HHsearch alignment for GI: 254780601 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=97.51 E-value=0.0031 Score=40.95 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=66.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCCCHH
Q ss_conf 99699992898746899999999986104212255688279998499899999999999985446987999-98899879
Q gi|254780601|r 37 EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115 (573)
Q Consensus 37 g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~-~~gg~~~~ 115 (573)
T Consensus 2 g~~t~ld~HPGaGKTr~vLP~~v~~~i~--------~~lRtlVLaPTRVV~~Em~eAL----~g~~vr~~t~a~~~---- 65 (146)
T pfam07652 2 GTLTVLDLHPGAGKTRKVLPELVRECID--------RRLRTLVLAPTRVVLAEMEEAL----RGLPIRYHTPAVSS---- 65 (146)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHH----CCCCCEEECHHHHC----
T ss_conf 8327985389999702248999999997--------2861899772799999999997----58994675234313----
Q ss_pred HHHHHHCCCCEEEEECC-CCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH--HHH--HHHHCC--CCCCEEEEECC
Q ss_conf 99996128975998223-101332100012246431899961311001001235--788--875214--33422563111
Q gi|254780601|r 116 RERRDLQNGAHIVVGTP-GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEF--ILDSSP--KKRRMLMFSAT 188 (573)
Q Consensus 116 ~q~~~l~~~~~iiv~TP-grl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~--i~~--i~~~~p--~~~q~~l~SAT 188 (573)
T Consensus 66 -----~~~~~~ivdvmCHAT~t~r~l~-~~~~~ny~viIMDE~H------~~DP~SIAarG~~~~~~~~g~~a~i~mTAT 133 (146)
T pfam07652 66 -----EHTGREIVDVMCHATFTQRLLS-PVRVPNYEVIIMDEAH------FTDPASIAARGYISTLVELGEAAAIFMTAT 133 (146)
T ss_pred -----CCCCCCEEEEECHHHHHHHHHC-CCCCCCEEEEEEECCC------CCCHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf -----6688841889715988889736-8885644799985122------389899998899998854386579999568
Q ss_pred CCCC
Q ss_conf 1222
Q gi|254780601|r 189 ISPA 192 (573)
Q Consensus 189 ~~~~ 192 (573)
T Consensus 134 PPG~ 137 (146)
T pfam07652 134 PPGT 137 (146)
T ss_pred CCCC
T ss_conf 9998