HHsearch alignment for GI: 254780601 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.06 E-value=1.7e-09 Score=82.96 Aligned_cols=99 Identities=27% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78989999999997599699992898746899999999986104212255688279998499899999999999985446
Q gi|254780601|r 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101 (573)
Q Consensus 22 ~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~ 101 (573)
T Consensus 3 ~LR~yQ~~a~~~~~~~~~~~i~~pTGsGKT~~~~-~~i~~~~~~--------~~~~lvlvp~~~L~~Q~~~~~------- 66 (103)
T pfam04851 3 ELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAA-KLIARLLKG--------KKKVLFLVPRKDLLEQALEEF------- 66 (103)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHC--------CCCEEEEECCHHHHHHHHHHH-------
T ss_conf 8729999999999963986999589998799999-999999846--------992999908299999999965-------
Q ss_pred CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 98799998899879999961289759982231013321000122464318999613110010012357888752143342
Q gi|254780601|r 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181 (573)
Q Consensus 102 ~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q 181 (573)
T Consensus 67 -------------------------------------------------lii~DE~H~~~a~~~---~~~l~~~~~~-~~ 93 (103)
T pfam04851 67 -------------------------------------------------VIIIDEAHHSSAKTK---YRKILEYFKP-AF 93 (103)
T ss_pred -------------------------------------------------HHHHHHHHHCCCHHH---HHHHHHHCCC-CE
T ss_conf -------------------------------------------------646016352353789---9999995772-60
Q ss_pred EEEEECCC
Q ss_conf 25631111
Q gi|254780601|r 182 MLMFSATI 189 (573)
Q Consensus 182 ~~l~SAT~ 189 (573)
T Consensus 94 ~lGlTATP 101 (103)
T pfam04851 94 LLGLTATP 101 (103)
T ss_pred EEEEEECC
T ss_conf 89980088