876103112032101375536885------77999997488667789916868999--
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCE--EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7999996128975998223101332100012246431--899961311001001235788875214334225631
Q gi|254780601|r 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK--AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 (573)
Q Consensus 114 ~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~--~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~S 186 (573)
.+|+-+|.+ .-..+-+ .+++||---.||..-...+..+++.+.+.-.|+++.
T Consensus 92 -qkQRvaiAr--------------------aL~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~v 145 (176)
T cd03238 92 -ELQRVKLAS--------------------ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145 (176)
T ss_pred -HHHHHHHHH--------------------HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf -999999999--------------------998689986899717744589879999999999999879989999
No 491
>COG3505 VirD4 Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]
Probab=69.13 E-value=2 Score=22.01 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=0.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
.+++.|+|||||+..|.+|-+.+...+ ++|+-|-.|.+.-+++.-++++
T Consensus 155 hil~~apSrsgKGvg~VIPn~l~~~~s-----------~v~~DpK~E~~~~~~~~r~~~G 203 (596)
T COG3505 155 HILVFAPSRSGKGVGFVIPNLLKYPGS-----------VVVLDPKGENAELTAGYRRKFG 203 (596)
T ss_pred HHHCCCCCCCCCCCCEECCCHHCCCCC-----------EEEECCCHHHHHHHHHHHHHCC
T ss_conf 530113466777651367542116885-----------4887653126999999999839
No 492
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=69.01 E-value=8 Score=17.98 Aligned_cols=139 Identities=17% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH--------------HHHHHHHHHC
Q ss_conf 59969999289874689999999998610421225568827999849989999999--------------9999985446
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG--------------RELEWLYAKT 101 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~--------------~~~~~l~~~~ 101 (573)
.|.=+.+..|-|||||. +|-.+.+++.-....-.-.+ +.+-=.|++|+|.+++ .++-.++.+.
T Consensus 27 ~G~i~~iiGpNG~GKST--LLk~l~~~l~p~~G~V~l~g-~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 27 KGEITGILGPNGSGKST--LLKCLAGLLKPKSGEVLLDG-KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHCCCCCCCCEEEECC-CCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCC
T ss_conf 99799998998889999--99998656788887799999-7245469888756189935678899995873617426774
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCC---------------CCEEEEEECCCCCCCCHHH
Q ss_conf 9879999889987999996128975998223101332100012246---------------4318999613110010012
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS---------------HLKAVVLDEADEMLDLGFR 166 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~---------------~v~~lVlDEaD~ml~~gf~ 166 (573)
........+-.+...-..+|+.- .+.++..|..-.|| +-+.+.|||--.-||+..+
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~---------~~~~la~r~~~~LSGGerQrv~iAraLaQ~~~iLLLDEPTs~LDi~~Q 174 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELL---------GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH---------CCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 65533578876899999999982---------947776685511686688999999998458997882797200387779
Q ss_pred HHHHHHHHHCC-CCCCEEEEE
Q ss_conf 35788875214-334225631
Q gi|254780601|r 167 DDIEFILDSSP-KKRRMLMFS 186 (573)
Q Consensus 167 ~~i~~i~~~~p-~~~q~~l~S 186 (573)
-++-.+++.+. +.-.++++.
T Consensus 175 ~evl~ll~~l~~~~g~tvv~v 195 (258)
T COG1120 175 IEVLELLRDLNREKGLTVVMV 195 (258)
T ss_pred HHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999999998559789999
No 493
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=68.97 E-value=6 Score=18.84 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 9999999759969999289874689
Q gi|254780601|r 28 EAILNPDLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 28 ~~~ip~~l~g~d~i~~a~TGsGKT~ 52 (573)
....-...-|++++...+.|||||+
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTm 213 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTM 213 (490)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 9999998438867875699886567
No 494
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=68.94 E-value=3.6 Score=20.33 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEECCCCCCCCHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 22464318999613110010012--35788875214334225631111222001111
Q gi|254780601|r 144 LNISHLKAVVLDEADEMLDLGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAK 198 (573)
Q Consensus 144 l~l~~v~~lVlDEaD~ml~~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~ 198 (573)
|.-++..+++|||.--||..||. |+|-..|..-|+....+|.-=-.|+++.++|.
T Consensus 110 ~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~~kp~~~~vvlTGR~aP~~L~~~AD 166 (191)
T TIGR00708 110 LADSEYDLVLLDELTVALKFGYLDVEEVVEVLQEKPKSQHVVLTGRGAPQELVELAD 166 (191)
T ss_pred HCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHCC
T ss_conf 649887764034234555348978899999985584567788866878688997515
No 495
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=68.90 E-value=8.1 Score=17.97 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 96999928987468999999999861042122556882799984998999999999999854469879999889987999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
+.+++.-+-|.|||.--..-.+-.+....+ .++++++.++|++.|..+++.+........... ...+.
