HHsearch alignment for GI: 254780601 and conserved domain: pfam00176

>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=98.04  E-value=0.00038  Score=47.09  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             HHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999997----5996999928987468999999999861042122556882799984998999999999999854469
Q gi|254780601|r   27 QEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG  102 (573)
Q Consensus        27 Q~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~  102 (573)
T Consensus         2 Q~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~-ia~l~~~~~~~~-----~~~~~LIV~P~s-l~~~W~~Ei~~~~~--~   72 (295)
T pfam00176         2 QLEGVNWLISLYNNGLGGILADEMGLGKTLQT-ISLLAYLKELKP-----LAGPHLVVCPLS-TLDNWLNEFEKWAP--D   72 (295)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCC-----CCCCEEEEECHH-HHHHHHHHHHHHCC--C
T ss_conf             78899999998727999897227875799999-999999998388-----999889997578-88767889998679--9


Q ss_pred             CEEEEEECCCCHHHH-H-HHH-CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             879999889987999-9-961-2897599822310133210001224643189996131100100123578887521433
Q gi|254780601|r  103 VVVAVCIGGVSVHRE-R-RDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK  179 (573)
Q Consensus       103 ~~v~~~~gg~~~~~q-~-~~l-~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~  179 (573)
T Consensus        73 ~~~~~~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~--~l~~~~w~~vI~DEaH~iKN~--~s~~~~a~~~l~~-  147 (295)
T pfam00176        73 LNIVVYYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKD--ELHKANWRYVILDEGHRIKNA--KSKLSLALKSLKT-  147 (295)
T ss_pred             CCEEEEEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH--HHHCCCCCEEEEECCCCCCCH--HHHHHHHHHHCCC-
T ss_conf             70799984707689998867741688599930999997599--984087658998762012587--8899999995235-


Q ss_pred             CCEEEEECC
Q ss_conf             422563111
Q gi|254780601|r  180 RRMLMFSAT  188 (573)
Q Consensus       180 ~q~~l~SAT  188 (573)
T Consensus       148 ~~r~~LTGT  156 (295)
T pfam00176       148 NNRLLLTGT  156 (295)
T ss_pred             CCEEEEECC
T ss_conf             818998687