HHsearch alignment for GI: 254780601 and conserved domain: pfam03237
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=95.85 E-value=0.15 Score=29.53 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=57.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHH-CCCEEEEEECCCCHHHHHH
Q ss_conf 99289874689999999998610421225568827999849989999999-999998544-6987999988998799999
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG-RELEWLYAK-TGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~-~~~~~l~~~-~~~~v~~~~gg~~~~~q~~ 119 (573)
T Consensus 2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~-------~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i 68 (380)
T pfam03237 2 ILGSRQSGKTFAFAREALRHALGNGPK-------NQIILSASKAQARLEFKKGIIEIAGDLLEITFEEK------NGNPI 68 (380)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCC-------CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEC------CCCEE
T ss_conf 426452528399999999999858997-------28999799999999999999996688638716727------88739
Q ss_pred HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 6128975998223101332100012246431899961311001
Q gi|254780601|r 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162 (573)
Q Consensus 120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~ 162 (573)
T Consensus 69 ~~~nGs~i~~~~~~~-~~--~~~~~rG~~~~~i~~DE~a~~~~ 108 (380)
T pfam03237 69 ILPNGAKLYFLGLES-ET--TAQGYRGASIAGIYFDEATWLPK 108 (380)
T ss_pred EECCCCEEEEEECCC-CC--CHHHCCCCCCCEEEEEEHHHCCC
T ss_conf 915998899962577-66--43103485455499830453662