BLAST/PSIBLAST alignment of GI: 254780601 and GI: 116252251 at iteration 1
>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [Rhizobium leguminosarum bv. viciae 3841] Length = 651
>gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD) [Rhizobium leguminosarum bv. viciae 3841] Length = 651
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/565 (56%), Positives = 412/565 (72%), Gaps = 8/565 (1%)
Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
M F + I +AL +RGY LT VQ+A+L+P L D LVSAQTGSGKTVAFGLALA
Sbjct: 1 MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60
Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
TLL +RF A APLAL IAPTRELA+QV RELEWL+ TG V+ C+GG+ + ERR
Sbjct: 61 TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120
Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180
Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
R LMFSAT+ AI LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240
Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
Y+ A NAIVFCSTRA+V+ T F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300
Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S ++P N +R+AERL
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360
Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
A +S W PS E + ERD +R+L DP+F ++ Q +E+ +V LLA H EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420
Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
LR++R APE++ +++ R R RD++ ++ G R++F S WFS+SVG KQ
Sbjct: 421 LRLYRTNHSAPEDLIEITVQDDRSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480
Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
AE RWL+PMLCR+ + ++ IGAI++QP+ TFVE++A + + L++GI++
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540
Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
L G PDF R + K S+D
Sbjct: 541 RLSG-TPDFSRAPAPKPYAGKPSRD 564