BLAST/PSIBLAST alignment of GI: 254780601 and GI: 116252251 at iteration 1
>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [Rhizobium leguminosarum bv. viciae 3841] Length = 651
>gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [Rhizobium leguminosarum bv. viciae 3841] Length = 651
 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/565 (56%), Positives = 412/565 (72%), Gaps = 8/565 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWL+  TG V+  C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  +++   R R  RD++  ++    G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEITVQDDRSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K S+D
Sbjct: 541 RLSG-TPDFSRAPAPKPYAGKPSRD 564