T Consensus 23 r~~~i~v~RkNGKS~l~a~i~ly~~~~~ge-----~~~ei~~~A~~~~QA~~~f~~~~~mi~~~p~l~-------~~~~~ 90 (473)
T pfam03354 23 REAYVSVGRKNGKSYLMAIRVLYELLLGGK-----SNQEILVAATTFKQAEKLFKYVKNQVKLSPFLS-------IANEN 90 (473)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCC-----CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHH-------HHHHC
T ss_conf 999999826860269999999999970998-----387499997989999999999999997398777-------55301
Q ss_pred HHHHCCCCEEEEECCCCHHHHH--HCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 9961289759982231013321--0001224643189996131100100123578887521433422563111
Q gi|254780601|r 118 RRDLQNGAHIVVGTPGRLCDHI--RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 118 ~~~l~~~~~iiv~TPgrl~d~~--~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT 188 (573)
...-...-.|.+-..+-++.-+ +.++++-.+..++|+||.-.+-+ .+-++.|-..+....|-+++.-|
T Consensus 91 ~~~~~~~~~i~~~~t~s~~~~ls~~~~~~dG~~~~~~i~DE~h~~~~---~~~~~~l~sg~~~r~~~l~~~IT 160 (473)
T pfam03354 91 KLLKSQKDGIEMKINNNVFKALSNNGDQYDGGNPSLAIFDEMHEFKD---RELVSTIVTGMRKQDNPQTIQIT 160 (473)
T ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCC---HHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 10131001589807896899985789876699872899872230488---27899998763168887199976
No 496
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=68.73 E-value=3.6 Score=20.29 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH-------HHHHHHHHHHCCCEEEEE
Q ss_conf 5996999928987468999999999861042122556882799984998999999-------999999854469879999
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv-------~~~~~~l~~~~~~~v~~~ 108 (573)
.|.-+.+..++|||||. ++-++..+..-....-.-.+ +-+-=.+.++|..+| ...+....-...+....-
T Consensus 32 ~GE~vaivG~nGsGKST--L~k~l~Gl~~p~~G~I~i~G-~~i~~~~~~~lr~~ig~VfQ~P~~~l~~~tV~e~iafgl~ 108 (279)
T PRK13635 32 EGEWVAIVGHNGSGKST--LAKLLNGLLLPEAGTITVGG-MVLSEETVWDVRKQIGMVFQNPDNQFVGTTVQDDVAFGLE 108 (279)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCCCCCCCCEEEECC-EECCCCCHHHHHHHEEEEECCHHHHCCCCHHHHHHHHHHH
T ss_conf 99899999999965999--99999728888896499999-9998578799974366882185652576268999988998
Q ss_pred ECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCC---------------CCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 889987999996128975998223101332100012246---------------43189996131100100123578887
Q gi|254780601|r 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS---------------HLKAVVLDEADEMLDLGFRDDIEFIL 173 (573)
Q Consensus 109 ~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~---------------~v~~lVlDEaD~ml~~gf~~~i~~i~ 173 (573)
.-|.+-....+.+..-.+.+ .+.+++.+....|| +-+.+++||.=-.||.--..++..++
T Consensus 109 ~~g~~~~e~~~rv~~~l~~~-----gl~~~~~~~p~~LSGGQrQRvaIAraL~~~P~iLilDEPTs~LD~~~~~~i~~~l 183 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQV-----GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDILILDEATSMLDPQGRREVLETV 183 (279)
T ss_pred HCCCCHHHHHHHHHHHHHHC-----CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 77999999999999999877-----9978861793439999999999999997099989973874548989999999999
Q ss_pred HHCCCCCCEEEEECC
Q ss_conf 521433422563111
Q gi|254780601|r 174 DSSPKKRRMLMFSAT 188 (573)
Q Consensus 174 ~~~p~~~q~~l~SAT 188 (573)
..+..+..+-+.-.|
T Consensus 184 ~~L~~~~g~TvI~it 198 (279)
T PRK13635 184 RQLKEQKGITVLSIT 198 (279)
T ss_pred HHHHHCCCCEEEEEE
T ss_conf 999983798999997
No 497
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=68.64 E-value=8.2 Score=17.93 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH----------------------------------HCCCCCCCCCCCCEEEEEC
Q ss_conf 599699992898746899999999986----------------------------------1042122556882799984
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTL----------------------------------LAENDRFSPASAPLALAIA 81 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l----------------------------------~~~~~~~~~~~~~~~lil~ 81 (573)
.|.=+.+..++|||||. ++-+|..+ .+...-......+.-+-=.
