HHsearch alignment for GI: 254780601 and conserved domain: pfam02534

>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.

Probab=96.49  E-value=0.0045  Score=39.84  Aligned_cols=56  Identities=30%  Similarity=0.184  Sum_probs=41.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             96999928987468999999999861042122556882799984998999999999999854469879999
Q gi|254780601|r   38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC  108 (573)
Q Consensus        38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~  108 (573)
T Consensus        45 ~H~lviaptgsGKt~~~ViPnLl~~~-----------~S~VV~DpKGEl~~~Ta~~r~~~----G~~V~v~  100 (468)
T pfam02534        45 SHVLVFAGTGSGKGVGVVIPNLLVWK-----------GSIVVLDPKGELWELTSGIREKQ----GRKVFVL  100 (468)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHCC-----------CCEEEEECCHHHHHHHHHHHHHC----CCEEEEE
T ss_conf             67999848999723424298885189-----------97899948488999999999977----9969999