HHsearch alignment for GI: 254780601 and conserved domain: pfam12340
>pfam12340 DUF3638 Protein of unknown function (DUF3638). This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.74 E-value=0.018 Score=35.84 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHH
Q ss_conf 89899999999975---99699992898746899999999986104212255688279998499899999999999-985
Q gi|254780601|r 23 LTSVQEAILNPDLR---EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLY 98 (573)
Q Consensus 23 pt~iQ~~~ip~~l~---g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~-~l~ 98 (573)
T Consensus 24 iR~~Q~~va~~~i~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-------Lvr~vvp~-~Ll~q~~~~L~~~lg 94 (229)
T pfam12340 24 IRPVQVDVARAMISPSSGSNSVLQLNMGEGKTSV-IVPMVAAVLADGSR-------LVRVIVPK-PLLRQMAQMLQSRLG 94 (229)
T ss_pred ECHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCEE-EHHHHHHHHCCCCC-------EEEEECCH-HHHHHHHHHHHHHHH
T ss_conf 4289999999985755788722011206996224-37889999748884-------58998268-899999999999864
Q ss_pred HHCCCEEEE--EECCCCHHH----HHHH----HCCCCEEEEECCCCHHHH-------HHCCCCC-----------CCCCE
Q ss_conf 446987999--988998799----9996----128975998223101332-------1000122-----------46431
Q gi|254780601|r 99 AKTGVVVAV--CIGGVSVHR----ERRD----LQNGAHIVVGTPGRLCDH-------IRGKGLN-----------ISHLK 150 (573)
Q Consensus 99 ~~~~~~v~~--~~gg~~~~~----q~~~----l~~~~~iiv~TPgrl~d~-------~~~~~l~-----------l~~v~ 150 (573)
T Consensus 95 gll~r~v~~lPFsR~~~~~~~~~~~~~~~~~~~~~~~GIll~~PEhilSf~L~~le~l~~~~~~~a~~m~~~~~~l~~~~ 174 (229)
T pfam12340 95 GLLGREIYHLPFSRRTPTTESEINLYRQLHEECMKEGGVLLAQPEHILSFKLSGLQRLIDGKLSEARSMIKTQQWLDEHS 174 (229)
T ss_pred HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 21377059840347688998999999999999997298799680787768988689987388789999999999998448
Q ss_pred EEEEECCCCCCCC
Q ss_conf 8999613110010
Q gi|254780601|r 151 AVVLDEADEMLDL 163 (573)
Q Consensus 151 ~lVlDEaD~ml~~ 163 (573)
T Consensus 175 rDIlDEsD~~L~~ 187 (229)
T pfam12340 175 RDILDESDENLAV 187 (229)
T ss_pred CCCEECCCCCCCC
T ss_conf 7104451034565