T Consensus 29 ~Ge~~~llGpsG~GKTT--llr~iaGl~~p~~G~I~~~g~~v~~~~~~~R~i~~vfQ~~~L~p~ltV~eni~~~l~~~~~ 106 (358)
T PRK11650 29 DGEFIVLVGPSGCGKST--LLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (358)
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99899999998636999--9999976999886299999999999997787576772555448787487866557876288
Q ss_pred CCHHHHHHHHHHHHHH--HHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 9989999999999998--54469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 82 PTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l--~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
|..|....|.+.+..+ ....+-+...+-|| .+|+-+| +--++.-| +.+++||.=-
T Consensus 107 ~~~~~~~rv~~~l~~l~l~~~~~r~p~~LSGG---q~QRval---ARAL~~~P-----------------~vlllDEP~s 163 (358)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKPRELSGG---QRQRVAM---GRAIVREP-----------------AVFLFDEPLS 163 (358)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCHHHCCHH---HHHHHHH---HHHHHCCC-----------------CEEEECCCCC
T ss_conf 64678899999987522624224897478956---7899998---35750499-----------------8688738877
Q ss_pred CCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHH
Q ss_conf 00100123578887521433-42256311112220011112
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKN 199 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p~~-~q~~l~SAT~~~~i~~l~~~ 199 (573)
.||...+.++...++.+... ..|++|.---..+...++.+
T Consensus 164 ~LD~~~r~~~~~~l~~l~~~~g~T~i~vTHd~~eA~~laDr 204 (358)
T PRK11650 164 NLDAKLRVQMRLEIQRLHRRLGTTSLYVTHDQVEAMTLADR 204 (358)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCCE
T ss_conf 67998999999999999997597799998999999986999
No 498
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=68.63 E-value=6.5 Score=18.61 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 899961311001001235788875214334225631
Q gi|254780601|r 151 AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186 (573)
Q Consensus 151 ~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~S 186 (573)
+.|+||.|-=||---.+-+..+++...++.|.++.|
T Consensus 152 FyvLDEVDAALD~~Nv~r~a~~ike~s~~aQFIVIT 187 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 589735642467888999999999847797699998
No 499
>PRK06904 replicative DNA helicase; Validated
Probab=68.53 E-value=8.2 Score=17.92 Aligned_cols=105 Identities=15% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC---CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 996999928987468999999999861042122556882799984---99899999999999985446987999988998
Q gi|254780601|r 37 EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA---PTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~---PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~ 113 (573)
|.=+|+-|.+|.|||. |++-+..++....... +++.+ +..||+.-+ ++...++...-+..|..
T Consensus 221 g~LiViAaRPsmGKTa-~alnia~n~A~~~~~~-------V~~fSLEM~~~~l~~R~------ls~~s~v~~~~i~~g~~ 286 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAMASEKP-------VLVFSLEMPAEQIMMRM------LASLSRVDQTKIRTGQN 286 (472)
T ss_pred CCEEEEEECCCCCHHH-HHHHHHHHHHHHCCCC-------EEEECCCCCHHHHHHHH------HHHHCCCCHHHHHCCCC
T ss_conf 7579997379875689-9999999999955995-------79977879999999999------99864999888646885
Q ss_pred HHHH--------HHHHCCCC-EEEEECCCCHHHHHHCCCCCCC----CCEEEEEE
Q ss_conf 7999--------99612897-5998223101332100012246----43189996
Q gi|254780601|r 114 VHRE--------RRDLQNGA-HIVVGTPGRLCDHIRGKGLNIS----HLKAVVLD 155 (573)
Q Consensus 114 ~~~q--------~~~l~~~~-~iiv~TPgrl~d~~~~~~l~l~----~v~~lVlD 155 (573)
+..+ ...+...| -.+--||+--+..+....-.+. .++++|+|
T Consensus 287 l~~~e~~~~~~~~~~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~~~l~~vvID 341 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVD 341 (472)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6099999999999998468981684699999999999999999873899789963
No 500
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=68.51 E-value=8.2 Score=17.92 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH-HHHH
Q ss_conf 999289874689999999998610421225568827999849989999999999998544698799998899879-9999
Q gi|254780601|r 41 LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RERR 119 (573)
Q Consensus 41 i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~-~q~~ 119 (573)
+-..+-|+|||-+--|-.-.---.......+...|... ++.+..+..+..+.|.-+-+...-. +.++
T Consensus 47 lf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~------------c~~c~~i~~~~~~dv~EiDaas~~gv~~ir 114 (507)
T PRK06645 47 LLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEK------------CTNCISFNNHNHPDIIEIDAASKTSVDDIR 114 (507)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------------CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 74587997889999999999679998888998888888------------767899865899985996378888889999
Q ss_pred HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCC
Q ss_conf 612897599822310133210001224643189996131100100123578887521--43342256311112220
Q gi|254780601|r 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAI 193 (573)
Q Consensus 120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~--p~~~q~~l~SAT~~~~i 193 (573)
.|...+...-.. ++-+.+|+||++.|=.-.| ..+++.+ |...-..+|..|-|..|
T Consensus 115 ~l~~~~~~~p~~---------------~~~kv~iidE~hmls~~a~----nallktlEepp~~~~Fi~atte~~ki 171 (507)
T PRK06645 115 RIIESAEYKPLQ---------------GKHKIFIIDEVHMLSKGAF----NALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred HHHHHCCCCCCC---------------CCEEEEEECCHHHCCHHHH----HHHHHHHHCCCCCEEEEEECCCHHHC
T ss_conf 998635517876---------------7435899521422489999----99999742786443899974853648
Done!