BLAST/PSIBLAST alignment of GI: 254780601 and GI: 15890807 at iteration 1
>gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58] Length = 615
>gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58] Length = 615
 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/568 (58%), Positives = 414/568 (72%), Gaps = 7/568 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   I +AL +RGY +LT VQ+A+L P+L  KD LVSAQTGSGKTVAFG+ALA+
Sbjct: 1   MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALAT 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL+EN RF  ASAPLALAIAPTRELA+QV RELEWLY   GV +A C+GG+ +  ERR 
Sbjct: 61  TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHI+   L++S ++AVVLDEADEMLDLGFR+D+EFIL+ SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQK+AVR+  ASE +QH DI+YRA+LV+ SDR+NAI+N LR
Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGEL+Q ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S  V+P + +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A VS  W   PSVE I ERD  R+L DP   +++  DE+  V+ LL +H  EK+AA F
Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPTLSEAVTDDERDFVNKLLEQHGAEKVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQK 478
           +R++ +G  APE+I  V+L + R   RD     +     RD  +F  S+WFSLSVG KQ 
Sbjct: 421 VRLYHSGRSAPEDIFEVALDNTRKPRRDSFETTENNAPRRDRSDFSDSAWFSLSVGRKQS 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534
           AE RWL+PMLCR   I RQ IGAIR+Q   TFVE++AD VD     + + + L+KGI+LK
Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATK 562
            + G KP+  G      +   +Q   TK
Sbjct: 541 QMEG-KPEMTGNAREDTRPATAQRKFTK 567