HHsearch alignment for GI: 254780601 and conserved domain: pfam03237

>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=95.85  E-value=0.15  Score=29.53  Aligned_cols=105  Identities=15%  Similarity=0.129  Sum_probs=57.9

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHH-CCCEEEEEECCCCHHHHHH
Q ss_conf             99289874689999999998610421225568827999849989999999-999998544-6987999988998799999
Q gi|254780601|r   42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG-RELEWLYAK-TGVVVAVCIGGVSVHRERR  119 (573)
Q Consensus        42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~-~~~~~l~~~-~~~~v~~~~gg~~~~~q~~  119 (573)
T Consensus         2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~-------~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i   68 (380)
T pfam03237         2 ILGSRQSGKTFAFAREALRHALGNGPK-------NQIILSASKAQARLEFKKGIIEIAGDLLEITFEEK------NGNPI   68 (380)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCC-------CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEC------CCCEE
T ss_conf             426452528399999999999858997-------28999799999999999999996688638716727------88739


Q ss_pred             HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             6128975998223101332100012246431899961311001
Q gi|254780601|r  120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD  162 (573)
Q Consensus       120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~  162 (573)
T Consensus        69 ~~~nGs~i~~~~~~~-~~--~~~~~rG~~~~~i~~DE~a~~~~  108 (380)
T pfam03237        69 ILPNGAKLYFLGLES-ET--TAQGYRGASIAGIYFDEATWLPK  108 (380)
T ss_pred             EECCCCEEEEEECCC-CC--CHHHCCCCCCCEEEEEEHHHCCC
T ss_conf             915998899962577-66--43103485455499830453662