HHsearch alignment for GI: 254780601 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=98.04 E-value=0.00038 Score=47.09 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=85.0
Q ss_pred HHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999997----5996999928987468999999999861042122556882799984998999999999999854469
Q gi|254780601|r 27 QEAILNPDL----REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG 102 (573)
Q Consensus 27 Q~~~ip~~l----~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~ 102 (573)
T Consensus 2 Q~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~-ia~l~~~~~~~~-----~~~~~LIV~P~s-l~~~W~~Ei~~~~~--~ 72 (295)
T pfam00176 2 QLEGVNWLISLYNNGLGGILADEMGLGKTLQT-ISLLAYLKELKP-----LAGPHLVVCPLS-TLDNWLNEFEKWAP--D 72 (295)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCC-----CCCCEEEEECHH-HHHHHHHHHHHHCC--C
T ss_conf 78899999998727999897227875799999-999999998388-----999889997578-88767889998679--9
Q ss_pred CEEEEEECCCCHHHH-H-HHH-CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 879999889987999-9-961-2897599822310133210001224643189996131100100123578887521433
Q gi|254780601|r 103 VVVAVCIGGVSVHRE-R-RDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179 (573)
Q Consensus 103 ~~v~~~~gg~~~~~q-~-~~l-~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~ 179 (573)
T Consensus 73 ~~~~~~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~--~l~~~~w~~vI~DEaH~iKN~--~s~~~~a~~~l~~- 147 (295)
T pfam00176 73 LNIVVYYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKD--ELHKANWRYVILDEGHRIKNA--KSKLSLALKSLKT- 147 (295)
T ss_pred CCEEEEEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH--HHHCCCCCEEEEECCCCCCCH--HHHHHHHHHHCCC-
T ss_conf 70799984707689998867741688599930999997599--984087658998762012587--8899999995235-
Q ss_pred CCEEEEECC
Q ss_conf 422563111
Q gi|254780601|r 180 RRMLMFSAT 188 (573)
Q Consensus 180 ~q~~l~SAT 188 (573)
T Consensus 148 ~~r~~LTGT 156 (295)
T pfam00176 148 NNRLLLTGT 156 (295)
T ss_pred CCEEEEECC
T ss_conf 818998687