HHsearch alignment for GI: 254780601 and conserved domain: pfam00271
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=99.70 E-value=4.6e-17 Score=133.96 Aligned_cols=77 Identities=48% Similarity=0.791 Sum_probs=74.7
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC
Q ss_conf 55422666301048999999999986654488149985386500145788733897058874789998603010378
Q gi|254780601|r 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339 (573)
Q Consensus 263 ~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag 339 (573)
T Consensus 2 ~l~~~g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gid~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 78 (78)
T pfam00271 2 LLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNVVINYDLPWNPASYIQRIGRAGRAG 78 (78)
T ss_pred CHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 45568985999869799999999999998799739999256525677878999999789969899999972687799